version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2188 53.29 0 2533551..2535068 - 505 117624502 purF APECO1_4252 - amidophosphoribosyltransferase 2189 49.08 0 2535105..2535593 - 162 117624503 cvpA APECO1_4251 - colicin V production protein 2190 57.16 +1 2536125..2536787 - 220 117624504 dedD APECO1_4250 - hypothetical protein 2191 55.79 +1 2536777..2538045 - 422 117624505 folC APECO1_4249 - bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2192 55.41 0 2538115..2539029 - 304 162317573 accD APECO1_4248 - acetyl-CoA carboxylase subunit beta 2193 47.88 0 2539185..2539844 - 219 117624507 - APECO1_4247 - hypothetical protein 2194 55.60 0 2539927..2540739 - 270 117624508 truA APECO1_4246 - tRNA pseudouridine synthase A 2195 54.83 0 2540739..2541752 - 337 117624509 usg APECO1_4245 - putative semialdehyde dehydrogenase 2196 53.30 0 2541818..2542954 - 378 117624510 pdxB APECO1_4244 - erythronate-4-phosphate dehydrogenase 2197 52.21 0 2543053..2544048 + 331 117624511 div APECO1_4243 - flagella biosynthesis regulator 2198 56.91 +1 2544045..2545223 - 392 117624512 yfcJ APECO1_4242 - hypothetical protein 2199 56.10 +1 2545488..2546708 - 406 117624513 fabB APECO1_4241 - 3-oxoacyl-(acyl carrier protein) synthase I 2200 52.02 0 2546867..2548873 + 668 117624514 mnmC APECO1_4240 - 5-methylaminomethyl-2-thiouridine methyltransferase 2201 52.33 0 2548994..2549272 - 92 117624515 yfcL APECO1_4239 - hypothetical protein 2202 51.55 0 2549306..2549854 - 182 117624516 yfcM APECO1_4238 - hypothetical protein 2203 52.35 0 2549854..2550663 - 269 117624517 yfcA APECO1_4237 - hypothetical protein 2204 55.76 +1 2550663..2551487 - 274 117624518 mepA APECO1_4236 - penicillin-insensitive murein endopeptidase 2205 55.43 0 2551491..2552576 - 361 117624519 aroC APECO1_4235 - chorismate synthase 2206 52.21 0 2552611..2553876 - 421 117624520 prmB APECO1_4234 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2207 48.52 0 2554580..2555422 - 280 117624521 yfcO APECO1_4233 - putative fimbrial adhesin YfcO precursor 2208 53.98 0 2555424..2555951 - 175 117624522 yfcP APECO1_4232 - putative Yfc fimbriae subunit YfcP precursor 2209 53.75 0 2555948..2556427 - 159 117624523 yfcQ APECO1_4231 - putative Yfc fimbriae subunit YfcQ precursor 2210 54.40 0 2556424..2556969 - 181 117624524 yfcR APECO1_4230 - hypothetical protein 2211 55.51 0 2556944..2557696 - 250 117624525 yfcS APECO1_4229 - putative periplasmic chaperone YfcS precursor 2212 54.35 0 2557716..2560370 - 884 117624526 yfcU APECO1_4228 - putative outer membrane usher YfcU precursor 2213 49.73 0 2560238..2560987 - 249 117624527 yfcV APECO1_4227 - putative Yfc fimbriae subunit YfcV precursor 2214 52.06 0 2561553..2562038 - 161 117624528 sixA APECO1_4226 - phosphohistidine phosphatase 2215 52.21 0 2562241..2564385 - 714 117624529 fadJ APECO1_4225 - multifunctional fatty acid oxidation complex subunit alpha 2216 55.84 +1 2564385..2565695 - 436 117624530 fadI APECO1_4224 - 3-ketoacyl-CoA thiolase 2217 51.46 0 2565876..2566184 - 102 117624531 yfcZ APECO1_4223 - hypothetical protein 2218 42.06 -1 2566245..2566496 - 83 117624532 - APECO1_4222 - hypothetical protein 2219 50.63 0 2566526..2567872 + 448 117624533 fadL APECO1_4221 - long-chain fatty acid outer membrane transporter 2220 50.93 0 2567930..2568685 - 251 117624534 vacJ APECO1_4220 - putative lipoprotein VacJ 2221 48.66 0 2568979..2569911 + 310 117624535 yfdC APECO1_4219 - putative transport protein 2222 47.75 0 2570223..2571380 + 385 117624536 - APECO1_4218 - putative phage integrase 2223 37.99 -2 2571620..2572543 - 307 117624537 - APECO1_4217 - putative capsule O-acetyl transferase 2224 44.13 -1 2572697..2575642 - 981 117624538 sia APECO1_4216 - putative endo-alpha-sialidase 2225 43.63 -1 2575743..2576645 - 300 117624539 - APECO1_4215 - putative antirepressor protein 2226 45.07 -1 2577393..2577929 + 178 117624540 - APECO1_4214 - hypothetical protein 2227 37.78 -2 2577978..2578427 - 149 117624541 - APECO1_4213 - hypothetical protein 2228 43.21 -1 2578436..2579002 - 188 117624542 - APECO1_4212 - hypothetical protein 2229 39.39 -2 2579199..2579528 + 109 117624543 - APECO1_42112 - hypothetical protein 2230 47.62 0 2579546..2581561 - 671 117624544 - APECO1_4211 - hypothetical protein 2231 48.76 0 2581558..2583009 - 483 117624545 - APECO1_4210 - putative phage injection protein 2232 51.52 0 2583020..2583712 - 230 117624546 - APECO1_4209 - putative DNA transfer protein 2233 50.00 0 2583715..2584170 - 151 117624547 - APECO1_4208 - head assembly protein 2234 49.15 0 2584170..2584871 - 233 117624548 - APECO1_4207 - putative DNA stabilization protein 2235 50.81 0 2584871..2586289 - 472 117624549 - APECO1_4206 - putative DNA stabilization protein 2236 48.92 0 2586299..2586760 - 153 117624550 - APECO1_4205 - putative DNA stabilization protein 2237 50.64 0 2586971..2588224 - 417 117624551 - APECO1_4204 - hypothetical protein 2238 50.67 0 2588243..2589136 - 297 117624552 - APECO1_4203 - putative phage scaffold protein 2239 51.66 0 2589227..2591425 - 732 117624553 - APECO1_4202 - putative phage portal protein 2240 51.20 0 2591427..2592842 - 471 117624554 - APECO1_4201 - phage terminase large subunit 2241 47.39 0 2592839..2593279 - 146 117624555 - APECO1_4200 - hypothetical protein 2242 46.91 0 2593282..2593524 - 80 117624556 - APECO1_4199 - hypothetical protein 2243 44.44 -1 2593752..2594363 - 203 117624557 - APECO1_4198 - hypothetical protein 2244 50.91 0 2594640..2595077 - 145 117624558 - APECO1_4197 - hypothetical protein 2245 50.31 0 2595074..2595550 - 158 117624559 - APECO1_4196 - putative endolysin 2246 48.46 0 2595534..2595857 - 107 117624560 - APECO1_4195 - putative holin 2247 45.09 -1 2596454..2596972 - 172 117624561 - APECO1_4194 - putative antitermination protein 2248 49.04 0 2597154..2597516 - 120 117624562 - APECO1_4193 - Holliday junction resolvase 2249 51.89 0 2597513..2597803 - 96 117624563 - APECO1_4192 - hypothetical protein 2250 47.03 0 2597803..2598525 - 240 117624564 roi APECO1_4191 - DNA-binding protein Roi 2251 43.19 -1 2598687..2599112 - 141 117624565 - APECO1_4190 - hypothetical protein 2252 49.04 0 2599282..2599542 - 86 117624566 - APECO1_4189 - hypothetical protein 2253 48.89 0 2599892..2600206 - 104 117624567 - APECO1_4188 - hypothetical protein 2254 52.65 0 2600601..2601977 - 458 117624568 - APECO1_4187 - putative replicative DNA helicase 2255 49.68 0 2601974..2602921 - 315 117624569 - APECO1_4186 - putative phage replication protein 2256 43.96 -1 2602924..2603196 - 90 117624570 - APECO1_4185 - hypothetical protein 2257 46.46 0 2603219..2603599 - 126 117624571 - APECO1_4184 - hypothetical protein 2258 47.00 0 2603887..2604537 + 216 117624572 - APECO1_4183 - putative phage repressor protein 2259 50.17 0 2604659..2604955 - 98 117624573 - APECO1_4182 - hypothetical protein 2260 48.67 0 2605060..2605359 + 99 117624574 - APECO1_4180 - putative transcription antitermination protein 2261 36.73 -2 2605368..2605838 + 156 117624575 - APECO1_4179 - hypothetical protein 2262 45.54 -1 2606460..2607065 + 201 117624576 - APECO1_4178 - hypothetical protein 2263 43.49 -1 2607065..2607448 + 127 117624577 - APECO1_4177 - hypothetical protein 2264 49.16 0 2607472..2607768 + 98 117624578 - APECO1_4176 - hypothetical protein 2265 44.54 -1 2607817..2608503 - 228 117624579 - APECO1_4175 - hypothetical protein 2266 50.09 0 2608679..2609251 + 190 117624580 - APECO1_4174 - hypothetical protein 2267 45.54 -1 2609618..2609953 - 111 117624581 - APECO1_4173 - hypothetical protein 2268 47.86 0 2610499..2611434 - 311 117624582 dsdC APECO1_4172 - DNA-binding transcriptional regulator DsdC 2269 49.25 0 2611652..2612989 + 445 117624583 dsdX APECO1_4171 - permease DsdX 2270 51.09 0 2613007..2614335 + 442 117624584 dsdA APECO1_4170 - D-serine dehydratase 2271 41.91 -1 2614443..2615981 - 512 117624585 emrY APECO1_4169 - multidrug resistance protein Y 2272 42.23 -1 2615981..2617036 - 351 117624586 emrK APECO1_4168 - EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein 2273 39.84 -2 2617560..2618174 + 204 117624587 evgA APECO1_4167 - DNA-binding transcriptional activator EvgA 2274 40.93 -2 2618179..2621772 + 1197 117624588 evgS APECO1_4166 - hybrid sensory histidine kinase in two-component regulatory system with EvgA 2275 45.46 -1 2621828..2622973 - 381 117624589 yfdE APECO1_4165 - hypothetical protein 2276 45.08 -1 2623047..2623991 - 314 117624590 yfdV APECO1_4164 - putative transporter YfdV 2277 47.14 0 2624061..2625755 - 564 117624591 - APECO1_4163 - putative oxalyl-CoA decarboxylase 2278 47.40 0 2625809..2627059 - 416 117624592 yfdW APECO1_4162 - formyl-coenzyme A transferase 2279 46.23 0 2627571..2628206 - 211 117624593 yfdX APECO1_4161 - hypothetical protein 2280 39.13 -2 2628502..2628777 + 91 117624594 ypdI APECO1_4160 - putative lipoprotein involved in colanic acid biosynthesis 2281 51.57 0 2629449..2630369 + 306 117624595 ddg APECO1_4159 - lipid A biosynthesis palmitoleoyl acyltransferase 2282 55.53 0 2630861..2632099 - 412 117624596 - APECO1_4158 - aminotransferase 2283 51.07 0 2632494..2634173 + 559 117624597 ypdA APECO1_4157 - YpdA, sensory kinase in two-component system with YpdB 2284 47.96 0 2634263..2634925 + 220 117624598 ypdB APECO1_4156 - YpdB, response regulator in two-component system with YpdA 2285 52.68 0 2634938..2635795 + 285 117624599 ypdC APECO1_4155 - putative DNA-binding protein 2286 54.57 0 2635798..2638293 - 831 117624600 ypdD APECO1_4154 - putative phosphoenolpyruvate-protein phosphotransferase YpdD 2287 56.94 +1 2638318..2639355 - 345 117624601 ypdE APECO1_4153 - exoaminopeptidase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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