version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2158 54.19 0 2501297..2502274 - 325 117624471 nuoH APECO1_4283 - NADH dehydrogenase subunit H 2159 56.71 +1 2502271..2505003 - 910 117624472 nuoG APECO1_4282 - NADH dehydrogenase subunit G 2160 55.90 +1 2505050..2506387 - 445 117624473 nuoF APECO1_4281 - NADH dehydrogenase I subunit F 2161 55.89 +1 2506384..2506884 - 166 117624474 nuoE APECO1_4280 - NADH dehydrogenase subunit E 2162 55.52 0 2506887..2508689 - 600 117624475 nuoC APECO1_4279 - bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2163 51.43 0 2508783..2509445 - 220 117624476 nuoB APECO1_4278 - NADH dehydrogenase subunit B 2164 52.70 0 2509461..2509904 - 147 117624477 nuoA APECO1_4277 - NADH dehydrogenase subunit A 2165 38.52 -2 2510051..2510320 - 89 117624478 - APECO1_4276 - hypothetical protein 2166 50.05 0 2510534..2511472 - 312 117624479 lrhA APECO1_4275 - DNA-binding transcriptional repressor of flagellar, motility and chemotaxis protein 2167 50.33 0 2512392..2513609 + 405 117624480 yfbQ APECO1_4274 - aminotransferase AlaT 2168 48.83 0 2513693..2514292 + 199 117624481 yfbR APECO1_4273 - hypothetical protein 2169 52.26 0 2514351..2516183 - 610 117624482 yfbS APECO1_4272 - putative di- and tricarboxylate transporter 2170 56.07 +1 2516270..2516920 - 216 117624483 yfbT APECO1_4271 - putative phosphatase 2171 47.17 0 2516931..2517443 - 170 117624484 yfbU APECO1_4270 - hypothetical protein 2172 50.22 0 2517508..2517963 - 151 117624485 yfbV APECO1_4269 - hypothetical protein 2173 52.54 0 2518301..2519503 + 400 117624486 ackA APECO1_4268 - acetate kinase 2174 51.56 0 2521891..2523432 + 513 117624488 yfcC APECO1_4266 - hypothetical protein 2175 53.59 0 2523465..2524007 - 180 117624489 yfcD APECO1_4265 - putative NUDIX hydrolase 2176 51.35 0 2524065..2524619 - 184 117624490 yfcE APECO1_4264 - phosphodiesterase 2177 52.09 0 2524672..2525316 - 214 117624491 yfcF APECO1_4263 - putative glutathione S-transferase 2178 51.08 0 2525452..2526099 + 215 117624492 yfcG APECO1_4262 - putative S-transferase 2179 44.63 -1 2526156..2526518 + 120 117624493 folX APECO1_4261 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2180 55.15 0 2526539..2527432 + 297 117624494 yfcH APECO1_4260 - putative sugar nucleotide epimerase 2181 46.58 0 2527480..2528370 - 296 117624495 yfcI APECO1_4259 - hypothetical protein 2182 51.03 0 2528566..2529339 - 257 117624496 hisP APECO1_4258 - histidine/lysine/arginine/ornithine transporter subunit 2183 48.81 0 2529347..2530063 - 238 117624497 hisM APECO1_4257 - histidine/lysine/arginine/ornithine transporter subunit 2184 52.26 0 2530060..2530746 - 228 117624498 hisQ APECO1_4256 - histidine transport system permease protein HisQ 2185 48.53 0 2530836..2531618 - 260 117624499 hisJ APECO1_4255 - histidine/lysine/arginine/ornithine transporter subunit 2186 51.21 0 2531839..2532621 - 260 117624500 argT APECO1_4254 - lysine/arginine/ornithine transporter subunit 2187 52.98 0 2532887..2533456 - 189 117624501 ubiX APECO1_4253 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2188 53.29 0 2533551..2535068 - 505 117624502 purF APECO1_4252 - amidophosphoribosyltransferase 2189 49.08 0 2535105..2535593 - 162 117624503 cvpA APECO1_4251 - colicin V production protein 2190 57.16 +1 2536125..2536787 - 220 117624504 dedD APECO1_4250 - hypothetical protein 2191 55.79 +1 2536777..2538045 - 422 117624505 folC APECO1_4249 - bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2192 55.41 0 2538115..2539029 - 304 162317573 accD APECO1_4248 - acetyl-CoA carboxylase subunit beta 2193 47.88 0 2539185..2539844 - 219 117624507 - APECO1_4247 - hypothetical protein 2194 55.60 0 2539927..2540739 - 270 117624508 truA APECO1_4246 - tRNA pseudouridine synthase A 2195 54.83 0 2540739..2541752 - 337 117624509 usg APECO1_4245 - putative semialdehyde dehydrogenase 2196 53.30 0 2541818..2542954 - 378 117624510 pdxB APECO1_4244 - erythronate-4-phosphate dehydrogenase 2197 52.21 0 2543053..2544048 + 331 117624511 div APECO1_4243 - flagella biosynthesis regulator 2198 56.91 +1 2544045..2545223 - 392 117624512 yfcJ APECO1_4242 - hypothetical protein 2199 56.10 +1 2545488..2546708 - 406 117624513 fabB APECO1_4241 - 3-oxoacyl-(acyl carrier protein) synthase I 2200 52.02 0 2546867..2548873 + 668 117624514 mnmC APECO1_4240 - 5-methylaminomethyl-2-thiouridine methyltransferase 2201 52.33 0 2548994..2549272 - 92 117624515 yfcL APECO1_4239 - hypothetical protein 2202 51.55 0 2549306..2549854 - 182 117624516 yfcM APECO1_4238 - hypothetical protein 2203 52.35 0 2549854..2550663 - 269 117624517 yfcA APECO1_4237 - hypothetical protein 2204 55.76 +1 2550663..2551487 - 274 117624518 mepA APECO1_4236 - penicillin-insensitive murein endopeptidase 2205 55.43 0 2551491..2552576 - 361 117624519 aroC APECO1_4235 - chorismate synthase 2206 52.21 0 2552611..2553876 - 421 117624520 prmB APECO1_4234 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2207 48.52 0 2554580..2555422 - 280 117624521 yfcO APECO1_4233 - putative fimbrial adhesin YfcO precursor 2208 53.98 0 2555424..2555951 - 175 117624522 yfcP APECO1_4232 - putative Yfc fimbriae subunit YfcP precursor 2209 53.75 0 2555948..2556427 - 159 117624523 yfcQ APECO1_4231 - putative Yfc fimbriae subunit YfcQ precursor 2210 54.40 0 2556424..2556969 - 181 117624524 yfcR APECO1_4230 - hypothetical protein 2211 55.51 0 2556944..2557696 - 250 117624525 yfcS APECO1_4229 - putative periplasmic chaperone YfcS precursor 2212 54.35 0 2557716..2560370 - 884 117624526 yfcU APECO1_4228 - putative outer membrane usher YfcU precursor 2213 49.73 0 2560238..2560987 - 249 117624527 yfcV APECO1_4227 - putative Yfc fimbriae subunit YfcV precursor 2214 52.06 0 2561553..2562038 - 161 117624528 sixA APECO1_4226 - phosphohistidine phosphatase 2215 52.21 0 2562241..2564385 - 714 117624529 fadJ APECO1_4225 - multifunctional fatty acid oxidation complex subunit alpha 2216 55.84 +1 2564385..2565695 - 436 117624530 fadI APECO1_4224 - 3-ketoacyl-CoA thiolase 2217 51.46 0 2565876..2566184 - 102 117624531 yfcZ APECO1_4223 - hypothetical protein 2218 42.06 -1 2566245..2566496 - 83 117624532 - APECO1_4222 - hypothetical protein 2219 50.63 0 2566526..2567872 + 448 117624533 fadL APECO1_4221 - long-chain fatty acid outer membrane transporter 2220 50.93 0 2567930..2568685 - 251 117624534 vacJ APECO1_4220 - putative lipoprotein VacJ 2221 48.66 0 2568979..2569911 + 310 117624535 yfdC APECO1_4219 - putative transport protein 2222 47.75 0 2570223..2571380 + 385 117624536 - APECO1_4218 - putative phage integrase 2223 37.99 -2 2571620..2572543 - 307 117624537 - APECO1_4217 - putative capsule O-acetyl transferase 2224 44.13 -1 2572697..2575642 - 981 117624538 sia APECO1_4216 - putative endo-alpha-sialidase 2225 43.63 -1 2575743..2576645 - 300 117624539 - APECO1_4215 - putative antirepressor protein 2226 45.07 -1 2577393..2577929 + 178 117624540 - APECO1_4214 - hypothetical protein 2227 37.78 -2 2577978..2578427 - 149 117624541 - APECO1_4213 - hypothetical protein 2228 43.21 -1 2578436..2579002 - 188 117624542 - APECO1_4212 - hypothetical protein 2229 39.39 -2 2579199..2579528 + 109 117624543 - APECO1_42112 - hypothetical protein 2230 47.62 0 2579546..2581561 - 671 117624544 - APECO1_4211 - hypothetical protein 2231 48.76 0 2581558..2583009 - 483 117624545 - APECO1_4210 - putative phage injection protein 2232 51.52 0 2583020..2583712 - 230 117624546 - APECO1_4209 - putative DNA transfer protein 2233 50.00 0 2583715..2584170 - 151 117624547 - APECO1_4208 - head assembly protein 2234 49.15 0 2584170..2584871 - 233 117624548 - APECO1_4207 - putative DNA stabilization protein 2235 50.81 0 2584871..2586289 - 472 117624549 - APECO1_4206 - putative DNA stabilization protein 2236 48.92 0 2586299..2586760 - 153 117624550 - APECO1_4205 - putative DNA stabilization protein 2237 50.64 0 2586971..2588224 - 417 117624551 - APECO1_4204 - hypothetical protein 2238 50.67 0 2588243..2589136 - 297 117624552 - APECO1_4203 - putative phage scaffold protein 2239 51.66 0 2589227..2591425 - 732 117624553 - APECO1_4202 - putative phage portal protein 2240 51.20 0 2591427..2592842 - 471 117624554 - APECO1_4201 - phage terminase large subunit 2241 47.39 0 2592839..2593279 - 146 117624555 - APECO1_4200 - hypothetical protein 2242 46.91 0 2593282..2593524 - 80 117624556 - APECO1_4199 - hypothetical protein 2243 44.44 -1 2593752..2594363 - 203 117624557 - APECO1_4198 - hypothetical protein 2244 50.91 0 2594640..2595077 - 145 117624558 - APECO1_4197 - hypothetical protein 2245 50.31 0 2595074..2595550 - 158 117624559 - APECO1_4196 - putative endolysin 2246 48.46 0 2595534..2595857 - 107 117624560 - APECO1_4195 - putative holin 2247 45.09 -1 2596454..2596972 - 172 117624561 - APECO1_4194 - putative antitermination protein 2248 49.04 0 2597154..2597516 - 120 117624562 - APECO1_4193 - Holliday junction resolvase 2249 51.89 0 2597513..2597803 - 96 117624563 - APECO1_4192 - hypothetical protein 2250 47.03 0 2597803..2598525 - 240 117624564 roi APECO1_4191 - DNA-binding protein Roi 2251 43.19 -1 2598687..2599112 - 141 117624565 - APECO1_4190 - hypothetical protein 2252 49.04 0 2599282..2599542 - 86 117624566 - APECO1_4189 - hypothetical protein 2253 48.89 0 2599892..2600206 - 104 117624567 - APECO1_4188 - hypothetical protein 2254 52.65 0 2600601..2601977 - 458 117624568 - APECO1_4187 - putative replicative DNA helicase 2255 49.68 0 2601974..2602921 - 315 117624569 - APECO1_4186 - putative phage replication protein 2256 43.96 -1 2602924..2603196 - 90 117624570 - APECO1_4185 - hypothetical protein 2257 46.46 0 2603219..2603599 - 126 117624571 - APECO1_4184 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0