version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1783 51.92 0 2033648..2035342 - 564 117624095 yedQ APECO1_994 - hypothetical protein 1784 53.16 0 2035774..2036691 - 305 117624096 yedI APECO1_995 - hypothetical protein 1785 53.75 0 2036864..2037784 + 306 117624097 yedA APECO1_996 - hypothetical protein 1786 56.90 +1 2037773..2038243 - 156 117624098 vsr APECO1_997 - DNA mismatch endonuclease, patch repair protein 1787 52.22 0 2038224..2039642 - 472 117624099 dcm APECO1_998 - DNA cytosine methylase 1788 54.74 0 2039709..2040404 - 231 117624100 yedJ APECO1_999 - hypothetical protein 1789 49.45 0 2040444..2040809 - 121 117624101 yedR APECO1_1000 - Outer membrane protein N precursor 1790 43.02 -1 2041345..2042490 + 381 117624102 ompN APECO1_1001 - Outer membrane protein N precursor 1791 48.83 0 2043085..2043936 + 283 117624103 hchA APECO1_1002 - chaperone protein HchA 1792 39.66 -2 2044043..2045401 - 452 117624104 yedV APECO1_1003 - putative 2-component sensor protein 1793 43.68 -1 2045401..2046183 - 260 117624105 yedW APECO1_1004 - transcriptional regulatory protein YedW 1794 42.03 -1 2046205..2046618 + 137 117624106 yedX APECO1_1005 - hypothetical protein 1795 52.14 0 2046727..2047731 + 334 117624107 yedY APECO1_1006 - putative sulfite oxidase subunit YedY 1796 48.27 0 2047732..2048367 + 211 117624108 yedZ APECO1_1007 - putative sulfite oxidase subunit YedZ 1797 35.92 -2 2048927..2049274 + 115 117624109 yodA APECO1_1008 - YodA 1798 36.97 -2 2049310..2049639 + 109 117624110 - APECO1_1009 - hypothetical protein 1799 38.72 -2 2050863..2051642 + 259 117624111 - APECO1_1010 - hypothetical protein 1800 52.08 0 2051722..2052057 + 111 117624112 - APECO1_1011 - hypothetical protein 1801 42.65 -1 2052150..2052428 - 92 117624113 - APECO1_1012 - hypothetical protein 1802 47.75 0 2052425..2054491 - 688 117624114 - APECO1_6001 - hypothetical protein 1803 55.79 +1 2054544..2058026 - 1160 117624115 - APECO1_6002 - putative tail component of prophage 1804 59.38 +1 2058087..2058758 - 223 117624116 - APECO1_6003 - tail assembly protein I 1805 59.14 +1 2058656..2059399 - 247 117624117 - APECO1_6004 - tail assembly protein 1806 54.43 0 2059398..2060108 + 236 117624118 - APECO1_6005 - hypothetical protein 1807 50.00 0 2060102..2060443 - 113 117624119 - APECO1_6006 - putative minor tail protein 1808 52.00 0 2060436..2063681 - 1081 117624120 - APECO1_6007 - phage-related minor tail protein 1809 52.92 0 2063722..2064012 - 96 117624121 - APECO1_1015 - phage-related minor tail protein 1810 50.39 0 2064024..2064410 - 128 117624122 - APECO1_1016 - putative tail assembly chaperone 1811 49.21 0 2064410..2065165 - 251 117624123 gp14 APECO1_1017 - phage major tail subunit 1812 53.62 0 2065174..2065518 - 114 117624124 - APECO1_1018 - hypothetical protein 1813 52.67 0 2065515..2065964 - 149 117624125 - APECO1_1019 - hypothetical protein 1814 56.05 +1 2065961..2066299 - 112 117624126 gp7 APECO1_1020 - putative head-tail adaptor 1815 49.69 0 2066308..2066796 - 162 117624127 - APECO1_1021 - hypothetical protein 1816 51.48 0 2066702..2067919 - 405 117624128 - APECO1_1022 - putative phage capsid protein 1817 51.33 0 2067934..2068533 - 199 117624129 - APECO1_1023 - putative phage capsid protease 1818 50.37 0 2068526..2069752 - 408 117624130 - APECO1_1024 - putative phage portal protein 1819 51.14 0 2069900..2071657 - 585 117624131 - APECO1_1025 - putative phage terminase 1820 53.21 0 2071657..2072139 - 160 117624132 - APECO1_1026 - putative phage terminase 1821 54.42 0 2072287..2072637 - 116 117624133 hnhC APECO1_1027 - HnhC 1822 54.49 0 2072680..2073147 - 155 117624134 - APECO1_1028 - putative endopeptidase 1823 52.25 0 2073144..2073677 - 177 117624135 - APECO1_1029 - putative phage lysozyme 1824 47.29 0 2073741..2074091 - 116 117624136 ydfR APECO1_1030 - hypothetical protein 1825 41.74 -1 2075039..2075752 - 237 117624137 - APECO1_1031 - putative inner membrane protein 1826 46.26 0 2075982..2076677 - 231 117624138 - APECO1_1032 - putative Q antiterminator encoded by prophage CP-933P 1827 52.73 0 2076668..2077033 - 121 117624139 - APECO1_1033 - Holliday junction resolvase 1828 53.41 0 2077034..2078089 - 351 117624140 - APECO1_1034 - hypothetical protein 1829 47.29 0 2079275..2079790 - 171 117624141 - APECO1_1035 - hypothetical protein 1830 44.36 -1 2080232..2080621 - 129 117624142 - APECO1_1036 - hypothetical protein 1831 49.04 0 2080590..2080901 - 103 117624143 - APECO1_1037 - hypothetical protein 1832 47.79 0 2080917..2081324 - 135 117624144 - APECO1_1038 - hypothetical protein 1833 54.04 0 2081365..2082441 - 358 117624145 - APECO1_1040 - hypothetical protein 1834 51.64 0 2082507..2082932 - 141 117624146 - APECO1_1041 - hypothetical protein 1835 39.45 -2 2082929..2083255 - 108 117624147 - APECO1_1042 - putative regulatory protein 1836 40.71 -2 2083263..2083682 + 139 117624148 - APECO1_1043 - putative transcriptional regulator 1837 46.22 0 2083983..2084339 + 118 117624149 - APECO1_1044 - hypothetical protein 1838 53.74 0 2084633..2084926 - 97 117624150 - APECO1_1045 - hypothetical protein 1839 41.74 -1 2085001..2085333 - 110 117624151 - APECO1_1046 - hypothetical protein 1840 43.80 -1 2085328..2085585 + 85 117624152 - APECO1_1047 - hypothetical protein 1841 49.19 0 2085665..2088136 + 823 117624153 - APECO1_1048 - hypothetical protein 1842 42.40 -1 2088398..2089423 + 341 117624154 - APECO1_1049 - putative phage integrase 1843 45.64 -1 2089620..2090456 + 278 117624155 - APECO1_1050 - hypothetical protein 1844 53.58 0 2091013..2091975 + 320 117624156 - APECO1_1051 - putative phage integrase 1845 55.17 0 2092250..2093554 - 434 117624157 - APECO1_1052 - salicylate synthase Irp9 1846 59.68 +1 2093582..2094970 - 462 117624158 ybtX APECO1_1054 - hypothetical protein 1847 58.31 +1 2094855..2096684 - 609 117624159 - APECO1_1055 - putative ABC transporter protein 1848 57.18 +1 2096644..2098446 - 600 117624160 ybtP APECO1_1056 - putative inner membrane ABC-transporter 1849 56.56 +1 2098613..2099572 + 319 117624161 - APECO1_1057 - putative AraC type regulator 1850 60.07 +1 2099745..2105870 + 2041 117624162 irp2 APECO1_1058 - yersiniabactin biosynthetic protein 1851 60.67 +2 2105958..2115119 + 3053 117624163 irp1 APECO1_1059 - yersiniabactin biosynthetic protein 1852 60.31 +1 2115444..2116544 + 366 117624164 ybtU APECO1_1060 - yersiniabactin biosynthetic protein 1853 58.71 +1 2116541..2117344 + 267 117624165 ybtT APECO1_1061 - yersiniabactin biosynthetic protein YbtT 1854 58.81 +1 2117348..2118925 + 525 117624166 ybtE APECO1_1062 - yersiniabactin siderophore biosynthetic protein 1855 56.48 +1 2119056..2121077 + 673 117624167 fyuA APECO1_1063 - pesticin/yersiniabactin receptor protein 1856 43.62 -1 2121671..2122477 + 268 117624168 - APECO1_1064 - hypothetical protein 1857 48.70 0 2122610..2124568 + 652 117624169 - APECO1_1065 - putative autotransporter 1858 38.75 -2 2124696..2125748 - 350 117624170 - APECO1_1066 - hypothetical protein 1859 50.49 0 2126063..2127379 + 438 117624171 - APECO1_1067 - shikimate transporter 1860 49.43 0 2127433..2128935 + 500 117624172 amn APECO1_1068 - AMP nucleosidase 1861 39.33 -2 2129278..2129994 + 238 117624173 - APECO1_1069 - hypothetical protein 1862 37.85 -2 2130050..2130337 - 95 117624174 - APECO1_1070 - hypothetical protein 1863 49.30 0 2130624..2132114 - 496 117624175 yeeO APECO1_6020 - hypothetical protein 1864 47.95 0 2132388..2133338 - 316 117624176 cbl APECO1_6021 - transcriptional regulator Cbl 1865 48.80 0 2133440..2134357 - 305 117624177 nac APECO1_6022 - nitrogen assimilation transcriptional regulator 1866 49.89 0 2134815..2135750 - 311 117624178 erfK APECO1_6023 - hypothetical protein 1867 52.31 0 2135812..2136891 - 359 117624179 cobT APECO1_1072 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1868 52.56 0 2136903..2137682 - 259 117624180 cobS APECO1_1073 - cobalamin synthase 1869 50.55 0 2137643..2138188 - 181 117624181 cobU APECO1_1074 - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1870 47.94 0 2140861..2141175 - 104 117624182 - APECO1_1075 - hypothetical protein 1871 41.40 -2 2141294..2142508 + 404 117624183 - APECO1_1076 - putative carbohydrate kinase 1872 40.05 -2 2142522..2143280 + 252 117624184 - APECO1_1077 - hypothetical protein 1873 46.79 0 2143337..2144302 + 321 117624185 - APECO1_1078 - hypothetical protein 1874 47.54 0 2144305..2145339 + 344 117624186 - APECO1_1079 - putative phosphotriesterase-related protein 1875 51.42 0 2145991..2146974 - 327 117624187 - APECO1_1080 - putative transposase 1876 49.56 0 2147032..2147370 - 112 117624188 - APECO1_1081 - hypothetical protein 1877 52.32 0 2147654..2148148 - 164 117624189 - APECO1_1082 - hypothetical protein 1878 52.45 0 2148049..2148456 - 135 117624190 - APECO1_1083 - hypothetical protein 1879 56.27 +1 2148710..2149315 - 201 117624191 - APECO1_1084 - hypothetical protein 1880 49.07 0 2150106..2150429 + 107 117624192 - APECO1_1085 - hypothetical protein 1881 55.39 0 2150605..2151012 + 135 117624193 - APECO1_1086 - putative transcriptional regulator 1882 50.49 0 2151091..2151708 + 205 117624194 - APECO1_1087 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0