version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 130 41.45 -2 158268..158834 - 188 117622425 yadM APECO1_1847 - putative fimbrial-like adhesin protein 131 44.77 -1 158851..161439 - 862 117622426 htrE APECO1_1846 - putative outer membrane usher protein 132 44.26 -1 161474..162214 - 246 117622427 ecpD APECO1_1845 - putative chaperone protein EcpD 133 42.60 -1 162323..162937 - 204 117622428 yadN APECO1_1844 - putative fimbrial-like adhesin protein 134 49.58 0 163275..163754 - 159 117622429 folK APECO1_1843 - 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 135 56.26 +1 163751..165115 - 454 117622430 pcnB APECO1_1842 - poly(A) polymerase I 136 54.18 0 165208..166104 - 298 162317587 yadB APECO1_1841 - glutamyl-Q tRNA(Asp) synthetase 137 52.32 0 166171..166644 - 157 117622432 dksA APECO1_1840 - DnaK transcriptional regulator DksA 138 49.79 0 166804..167508 - 234 117622433 - APECO1_1839 - sugar fermentation stimulation protein A 139 56.45 +1 167523..168266 - 247 117622434 yadP APECO1_1838 - 2'-5' RNA ligase 140 56.61 +1 168082..170556 + 824 117622435 hrpB APECO1_1837 - ATP-dependent RNA helicase HrpB 141 54.83 0 170650..173184 + 844 117622436 mrcB APECO1_1836 - penicillin-binding protein 1b 142 51.43 0 173404..175647 + 747 117622437 fhuA APECO1_1835 - ferrichrome outer membrane transporter 143 56.27 +1 175698..176495 + 265 117622438 fhuC APECO1_1834 - iron-hydroxamate transporter ATP-binding subunit 144 54.32 0 176495..177385 + 296 117622439 fhuD APECO1_1833 - iron-hydroxamate transporter substrate-binding subunit 145 59.71 +1 177382..179364 + 660 117622440 fhuB APECO1_1832 - iron-hydroxamate transporter permease subunit 146 55.66 +1 179399..180679 - 426 117622441 hemL APECO1_1831 - glutamate-1-semialdehyde aminotransferase 147 53.59 0 180904..182325 + 473 117622442 yadQ APECO1_1830 - chloride channel protein 148 50.72 0 182407..182751 + 114 117622443 yadR APECO1_1829 - iron-sulfur cluster insertion protein ErpA 149 52.88 0 182798..183421 - 207 117622444 yadS APECO1_1828 - hypothetical protein 150 53.18 0 183459..184259 - 266 117622445 yadT APECO1_1827 - vitamin B12-transporter protein BtuF 151 52.93 0 184252..184950 - 232 117622446 - APECO1_1826 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 152 47.89 0 185034..186551 + 505 117622447 dgt APECO1_1825 - deoxyguanosinetriphosphate triphosphohydrolase 153 53.75 0 186681..188105 + 474 117622448 htrA APECO1_1824 - serine endoprotease 154 53.14 0 188283..189413 + 376 117622449 cdaR APECO1_1823 - carbohydrate diacid transcriptional activator CdaR 155 44.70 -1 189467..189853 - 128 117622450 - APECO1_1822 - hypothetical protein 156 52.73 0 190165..190989 - 274 117622451 dapD APECO1_1821 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 157 53.61 0 191020..193692 - 890 117622452 glnD APECO1_1820 - PII uridylyl-transferase 158 50.82 0 193754..194548 - 264 117622453 map APECO1_1819 - methionine aminopeptidase 159 51.38 0 194916..195641 + 241 117622454 rpsB APECO1_1818 - 30S ribosomal protein S2 160 49.68 0 195593..196522 - 309 117622455 - APECO1_1817 - hypothetical protein 161 52.75 0 196774..197499 + 241 117622456 pyrH APECO1_1816 - uridylate kinase 162 51.15 0 197685..198206 + 173 117622457 frr APECO1_1815 - ribosome recycling factor 163 52.63 0 198298..199494 + 398 117622458 dxr APECO1_1814 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 164 49.61 0 199680..200441 + 253 117622459 - APECO1_1813 - undecaprenyl pyrophosphate synthase 165 50.48 0 200484..201311 + 275 117622460 cdsA APECO1_1812 - CDP-diglyceride synthase 166 50.78 0 201323..202675 + 450 117622461 yaeL APECO1_1811 - zinc metallopeptidase 167 50.18 0 202705..205137 + 810 117622462 - APECO1_1810 - outer membrane protein assembly factor YaeT 168 50.00 0 205259..205744 + 161 117622463 - APECO1_1809 - periplasmic chaperone 169 52.14 0 205748..206773 + 341 117622464 lpxD APECO1_1808 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 170 52.23 0 206953..207333 + 126 117622465 fabZ APECO1_1807 - (3R)-hydroxymyristol acyl carrier protein dehydratase 171 53.36 0 207337..208125 + 262 117622466 lpxA APECO1_1806 - UDP-N-acetylglucosamine acyltransferase 172 53.79 0 208125..209273 + 382 117622467 lpxB APECO1_1805 - lipid-A-disaccharide synthase 173 55.95 +1 209270..209866 + 198 117622468 rnhB APECO1_1804 - ribonuclease HII 174 54.41 0 209903..213385 + 1160 117622469 dnaE APECO1_1803 - DNA polymerase III subunit alpha 175 52.71 0 213398..214357 + 319 117622470 accA APECO1_1802 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 176 51.35 0 214455..216596 + 713 117622471 ldcC APECO1_1801 - lysine decarboxylase, constitutive 177 50.84 0 216626..217042 + 138 117622472 yaeR APECO1_1800 - hypothetical protein 178 57.20 +1 217107..218405 + 432 117622473 tilS APECO1_1799 - tRNA(Ile)-lysidine synthetase 179 47.89 0 218453..218713 - 86 117622474 rof APECO1_1798 - Rho-binding antiterminator 180 52.20 0 219066..219611 + 181 117622475 yaeQ APECO1_1797 - hypothetical protein 181 55.08 0 219608..220030 + 140 117622476 yaeJ APECO1_1796 - hypothetical protein 182 52.04 0 220044..220754 + 236 117622477 cutF APECO1_1795 - lipoprotein involved with copper homeostasis and adhesion 183 47.52 0 220910..221734 - 274 117622478 yaeF APECO1_1794 - hypothetical protein 184 53.98 0 221787..223505 - 572 117622479 proS APECO1_1793 - prolyl-tRNA synthetase 185 54.24 0 223616..224323 - 235 117622480 yaeB APECO1_1792 - hypothetical protein 186 53.58 0 224320..224724 - 134 117622481 rcsF APECO1_1791 - outer membrane lipoprotein 187 49.02 0 224842..225657 - 271 117622482 metQ APECO1_1790 - DL-methionine transporter substrate-binding subunit 188 51.53 0 225697..226350 - 217 117622483 metI APECO1_1789 - DL-methionine transporter permease subunit 189 52.42 0 226343..227374 - 343 117622484 metN APECO1_1788 - DL-methionine transporter ATP-binding subunit 190 50.26 0 227562..228134 + 190 117622485 yaeD APECO1_1787 - D,D-heptose 1,7-bisphosphate phosphatase 191 46.27 0 233893..234696 + 267 117622489 dkgB APECO1_1783 - 2,5-diketo-D-gluconate reductase B 192 49.07 0 234693..235607 - 304 117622490 - APECO1_1782 - putative transcriptional regulator LYSR-type 193 51.76 0 235824..236648 + 274 117622491 yafD APECO1_1781 - hypothetical protein 194 49.16 0 236726..237496 + 256 117622492 yafE APECO1_1780 - hypothetical protein 195 52.39 0 237543..238901 - 452 117622493 mltD APECO1_1779 - membrane-bound lytic murein transglycosylase D 196 39.81 -2 238973..239728 - 251 117622494 gloB APECO1_1778 - hydroxyacylglutathione hydrolase 197 49.80 0 239744..240484 + 246 117622495 yafS APECO1_1777 - putative S-adenosyl-L-methionine-dependent methyltransferase 198 48.36 0 240481..241059 - 192 117622496 rnhA APECO1_1776 - ribonuclease H 199 51.28 0 241004..241744 + 246 117622497 dnaQ APECO1_1775 - DNA polymerase III subunit epsilon 200 39.44 -2 242282..243067 + 261 117622499 yafT APECO1_1773 - putative aminopeptidase 201 50.83 0 243407..243886 - 159 117622500 aec32 APECO1_1772 - hypothetical protein 202 55.80 +1 243904..245403 - 499 117622501 aec31 APECO1_1771 - hypothetical protein 203 57.54 +1 245273..248800 - 1175 117622502 aec30 APECO1_1770 - hypothetical protein 204 57.03 +1 248820..250262 - 480 117622503 aec29 APECO1_1769 - hypothetical protein 205 61.83 +2 250267..251010 - 247 117622504 aec28 APECO1_1768 - hypothetical protein 206 58.77 +1 251007..253766 - 919 117622505 aec27 APECO1_1767 - putative ATPase with chaperone activity 207 52.68 0 253776..254540 - 254 117622506 aec26 APECO1_1766 - hypothetical protein 208 57.76 +1 254545..255891 - 448 117622507 aec25 APECO1_1765 - hypothetical protein 209 52.76 0 255894..256418 - 174 117622508 aec24 APECO1_1764 - hypothetical protein 210 59.32 +1 256415..257707 - 430 117622509 aec23 APECO1_1763 - hypothetical protein 211 56.57 +1 257712..258761 - 349 117622510 aec22 APECO1_1762 - hypothetical protein 212 54.35 0 258725..260575 - 616 117622511 - APECO1_1761 - hypothetical protein 213 48.12 0 260572..260997 - 141 117622512 aec19 APECO1_1760 - hypothetical protein 214 53.13 0 261002..262486 - 494 117622513 aec18 APECO1_1759 - hypothetical protein 215 48.41 0 262509..263012 - 167 117622514 aec17 APECO1_1758 - hypothetical protein 216 54.53 0 263718..264236 + 172 117622515 aec16 APECO1_1757 - hypothetical protein 217 55.47 0 264457..266439 + 660 117622516 aec15 APECO1_1756 - hypothetical protein 218 36.96 -2 266546..267592 + 348 117622517 aec14 APECO1_1755 - hypothetical protein 219 39.03 -2 267585..269024 + 479 117622518 - APECO1_1753 - hypothetical protein 220 30.58 -2 268999..269289 + 96 117622519 aec11 APECO1_1752 - hypothetical protein 221 40.33 -2 269826..270311 + 161 117622520 yhhI APECO1_1751 - putative transposase 222 34.72 -2 270540..271043 + 167 117622521 aec8 APECO1_1750 - hypothetical protein 223 38.01 -2 271113..271625 + 170 117622522 aec7 APECO1_1749 - hypothetical protein 224 54.86 0 271896..272666 - 256 117622523 yafV APECO1_1748 - hypothetical protein 225 50.84 0 272820..273293 + 157 117622524 ivy APECO1_1747 - vertebrate C-lysozyme inhibitor 226 56.07 +1 273336..275780 - 814 162317586 fadE APECO1_1746 - acyl-CoA dehydrogenase 227 48.58 0 275858..276598 + 246 117622526 gmhA APECO1_1745 - phosphoheptose isomerase 228 52.86 0 276804..277571 + 255 117622527 yafJ APECO1_1744 - putative amidotransferase 229 48.99 0 277542..278282 - 246 117622528 yafK APECO1_1743 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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