version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1447 43.81 -1 1661397..1661711 - 104 117623754 - APECO1_652 - PTS system, cellobiose-specific IIA component 1448 43.31 -1 1661736..1663058 - 440 117623755 - APECO1_653 - hypothetical protein 1449 41.67 -1 1663173..1663484 - 103 117623756 - APECO1_654 - PTS system, cellobiose-specific IIB component 1450 40.92 -2 1663683..1664381 + 232 117623757 - APECO1_655 - putative transcriptional regulator 1451 49.62 0 1664426..1665346 - 306 117623758 ydeD APECO1_656 - O-acetylserine/cysteine export protein 1452 49.75 0 1665520..1666707 + 395 117623759 ydeE APECO1_657 - putative MFS-type transporter YdeE 1453 44.48 -1 1667148..1668044 - 298 117623760 ydeH APECO1_658 - hypothetical protein 1454 50.24 0 1668546..1670591 - 681 117623761 dcp APECO1_659 - dipeptidyl carboxypeptidase II 1455 51.14 0 1670728..1671474 + 248 117623762 ydfG APECO1_6592 - 3-hydroxy acid dehydrogenase 1456 50.22 0 1671563..1672249 + 228 117623763 - APECO1_660 - hypothetical protein 1457 49.56 0 1672665..1674125 - 486 117623765 - APECO1_662 - putative oxidoreductase 1458 45.59 -1 1674626..1675669 - 347 117623766 rspB APECO1_663 - putative dehydrogenase 1459 51.04 0 1675657..1676904 - 415 117623767 rspA APECO1_664 - starvation sensing protein RspA 1460 51.79 0 1677077..1677412 - 111 117623768 ynfA APECO1_665 - hypothetical protein 1461 50.58 0 1677538..1677879 + 113 117623769 ynfB APECO1_666 - hypothetical protein 1462 46.88 0 1677914..1678474 + 186 117623770 - APECO1_667 - spermidine N1-acetyltransferase 1463 43.51 -1 1678477..1679223 - 248 117623771 ynfC APECO1_668 - hypothetical protein 1464 53.16 0 1679253..1679600 + 115 117623772 ynfD APECO1_669 - hypothetical protein 1465 50.35 0 1679799..1682225 + 808 117623773 ynfE APECO1_670 - putative dimethyl sulfoxide reductase chain YnfE precursor 1466 50.68 0 1682283..1684709 + 808 117623774 ynfF APECO1_671 - putative dimethyl sulfoxide reductase chain YnfF precursor 1467 52.10 0 1684720..1685337 + 205 117623775 dmsB APECO1_672 - dimethyl sulfoxide reductase, anaerobic, subunit B 1468 52.15 0 1685099..1686193 + 364 117623776 ynfH APECO1_673 - oxidoreductase, membrane subunit 1469 53.21 0 1686227..1686850 + 207 117623777 ynfI APECO1_674 - twin-argninine leader-binding protein DmsD 1470 53.86 0 1686988..1688229 + 413 117623778 ynfJ APECO1_675 - putative voltage-gated ClC-type chloride channel ClcB 1471 52.12 0 1688182..1688889 - 235 117623779 ynfK APECO1_676 - putative dithiobiotin synthetase 1472 51.92 0 1689002..1690222 - 406 117623780 mlc APECO1_677 - Mlc protein 1473 52.13 0 1690357..1691250 - 297 117623781 ynfL APECO1_678 - putative transcriptional regulator 1474 52.63 0 1691357..1692610 + 417 117623782 ynfM APECO1_679 - putative transporter 1475 49.40 0 1693008..1693343 + 111 117623783 asr APECO1_680 - acid shock protein precursor 1476 52.55 0 1693619..1694440 + 273 117623784 ydgD APECO1_681 - putative protease 1477 51.52 0 1694479..1694808 - 109 117623785 - APECO1_682 - multidrug efflux system protein MdtI 1478 43.17 -1 1694795..1695160 - 121 117623786 ydgF APECO1_683 - multidrug efflux system protein MdtJ 1479 49.86 0 1695571..1696605 + 344 117623787 tqsA APECO1_684 - putative transport protein 1480 52.34 0 1696630..1698018 - 462 117623788 pntB APECO1_685 - pyridine nucleotide transhydrogenase 1481 52.36 0 1698029..1699615 - 528 117623789 pntA APECO1_686 - NAD(P) transhydrogenase subunit alpha 1482 51.01 0 1700085..1701029 + 314 117623790 ydgH APECO1_687 - hypothetical protein 1483 53.65 0 1701215..1702597 + 460 117623791 ydgI APECO1_688 - putative arginine/ornithine antiporter 1484 50.90 0 1702634..1703356 + 240 117623792 ydgB APECO1_689 - short chain dehydrogenase 1485 47.62 0 1703353..1703688 - 111 117623793 ydgC APECO1_690 - hypothetical protein 1486 49.07 0 1703781..1704536 + 251 117623794 rstA APECO1_691 - DNA-binding transcriptional regulator RstA 1487 51.23 0 1704540..1705841 + 433 117623795 rstB APECO1_692 - sensor protein RstB 1488 49.68 0 1705905..1706846 + 313 117623796 tus APECO1_693 - DNA replication terminus site-binding protein 1489 54.27 0 1706843..1708246 - 467 117623797 fumC APECO1_694 - fumarate hydratase 1490 50.94 0 1708389..1710035 - 548 117623798 fumA APECO1_695 - fumarate hydratase, aerobic class I 1491 50.85 0 1710234..1711409 + 391 117623799 manA APECO1_696 - mannose-6-phosphate isomerase 1492 49.57 0 1711510..1713018 + 502 117623800 - APECO1_697 - hypothetical protein 1493 46.92 0 1713063..1714328 - 421 117623801 uidC APECO1_698 - putative outer membrane porin protein 1494 51.82 0 1714367..1715740 - 457 117623802 uidB APECO1_699 - glucuronide transporter 1495 52.04 0 1715737..1717548 - 603 117623803 uidA APECO1_700 - beta-D-glucuronidase 1496 50.59 0 1717938..1718528 - 196 117623804 uidR APECO1_701 - repressor for uid operon 1497 47.14 0 1718757..1719524 - 255 117623805 hdhA APECO1_702 - 7-alpha-hydroxysteroid dehydrogenase 1498 54.42 0 1719636..1720664 - 342 117623806 malI APECO1_703 - DNA-binding transcriptional repressor MalI 1499 52.29 0 1720839..1722431 + 530 117623807 malX APECO1_704 - bifunctional maltose and glucose-specific PTS system components IICB 1500 51.32 0 1722441..1723613 + 390 117623808 malY APECO1_705 - bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon 1501 53.69 0 1723717..1724718 + 333 117623809 add APECO1_706 - adenosine deaminase 1502 53.52 0 1724754..1725833 - 359 117623810 ydgJ APECO1_707 - putative oxidoreductase 1503 34.09 -2 1726251..1726514 + 87 117623811 - APECO1_708 - hypothetical protein 1504 48.98 0 1726736..1727176 + 146 117623812 ydgK APECO1_709 - hypothetical protein 1505 50.86 0 1727253..1727834 + 193 117623813 rnfA APECO1_710 - Na(+)-translocating NADH-quinone reductase subunit E 1506 55.09 0 1727834..1728412 + 192 117623814 rnfB APECO1_711 - electron transport complex protein RnfB 1507 54.72 0 1728405..1730531 + 708 117623815 rnfC APECO1_712 - electron transport complex protein RnfC 1508 52.88 0 1730532..1731590 + 352 117623816 rnfD APECO1_713 - electron transport complex protein RnfD 1509 52.82 0 1731594..1732214 + 206 117623817 rnfG APECO1_714 - electron transport complex protein RnfG 1510 53.02 0 1732218..1732913 + 231 117623818 rnfE APECO1_715 - SoxR-reducing system protein RsxE 1511 48.27 0 1732913..1733548 + 211 117623819 nth APECO1_716 - endonuclease III 1512 51.16 0 1734159..1735661 + 500 117623820 tppB APECO1_717 - putative tripeptide transporter permease 1513 50.00 0 1735766..1736371 + 201 117623821 gst APECO1_718 - glutathionine S-transferase 1514 51.97 0 1736415..1737278 - 287 117623822 pdxY APECO1_719 - pyridoxamine kinase 1515 51.90 0 1737337..1738623 - 428 117623823 tyrS APECO1_720 - tyrosyl-tRNA synthetase 1516 51.45 0 1738740..1739396 - 218 117623824 pdxH APECO1_721 - pyridoxamine 5'-phosphate oxidase 1517 46.06 -1 1739455..1739784 - 109 117623825 ydhA APECO1_722 - lysozyme inhibitor 1518 55.50 0 1739882..1740991 - 369 117623826 anmK APECO1_723 - anhydro-N-acetylmuramic acid kinase 1519 50.43 0 1741265..1741732 + 155 117623827 slyB APECO1_724 - outer membrane lipoprotein SlyB precursor 1520 47.62 0 1741779..1742219 - 146 117623828 slyA APECO1_725 - transcriptional regulator SlyA 1521 49.60 0 1742644..1743387 + 247 117623829 ydhJ APECO1_726 - hypothetical protein 1522 52.96 0 1743509..1745521 + 670 117623830 ydhK APECO1_727 - inner membrane protein 1523 52.36 0 1745522..1746094 - 190 117623831 sodC APECO1_728 - superoxide dismutase 1524 51.95 0 1746124..1747020 - 298 117623832 ydhF APECO1_729 - oxidoreductase YdhF 1525 52.50 0 1747411..1748010 + 199 117623833 ydhM APECO1_731 - putative DNA-binding transcriptional regulator 1526 53.19 0 1748047..1749144 + 365 117623834 nemA APECO1_732 - N-ethylmaleimide reductase 1527 50.74 0 1749225..1749632 + 135 117623835 gloA APECO1_733 - glyoxalase I 1528 54.63 0 1749735..1750382 + 215 117623836 rnt APECO1_734 - ribonuclease T 1529 52.30 0 1750754..1751101 - 115 117623837 ydhO APECO1_735 - hypothetical protein 1530 49.83 0 1752379..1752960 + 193 117623838 sodB APECO1_736 - superoxide dismutase 1531 53.33 0 1753106..1754275 - 389 117623839 ydhP APECO1_737 - putative transport protein 1532 53.41 0 1754829..1755854 + 341 117623840 purR APECO1_738 - DNA-binding transcriptional repressor PurR 1533 53.59 0 1755851..1756783 - 310 117623841 ydhB APECO1_739 - putative DNA-binding transcriptional regulator 1534 53.38 0 1756896..1758107 + 403 117623842 ydhC APECO1_740 - inner membrane transport protein YdhC 1535 48.22 0 1758398..1759546 + 382 117623843 cfa APECO1_741 - cyclopropane fatty acyl phospholipid synthase 1536 47.82 0 1759586..1760227 - 213 117623844 ribE APECO1_742 - riboflavin synthase subunit alpha 1537 53.35 0 1760442..1761815 + 457 117623845 mdtK APECO1_743 - multidrug efflux protein 1538 51.07 0 1761856..1763112 - 418 117623846 ydhQ APECO1_744 - hypothetical protein 1539 45.74 -1 1764117..1765067 + 316 117623848 ydhS APECO1_746 - hypothetical protein 1540 50.85 0 1765368..1765721 + 117 117623849 - APECO1_747 - hypothetical protein 1541 52.40 0 1765733..1766545 - 270 117623850 ydhT APECO1_748 - hypothetical protein 1542 49.87 0 1766549..1767334 - 261 117623851 ydhU APECO1_749 - putative cytochrome 1543 49.58 0 1767331..1768050 - 239 117623852 - APECO1_750 - putative oxidoreductase Fe-S subunit 1544 52.62 0 1768063..1768710 - 215 117623853 ydhW APECO1_751 - hypothetical protein 1545 47.74 0 1768714..1770900 - 728 117623854 ydhV APECO1_752 - putative oxidoreductase 1546 48.17 0 1770837..1771463 - 208 117623855 ydhY APECO1_753 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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