version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1419 38.43 -2 1628169..1629326 - 385 117623726 ydeM APECO1_625 - hypothetical protein 1420 44.15 -1 1629378..1631060 - 560 117623727 ydeN APECO1_626 - putative sulfatase 1421 39.37 -2 1631462..1632223 - 253 117623728 - APECO1_627 - transcriptional regulator YdeO 1422 49.74 0 1632743..1635022 - 759 117623729 ydeP APECO1_628 - putative oxidoreductase 1423 44.37 -1 1635361..1636275 - 304 117623730 fmlD APECO1_629 - putative Fml fimbrial adhesin FmlD precursor 1424 43.25 -1 1636335..1636838 - 167 117623731 ydeR APECO1_630 - fimbrial-like adhesin protein 1425 43.50 -1 1636851..1637381 - 176 117623732 ydeS APECO1_631 - fimbrial-like adhesin protein 1426 44.23 -1 1637395..1640046 - 883 117623733 - APECO1_632 - outer membrane usher protein FimD precursor 1427 45.28 -1 1640088..1640807 - 239 117623734 - APECO1_633 - chaperone protein fimC precursor 1428 46.63 0 1641160..1641723 - 187 117623735 fmlA APECO1_634 - putative Fml fimbriae subunit 1429 46.74 0 1642499..1643281 - 260 117623736 - APECO1_635 - hypothetical protein 1430 48.06 0 1643391..1643648 + 85 117623737 - APECO1_636 - hypothetical protein 1431 47.68 0 1643907..1645286 - 459 117623738 hipA APECO1_637 - regulator with HipB 1432 44.57 -1 1645229..1645495 - 88 117623739 hipB APECO1_638 - DNA-binding transcriptional regulator HipB 1433 54.55 0 1645803..1646561 + 252 117623740 tam APECO1_639 - trans-aconitate 2-methyltransferase 1434 47.83 0 1646565..1647530 - 321 117623741 - APECO1_640 - hypothetical protein 1435 51.93 0 1647676..1649127 - 483 117623742 uxaB APECO1_641 - altronate oxidoreductase 1436 48.77 0 1649354..1650772 - 472 117623743 yneF APECO1_642 - hypothetical protein 1437 51.39 0 1650911..1651270 - 119 117623744 yneG APECO1_643 - hypothetical protein 1438 51.67 0 1651270..1652196 - 308 117623745 yneH APECO1_644 - glutaminase 1439 52.51 0 1652260..1653672 - 470 117623746 yneI APECO1_645 - aldehyde-dehydrogenase like protein YneI 1440 53.97 0 1653749..1654630 + 293 117623747 yneJ APECO1_6452 - aldehyde-dehydrogenase like protein YneI 1441 50.71 0 1654969..1656159 + 396 117623748 sotB APECO1_646 - sugar efflux transporter 1442 50.45 0 1656184..1656849 - 221 117623749 marC APECO1_647 - multiple drug resistance protein MarC 1443 48.97 0 1657061..1657495 + 144 117623750 marR APECO1_648 - DNA-binding transcriptional repressor MarR 1444 45.38 -1 1657510..1657899 + 129 117623751 marA APECO1_649 - DNA-binding transcriptional activator MarA 1445 44.35 -1 1658206..1659675 - 489 117623752 celA APECO1_650 - 6-phospho-beta-glucosidase 1446 42.65 -1 1659669..1661342 - 557 117623753 yieC APECO1_651 - putative outer membrane protein YieC precursor 1447 43.81 -1 1661397..1661711 - 104 117623754 - APECO1_652 - PTS system, cellobiose-specific IIA component 1448 43.31 -1 1661736..1663058 - 440 117623755 - APECO1_653 - hypothetical protein 1449 41.67 -1 1663173..1663484 - 103 117623756 - APECO1_654 - PTS system, cellobiose-specific IIB component 1450 40.92 -2 1663683..1664381 + 232 117623757 - APECO1_655 - putative transcriptional regulator 1451 49.62 0 1664426..1665346 - 306 117623758 ydeD APECO1_656 - O-acetylserine/cysteine export protein 1452 49.75 0 1665520..1666707 + 395 117623759 ydeE APECO1_657 - putative MFS-type transporter YdeE 1453 44.48 -1 1667148..1668044 - 298 117623760 ydeH APECO1_658 - hypothetical protein 1454 50.24 0 1668546..1670591 - 681 117623761 dcp APECO1_659 - dipeptidyl carboxypeptidase II 1455 51.14 0 1670728..1671474 + 248 117623762 ydfG APECO1_6592 - 3-hydroxy acid dehydrogenase 1456 50.22 0 1671563..1672249 + 228 117623763 - APECO1_660 - hypothetical protein 1457 49.56 0 1672665..1674125 - 486 117623765 - APECO1_662 - putative oxidoreductase 1458 45.59 -1 1674626..1675669 - 347 117623766 rspB APECO1_663 - putative dehydrogenase 1459 51.04 0 1675657..1676904 - 415 117623767 rspA APECO1_664 - starvation sensing protein RspA 1460 51.79 0 1677077..1677412 - 111 117623768 ynfA APECO1_665 - hypothetical protein 1461 50.58 0 1677538..1677879 + 113 117623769 ynfB APECO1_666 - hypothetical protein 1462 46.88 0 1677914..1678474 + 186 117623770 - APECO1_667 - spermidine N1-acetyltransferase 1463 43.51 -1 1678477..1679223 - 248 117623771 ynfC APECO1_668 - hypothetical protein 1464 53.16 0 1679253..1679600 + 115 117623772 ynfD APECO1_669 - hypothetical protein 1465 50.35 0 1679799..1682225 + 808 117623773 ynfE APECO1_670 - putative dimethyl sulfoxide reductase chain YnfE precursor 1466 50.68 0 1682283..1684709 + 808 117623774 ynfF APECO1_671 - putative dimethyl sulfoxide reductase chain YnfF precursor 1467 52.10 0 1684720..1685337 + 205 117623775 dmsB APECO1_672 - dimethyl sulfoxide reductase, anaerobic, subunit B 1468 52.15 0 1685099..1686193 + 364 117623776 ynfH APECO1_673 - oxidoreductase, membrane subunit 1469 53.21 0 1686227..1686850 + 207 117623777 ynfI APECO1_674 - twin-argninine leader-binding protein DmsD 1470 53.86 0 1686988..1688229 + 413 117623778 ynfJ APECO1_675 - putative voltage-gated ClC-type chloride channel ClcB 1471 52.12 0 1688182..1688889 - 235 117623779 ynfK APECO1_676 - putative dithiobiotin synthetase 1472 51.92 0 1689002..1690222 - 406 117623780 mlc APECO1_677 - Mlc protein 1473 52.13 0 1690357..1691250 - 297 117623781 ynfL APECO1_678 - putative transcriptional regulator 1474 52.63 0 1691357..1692610 + 417 117623782 ynfM APECO1_679 - putative transporter 1475 49.40 0 1693008..1693343 + 111 117623783 asr APECO1_680 - acid shock protein precursor 1476 52.55 0 1693619..1694440 + 273 117623784 ydgD APECO1_681 - putative protease 1477 51.52 0 1694479..1694808 - 109 117623785 - APECO1_682 - multidrug efflux system protein MdtI 1478 43.17 -1 1694795..1695160 - 121 117623786 ydgF APECO1_683 - multidrug efflux system protein MdtJ 1479 49.86 0 1695571..1696605 + 344 117623787 tqsA APECO1_684 - putative transport protein 1480 52.34 0 1696630..1698018 - 462 117623788 pntB APECO1_685 - pyridine nucleotide transhydrogenase 1481 52.36 0 1698029..1699615 - 528 117623789 pntA APECO1_686 - NAD(P) transhydrogenase subunit alpha 1482 51.01 0 1700085..1701029 + 314 117623790 ydgH APECO1_687 - hypothetical protein 1483 53.65 0 1701215..1702597 + 460 117623791 ydgI APECO1_688 - putative arginine/ornithine antiporter 1484 50.90 0 1702634..1703356 + 240 117623792 ydgB APECO1_689 - short chain dehydrogenase 1485 47.62 0 1703353..1703688 - 111 117623793 ydgC APECO1_690 - hypothetical protein 1486 49.07 0 1703781..1704536 + 251 117623794 rstA APECO1_691 - DNA-binding transcriptional regulator RstA 1487 51.23 0 1704540..1705841 + 433 117623795 rstB APECO1_692 - sensor protein RstB 1488 49.68 0 1705905..1706846 + 313 117623796 tus APECO1_693 - DNA replication terminus site-binding protein 1489 54.27 0 1706843..1708246 - 467 117623797 fumC APECO1_694 - fumarate hydratase 1490 50.94 0 1708389..1710035 - 548 117623798 fumA APECO1_695 - fumarate hydratase, aerobic class I 1491 50.85 0 1710234..1711409 + 391 117623799 manA APECO1_696 - mannose-6-phosphate isomerase 1492 49.57 0 1711510..1713018 + 502 117623800 - APECO1_697 - hypothetical protein 1493 46.92 0 1713063..1714328 - 421 117623801 uidC APECO1_698 - putative outer membrane porin protein 1494 51.82 0 1714367..1715740 - 457 117623802 uidB APECO1_699 - glucuronide transporter 1495 52.04 0 1715737..1717548 - 603 117623803 uidA APECO1_700 - beta-D-glucuronidase 1496 50.59 0 1717938..1718528 - 196 117623804 uidR APECO1_701 - repressor for uid operon 1497 47.14 0 1718757..1719524 - 255 117623805 hdhA APECO1_702 - 7-alpha-hydroxysteroid dehydrogenase 1498 54.42 0 1719636..1720664 - 342 117623806 malI APECO1_703 - DNA-binding transcriptional repressor MalI 1499 52.29 0 1720839..1722431 + 530 117623807 malX APECO1_704 - bifunctional maltose and glucose-specific PTS system components IICB 1500 51.32 0 1722441..1723613 + 390 117623808 malY APECO1_705 - bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon 1501 53.69 0 1723717..1724718 + 333 117623809 add APECO1_706 - adenosine deaminase 1502 53.52 0 1724754..1725833 - 359 117623810 ydgJ APECO1_707 - putative oxidoreductase 1503 34.09 -2 1726251..1726514 + 87 117623811 - APECO1_708 - hypothetical protein 1504 48.98 0 1726736..1727176 + 146 117623812 ydgK APECO1_709 - hypothetical protein 1505 50.86 0 1727253..1727834 + 193 117623813 rnfA APECO1_710 - Na(+)-translocating NADH-quinone reductase subunit E 1506 55.09 0 1727834..1728412 + 192 117623814 rnfB APECO1_711 - electron transport complex protein RnfB 1507 54.72 0 1728405..1730531 + 708 117623815 rnfC APECO1_712 - electron transport complex protein RnfC 1508 52.88 0 1730532..1731590 + 352 117623816 rnfD APECO1_713 - electron transport complex protein RnfD 1509 52.82 0 1731594..1732214 + 206 117623817 rnfG APECO1_714 - electron transport complex protein RnfG 1510 53.02 0 1732218..1732913 + 231 117623818 rnfE APECO1_715 - SoxR-reducing system protein RsxE 1511 48.27 0 1732913..1733548 + 211 117623819 nth APECO1_716 - endonuclease III 1512 51.16 0 1734159..1735661 + 500 117623820 tppB APECO1_717 - putative tripeptide transporter permease 1513 50.00 0 1735766..1736371 + 201 117623821 gst APECO1_718 - glutathionine S-transferase 1514 51.97 0 1736415..1737278 - 287 117623822 pdxY APECO1_719 - pyridoxamine kinase 1515 51.90 0 1737337..1738623 - 428 117623823 tyrS APECO1_720 - tyrosyl-tRNA synthetase 1516 51.45 0 1738740..1739396 - 218 117623824 pdxH APECO1_721 - pyridoxamine 5'-phosphate oxidase 1517 46.06 -1 1739455..1739784 - 109 117623825 ydhA APECO1_722 - lysozyme inhibitor 1518 55.50 0 1739882..1740991 - 369 117623826 anmK APECO1_723 - anhydro-N-acetylmuramic acid kinase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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