version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 94 52.12 0 116826..118028 - 400 117622389 hofC APECO1_1883 - type IV pilin biogenesis protein 95 53.39 0 118018..119403 - 461 117622390 hofB APECO1_1882 - hypothetical protein 96 52.61 0 119413..119853 - 146 117622391 pppD APECO1_1881 - putative major pilin subunit 97 52.35 0 120057..120992 - 311 117622392 nadC APECO1_1880 - quinolinate phosphoribosyltransferase 98 54.53 0 121038..121589 + 183 117622393 ampD APECO1_1879 - N-acetyl-anhydromuranmyl-L-alanine amidase 99 51.46 0 121586..122440 + 284 117622394 ampE APECO1_1878 - regulatory protein AmpE 100 52.59 0 122483..123853 - 456 117622395 aroP APECO1_1877 - aromatic amino acid transporter 101 48.77 0 124381..126162 + 593 117622396 usp APECO1_1876 - uropathogenic specific protein 102 36.49 -2 126165..126449 + 94 117622397 - APECO1_1875 - hypothetical protein 103 38.83 -2 126857..127147 + 96 117622398 - APECO1_1874 - hypothetical protein 104 32.32 -2 127550..127846 + 98 117622399 - APECO1_1873 - hypothetical protein 105 55.56 0 128302..129066 + 254 117622400 pdhR APECO1_1872 - transcriptional regulator PdhR 106 53.08 0 129227..131890 + 887 117622401 aceE APECO1_1871 - pyruvate dehydrogenase subunit E1 107 54.62 0 131905..133797 + 630 117622402 aceF APECO1_1870 - dihydrolipoamide acetyltransferase 108 52.38 0 134001..135428 + 475 117622403 lpd APECO1_1869 - dihydrolipoamide dehydrogenase 109 53.98 0 135670..137427 - 585 117622404 yacH APECO1_1868 - hypothetical protein 110 55.29 0 137629..140379 + 916 117622405 acnB APECO1_1867 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 111 52.49 0 140506..140766 + 86 117622406 yacL APECO1_1866 - hypothetical protein 112 47.28 0 140950..141501 - 183 117622407 speD APECO1_1865 - S-adenosylmethionine decarboxylase 113 50.29 0 141760..142626 - 288 117622408 speE APECO1_1864 - spermidine synthase 114 49.10 0 142732..143118 - 128 117622409 yacC APECO1_1863 - hypothetical protein 115 53.97 0 143245..144795 + 516 117622410 cueO APECO1_1862 - multicopper oxidase 116 55.63 0 144842..147232 - 796 117622411 gcd APECO1_1861 - glucose dehydrogenase 117 49.13 0 147399..147974 + 191 117622412 hpt APECO1_1860 - hypoxanthine-guanine phosphoribosyltransferase 118 50.38 0 148015..148677 - 220 117622413 yadF APECO1_1859 - carbonic anhydrase 119 48.44 0 148786..149712 + 308 117622414 yadG APECO1_1858 - putative ABC transporter ATP-binding protein YadG 120 50.84 0 149709..150479 + 256 117622415 - APECO1_1857 - hypothetical protein 121 48.98 0 150584..151024 + 146 117622416 yadI APECO1_1856 - putative PTS system IIA component YadI 122 48.37 0 151088..152317 + 409 117622417 yadE APECO1_1855 - hypothetical protein 123 53.28 0 152321..152701 - 126 117622418 - APECO1_1854 - aspartate alpha-decarboxylase 124 48.70 0 152975..153859 + 294 117622419 - APECO1_1853 - hypothetical protein 125 52.23 0 153941..154792 - 283 117622420 panC APECO1_1852 - pantoate--beta-alanine ligase 126 54.84 0 154804..155598 - 264 117622421 panB APECO1_1851 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 127 41.23 -2 155710..156975 - 421 117622422 yadC APECO1_1850 - putative fimbrial-like adhesin protein 128 43.38 -1 157025..157621 - 198 117622423 yadK APECO1_1849 - hypothetical protein 129 42.76 -1 157648..158262 - 204 117622424 yadL APECO1_1848 - hypothetical protein 130 41.45 -2 158268..158834 - 188 117622425 yadM APECO1_1847 - putative fimbrial-like adhesin protein 131 44.77 -1 158851..161439 - 862 117622426 htrE APECO1_1846 - putative outer membrane usher protein 132 44.26 -1 161474..162214 - 246 117622427 ecpD APECO1_1845 - putative chaperone protein EcpD 133 42.60 -1 162323..162937 - 204 117622428 yadN APECO1_1844 - putative fimbrial-like adhesin protein 134 49.58 0 163275..163754 - 159 117622429 folK APECO1_1843 - 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 135 56.26 +1 163751..165115 - 454 117622430 pcnB APECO1_1842 - poly(A) polymerase I 136 54.18 0 165208..166104 - 298 162317587 yadB APECO1_1841 - glutamyl-Q tRNA(Asp) synthetase 137 52.32 0 166171..166644 - 157 117622432 dksA APECO1_1840 - DnaK transcriptional regulator DksA 138 49.79 0 166804..167508 - 234 117622433 - APECO1_1839 - sugar fermentation stimulation protein A 139 56.45 +1 167523..168266 - 247 117622434 yadP APECO1_1838 - 2'-5' RNA ligase 140 56.61 +1 168082..170556 + 824 117622435 hrpB APECO1_1837 - ATP-dependent RNA helicase HrpB 141 54.83 0 170650..173184 + 844 117622436 mrcB APECO1_1836 - penicillin-binding protein 1b 142 51.43 0 173404..175647 + 747 117622437 fhuA APECO1_1835 - ferrichrome outer membrane transporter 143 56.27 +1 175698..176495 + 265 117622438 fhuC APECO1_1834 - iron-hydroxamate transporter ATP-binding subunit 144 54.32 0 176495..177385 + 296 117622439 fhuD APECO1_1833 - iron-hydroxamate transporter substrate-binding subunit 145 59.71 +1 177382..179364 + 660 117622440 fhuB APECO1_1832 - iron-hydroxamate transporter permease subunit 146 55.66 +1 179399..180679 - 426 117622441 hemL APECO1_1831 - glutamate-1-semialdehyde aminotransferase 147 53.59 0 180904..182325 + 473 117622442 yadQ APECO1_1830 - chloride channel protein 148 50.72 0 182407..182751 + 114 117622443 yadR APECO1_1829 - iron-sulfur cluster insertion protein ErpA 149 52.88 0 182798..183421 - 207 117622444 yadS APECO1_1828 - hypothetical protein 150 53.18 0 183459..184259 - 266 117622445 yadT APECO1_1827 - vitamin B12-transporter protein BtuF 151 52.93 0 184252..184950 - 232 117622446 - APECO1_1826 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 152 47.89 0 185034..186551 + 505 117622447 dgt APECO1_1825 - deoxyguanosinetriphosphate triphosphohydrolase 153 53.75 0 186681..188105 + 474 117622448 htrA APECO1_1824 - serine endoprotease 154 53.14 0 188283..189413 + 376 117622449 cdaR APECO1_1823 - carbohydrate diacid transcriptional activator CdaR 155 44.70 -1 189467..189853 - 128 117622450 - APECO1_1822 - hypothetical protein 156 52.73 0 190165..190989 - 274 117622451 dapD APECO1_1821 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 157 53.61 0 191020..193692 - 890 117622452 glnD APECO1_1820 - PII uridylyl-transferase 158 50.82 0 193754..194548 - 264 117622453 map APECO1_1819 - methionine aminopeptidase 159 51.38 0 194916..195641 + 241 117622454 rpsB APECO1_1818 - 30S ribosomal protein S2 160 49.68 0 195593..196522 - 309 117622455 - APECO1_1817 - hypothetical protein 161 52.75 0 196774..197499 + 241 117622456 pyrH APECO1_1816 - uridylate kinase 162 51.15 0 197685..198206 + 173 117622457 frr APECO1_1815 - ribosome recycling factor 163 52.63 0 198298..199494 + 398 117622458 dxr APECO1_1814 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 164 49.61 0 199680..200441 + 253 117622459 - APECO1_1813 - undecaprenyl pyrophosphate synthase 165 50.48 0 200484..201311 + 275 117622460 cdsA APECO1_1812 - CDP-diglyceride synthase 166 50.78 0 201323..202675 + 450 117622461 yaeL APECO1_1811 - zinc metallopeptidase 167 50.18 0 202705..205137 + 810 117622462 - APECO1_1810 - outer membrane protein assembly factor YaeT 168 50.00 0 205259..205744 + 161 117622463 - APECO1_1809 - periplasmic chaperone 169 52.14 0 205748..206773 + 341 117622464 lpxD APECO1_1808 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 170 52.23 0 206953..207333 + 126 117622465 fabZ APECO1_1807 - (3R)-hydroxymyristol acyl carrier protein dehydratase 171 53.36 0 207337..208125 + 262 117622466 lpxA APECO1_1806 - UDP-N-acetylglucosamine acyltransferase 172 53.79 0 208125..209273 + 382 117622467 lpxB APECO1_1805 - lipid-A-disaccharide synthase 173 55.95 +1 209270..209866 + 198 117622468 rnhB APECO1_1804 - ribonuclease HII 174 54.41 0 209903..213385 + 1160 117622469 dnaE APECO1_1803 - DNA polymerase III subunit alpha 175 52.71 0 213398..214357 + 319 117622470 accA APECO1_1802 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 176 51.35 0 214455..216596 + 713 117622471 ldcC APECO1_1801 - lysine decarboxylase, constitutive 177 50.84 0 216626..217042 + 138 117622472 yaeR APECO1_1800 - hypothetical protein 178 57.20 +1 217107..218405 + 432 117622473 tilS APECO1_1799 - tRNA(Ile)-lysidine synthetase 179 47.89 0 218453..218713 - 86 117622474 rof APECO1_1798 - Rho-binding antiterminator 180 52.20 0 219066..219611 + 181 117622475 yaeQ APECO1_1797 - hypothetical protein 181 55.08 0 219608..220030 + 140 117622476 yaeJ APECO1_1796 - hypothetical protein 182 52.04 0 220044..220754 + 236 117622477 cutF APECO1_1795 - lipoprotein involved with copper homeostasis and adhesion 183 47.52 0 220910..221734 - 274 117622478 yaeF APECO1_1794 - hypothetical protein 184 53.98 0 221787..223505 - 572 117622479 proS APECO1_1793 - prolyl-tRNA synthetase 185 54.24 0 223616..224323 - 235 117622480 yaeB APECO1_1792 - hypothetical protein 186 53.58 0 224320..224724 - 134 117622481 rcsF APECO1_1791 - outer membrane lipoprotein 187 49.02 0 224842..225657 - 271 117622482 metQ APECO1_1790 - DL-methionine transporter substrate-binding subunit 188 51.53 0 225697..226350 - 217 117622483 metI APECO1_1789 - DL-methionine transporter permease subunit 189 52.42 0 226343..227374 - 343 117622484 metN APECO1_1788 - DL-methionine transporter ATP-binding subunit 190 50.26 0 227562..228134 + 190 117622485 yaeD APECO1_1787 - D,D-heptose 1,7-bisphosphate phosphatase 191 46.27 0 233893..234696 + 267 117622489 dkgB APECO1_1783 - 2,5-diketo-D-gluconate reductase B 192 49.07 0 234693..235607 - 304 117622490 - APECO1_1782 - putative transcriptional regulator LYSR-type 193 51.76 0 235824..236648 + 274 117622491 yafD APECO1_1781 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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