version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1247 51.80 0 1417902..1418708 - 268 117623553 sapF APECO1_453 - putative ATP-binding protein of peptide transport system 1248 51.16 0 1418710..1419702 - 330 117623554 sapD APECO1_454 - putative ATP-binding protein of peptide transport system 1249 57.01 +1 1419702..1420592 - 296 117623555 sapC APECO1_455 - peptide ABC transporter permease 1250 50.83 0 1420579..1421544 - 321 117623556 sapB APECO1_456 - peptide transport system permease protein SapB 1251 53.53 0 1421541..1423184 - 547 117623557 sapA APECO1_457 - peptide transport periplasmic protein SapA precursor 1252 51.86 0 1424169..1425161 - 330 117623558 pspF APECO1_458 - phage shock protein operon transcriptional activator 1253 49.18 0 1425312..1425980 + 222 117623559 pspA APECO1_459 - phage shock protein PspA 1254 50.56 0 1426258..1426617 + 119 117623560 pspC APECO1_460 - DNA-binding transcriptional activator PspC 1255 49.84 0 1426922..1427236 + 104 117623561 pspE APECO1_461 - thiosulfate:cyanide sulfurtransferase (rhodanese) 1256 44.00 -1 1427419..1429125 + 568 117623562 ycjM APECO1_462 - putative sucrose phosphorylase 1257 51.35 0 1429139..1430431 + 430 117623563 ycjN APECO1_463 - putative ABC transporter periplasmic binding protein YcjN precursor 1258 53.63 0 1430452..1431333 + 293 117623564 ycjO APECO1_464 - putative binding-protein dependent transport protein 1259 52.43 0 1431320..1432162 + 280 117623565 ycjP APECO1_465 - ABC transporter permease 1260 57.12 +1 1432193..1432915 + 240 117623566 ycjQ APECO1_466 - zinc-type alcohol dehydrogenase-like protein YcjQ 1261 51.63 0 1433255..1434052 + 265 117623567 ycjR APECO1_467 - putative transient receptor potential locus 1262 54.92 0 1434062..1435117 + 351 117623568 ycjS APECO1_468 - oxidoreductase YcjS 1263 53.75 0 1435114..1437381 + 755 117623569 ycjT APECO1_469 - transport protein YcjT 1264 55.45 0 1437378..1438037 + 219 117623570 ycjU APECO1_470 - putative beta-phosphoglucomutase 1265 49.86 0 1438051..1439133 + 360 117623571 ycjV APECO1_471 - ABC transporter ATP-binding protein 1266 48.90 0 1439178..1440083 + 301 117623572 ompG APECO1_472 - outer membrane protein G precursor 1267 45.05 -1 1440134..1441132 - 332 117623573 ycjW APECO1_473 - transcriptional regulator YcjW 1268 54.01 0 1441216..1442685 + 489 117623574 ycjX APECO1_474 - hypothetical protein 1269 56.59 +1 1442682..1443743 + 353 117623575 ycjF APECO1_475 - hypothetical protein 1270 52.08 0 1443891..1445432 + 513 117623576 tyrR APECO1_476 - DNA-binding transcriptional regulator TyrR 1271 51.48 0 1445476..1445982 - 168 117623577 tpx APECO1_477 - thiol peroxidase 1272 54.14 0 1446101..1447066 + 321 117623578 ycjG APECO1_478 - hypothetical protein 1273 53.91 0 1447041..1447769 - 242 117623579 ycjI APECO1_479 - murein peptide amidase A 1274 43.04 -1 1448060..1448698 - 212 117623580 - APECO1_480 - hypothetical protein 1275 48.45 0 1448769..1449701 - 310 117623581 ycjY APECO1_481 - hypothetical protein 1276 47.00 0 1449827..1450726 + 299 117623582 ycjZ APECO1_482 - transcriptional regulator YcjZ 1277 48.26 0 1451042..1452676 + 544 117623583 mppA APECO1_483 - periplasmic murein peptide-binding protein precursor 1278 43.31 -1 1452727..1453758 - 343 117623584 ynaI APECO1_484 - hypothetical protein 1279 45.35 -1 1454002..1454259 + 85 117623585 ynaJ APECO1_485 - putative inner membrane protein 1280 50.68 0 1454309..1455259 - 316 117623586 - APECO1_486 - universal stress protein UspE 1281 49.69 0 1455411..1456205 - 264 117623587 fnr APECO1_487 - fumarate/nitrate reduction transcriptional regulator 1282 53.29 0 1456358..1456873 - 171 117623588 ogt APECO1_488 - O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1283 45.71 -1 1457404..1458219 - 271 117623589 - APECO1_489 - hypothetical protein 1284 46.32 0 1458313..1459344 + 343 117623590 hlyD APECO1_490 - putative secretion protein 1285 41.78 -1 1459341..1460855 + 504 117623591 - APECO1_491 - putative transporter 1286 53.55 0 1461050..1461613 + 187 117623592 ydaL APECO1_492 - hypothetical protein 1287 46.95 0 1461634..1462926 - 430 117623593 ydaM APECO1_493 - hypothetical protein 1288 51.32 0 1463121..1464104 + 327 117623594 zntB APECO1_494 - zinc transporter 1289 52.11 0 1464582..1465955 + 457 117623595 dbpA APECO1_495 - ATP-dependent RNA helicase DbpA 1290 49.15 0 1466084..1467019 - 311 117623596 ydaO APECO1_496 - C32 tRNA thiolase 1291 43.53 -1 1467071..1468306 - 411 117623597 intR APECO1_497 - Rac prophage; integrase 1292 37.55 -2 1468623..1468883 - 86 117623598 ydaC APECO1_498 - hypothetical protein 1293 47.17 0 1469055..1469921 - 288 117623599 recT APECO1_499 - recombination and repair protein RecT 1294 49.52 0 1469857..1472457 - 866 117623600 recE APECO1_500 - exonuclease VIII 1295 39.20 -2 1472559..1472882 - 107 117623601 racC APECO1_501 - hypothetical protein 1296 39.54 -2 1473608..1474219 + 203 117623602 sieB APECO1_502 - prophage CP-933R superinfection exclusion protein 1297 44.76 -1 1474820..1475239 - 139 117623603 - APECO1_503 - putative regulator 1298 53.19 0 1475575..1475997 + 140 117623604 ydaT APECO1_504 - Rac prophage hypothetical protein 1299 48.66 0 1476010..1476870 + 286 117623605 - APECO1_505 - hypothetical protein 1300 53.95 0 1476877..1477623 + 248 117623606 ydaV APECO1_506 - putative replication protein 1301 50.80 0 1477595..1478407 + 270 117623607 - APECO1_507 - putative transcription regulatory protein 1302 47.48 0 1478423..1478839 + 138 117623608 - APECO1_508 - hypothetical protein 1303 47.74 0 1479003..1479689 + 228 117623609 - APECO1_509 - hypothetical protein 1304 40.74 -2 1480490..1480975 + 161 117623610 - APECO1_510 - putative bacteriophage protein 1305 49.67 0 1481483..1482082 + 199 117623611 - APECO1_511 - hypothetical protein 1306 47.03 0 1482249..1482905 + 218 117623612 - APECO1_512 - putative antitermination protein 1307 50.50 0 1484111..1484413 + 100 117623613 - APECO1_513 - phage lysis protein 1308 47.39 0 1484413..1484910 + 165 117623614 - APECO1_514 - phage-related lysozyme (muraminidase) 1309 50.31 0 1484895..1485371 + 158 117623615 - APECO1_515 - hypothetical protein 1310 37.86 -2 1485509..1486966 + 485 117623616 trkG APECO1_516 - Rac prophage; potassium transporter subunit 1311 50.38 0 1487104..1487895 + 263 117623617 - APECO1_517 - putative transcriptional regulator 1312 48.22 0 1487867..1488820 + 317 117623618 - APECO1_518 - hypothetical protein 1313 48.81 0 1488756..1489007 + 83 117623619 - APECO1_519 - hypothetical protein 1314 52.31 0 1489347..1490105 + 252 117623620 - APECO1_520 - hypothetical protein 1315 45.77 -1 1490077..1491387 + 436 117623621 - APECO1_521 - putative phage terminase 1316 47.69 0 1491390..1492796 + 468 117623622 - APECO1_522 - hypothetical protein 1317 49.55 0 1492777..1493892 + 371 117623623 - APECO1_523 - hypothetical protein 1318 46.24 0 1493925..1494761 + 278 117623624 - APECO1_524 - hypothetical protein 1319 49.46 0 1494791..1495999 + 402 117623625 - APECO1_525 - hypothetical protein 1320 47.47 0 1496270..1496665 + 131 117623626 - APECO1_526 - hypothetical protein 1321 47.03 0 1496662..1497048 + 128 117623627 - APECO1_527 - hypothetical protein 1322 44.36 -1 1497049..1497429 + 126 117623628 - APECO1_528 - hypothetical protein 1323 46.06 -1 1497426..1497818 + 130 117623629 - APECO1_529 - hypothetical protein 1324 49.74 0 1497845..1498807 + 320 117623630 - APECO1_530 - hypothetical protein 1325 45.89 -1 1498856..1499317 + 153 117623631 ydaY APECO1_531 - Rac prophage hypothetical protein 1326 44.93 -1 1499789..1503022 + 1077 117623632 ynaA APECO1_532 - Rac prophage; tail protein 1327 42.18 -1 1503015..1503353 + 112 117623633 - APECO1_533 - putative minor tail protein 1328 55.36 0 1503353..1504051 + 232 117623634 - APECO1_5332 - putative minor tail protein 1329 59.95 +1 1504056..1504799 + 247 117623635 - APECO1_534 - putative tail fiber component K of prophage 1330 58.95 +1 1504697..1505344 + 215 117623636 - APECO1_535 - putative tail component of prophage 1331 56.22 +1 1505405..1508803 + 1132 117623637 - APECO1_536 - putative tail component of prophage 1332 54.17 0 1508871..1509470 + 199 117623638 - APECO1_537 - putative outer membrane protein of prophage 1333 48.91 0 1509529..1511910 + 793 117623639 - APECO1_538 - putative tail fiber protein 1334 41.49 -2 1511910..1512191 + 93 117623640 - APECO1_539 - hypothetical protein 1335 44.40 -1 1512201..1512905 + 234 117623641 - APECO1_540 - hypothetical protein 1336 52.58 0 1512916..1513206 + 96 117623642 - APECO1_541 - hypothetical protein 1337 43.56 -1 1513719..1514432 + 237 117623643 cdtA APECO1_542 - cytolethal distending toxin type IV subunit A 1338 41.85 -1 1514429..1515250 + 273 117623644 cdtB APECO1_543 - cytolethal distending toxin type IV subunit B 1339 40.49 -2 1515247..1515819 + 190 117623645 cdtC APECO1_544 - cytolethal distending toxin type IV subunit C 1340 42.49 -1 1515889..1517373 - 494 117623646 - APECO1_545 - hypothetical protein 1341 42.80 -1 1517558..1518508 - 316 162317578 - APECO1_546 - outer membrane protease 1342 45.30 -1 1518815..1519165 - 116 117623648 - APECO1_547 - hypothetical protein 1343 50.81 0 1519398..1519706 - 102 117623649 - APECO1_548 - putative integrase 1344 47.53 0 1521673..1522179 - 168 117623650 - APECO1_549 - putative filament protein 1345 46.56 0 1522248..1523381 - 377 117623651 ompN APECO1_550 - outer membrane pore protein N, non-specific 1346 53.42 0 1523747..1527271 - 1174 117623652 ydbK APECO1_551 - pyruvate-flavodoxin oxidoreductase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0