version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1185 46.89 0 1344791..1345063 - 90 117623491 - APECO1_391 - hypothetical protein 1186 53.74 0 1345263..1345703 + 146 117623492 - APECO1_392 - putative phage lysozyme 1187 46.88 0 1345646..1345933 - 95 117623493 - APECO1_393 - hypothetical protein 1188 52.69 0 1346002..1346466 + 154 117623494 - APECO1_394 - bacteriophage lambda cell lysis protein 1189 31.46 -2 1346774..1347199 - 141 117623495 ydfO APECO1_395 - hypothetical protein 1190 46.89 0 1347623..1348411 + 262 117623496 nohA2 APECO1_396 - prophage Qin DNA packaging protein NU1-like protein 1191 51.90 0 1348341..1350311 + 656 117623497 - APECO1_397 - putative DNA packaging protein of prophage; terminase large subunit 1192 56.18 +1 1350498..1352090 + 530 117623498 - APECO1_398 - putative capsid protein of prophage 1193 60.62 +2 1352080..1353585 + 501 117623499 - APECO1_399 - putative capsid assembly protein of prophage 1194 54.84 0 1353601..1353972 - 123 117623500 - APECO1_400 - hypothetical protein 1195 53.45 0 1354027..1355055 + 342 117623501 - APECO1_401 - putative capsid protein of prophage 1196 55.32 0 1355059..1355490 + 143 117623502 - APECO1_402 - hypothetical protein 1197 57.06 +1 1355483..1355836 + 117 117623503 - APECO1_403 - putative head-tail joining protein of prophage 1198 51.87 0 1355852..1356385 + 177 117623504 - APECO1_404 - putative minor tail protein 1199 52.53 0 1356382..1356777 + 131 117623505 - APECO1_405 - putative tail component of prophage 1200 54.08 0 1356878..1358212 - 444 117623506 - APECO1_406 - hypothetical protein 1201 58.59 +1 1358403..1360976 + 857 117623507 - APECO1_407 - putative tail component of prophage CP-933O 1202 57.58 +1 1360973..1361302 + 109 117623508 - APECO1_408 - minor tail protein 1203 55.94 +1 1361302..1362000 + 232 117623509 - APECO1_409 - minor tail protein 1204 59.68 +1 1362005..1362748 + 247 117623510 - APECO1_410 - putative tail fiber component K of prophage 1205 57.17 +1 1362646..1363287 + 213 117623511 - APECO1_411 - putative tail component of prophage CP-933K 1206 36.28 -2 1363361..1363699 + 112 117623512 - APECO1_412 - hypothetical protein 1207 56.87 +1 1363766..1367245 + 1159 117623513 - APECO1_413 - putative tail component of prophage 1208 54.67 0 1367313..1367912 + 199 117623514 - APECO1_414 - hypothetical protein 1209 54.18 0 1368064..1371171 + 1035 117623515 - APECO1_415 - putative tail fiber protein 1210 47.86 0 1371171..1371755 + 194 117623516 ynaC APECO1_416 - phage-related tail fiber assembly protein G 1211 41.11 -2 1371810..1372478 - 222 117623517 - APECO1_417 - hypothetical protein 1212 48.15 0 1372624..1372974 - 116 117623518 - APECO1_418 - hypothetical protein 1213 40.24 -2 1373577..1374083 - 168 117623519 - APECO1_419 - hypothetical protein 1214 42.15 -1 1374129..1374650 - 173 117623520 yciF APECO1_420 - putative structural proteins 1215 54.89 0 1375275..1376081 - 268 117623521 trpA APECO1_421 - tryptophan synthase subunit alpha 1216 54.44 0 1376081..1377274 - 397 117623522 trpB APECO1_422 - tryptophan synthase subunit beta 1217 52.32 0 1377286..1378644 - 452 117623523 trpC APECO1_423 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1218 56.33 +1 1378648..1380243 - 531 117623524 trpD APECO1_424 - bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase 1219 54.25 0 1380243..1381805 - 520 117623525 trpE APECO1_425 - anthranilate synthase component I 1220 54.12 0 1382100..1382960 + 286 117623526 trpH APECO1_426 - hypothetical protein 1221 49.62 0 1382921..1383577 + 218 117623527 - APECO1_427 - hypothetical protein 1222 47.18 0 1383602..1385500 + 632 117623528 yciQ APECO1_428 - hypothetical protein 1223 53.31 0 1385713..1386588 + 291 117623529 rluB APECO1_429 - 23S rRNA pseudouridylate synthase B 1224 50.42 0 1386628..1387218 - 196 117623530 btuR APECO1_430 - cob(I)yrinic acid a,c-diamide adenosyltransferase 1225 52.31 0 1387215..1387973 - 252 117623531 yciK APECO1_431 - short chain dehydrogenase 1226 50.48 0 1388193..1389242 + 349 117623532 sohB APECO1_432 - putative periplasmic protease 1227 47.22 0 1389278..1389529 - 83 117623533 - APECO1_433 - hypothetical protein 1228 51.70 0 1389867..1392506 + 879 117623534 topA APECO1_434 - DNA topoisomerase I 1229 48.72 0 1392716..1393690 + 324 117623535 cysB APECO1_435 - transcriptional regulator CysB 1230 52.69 0 1394678..1397353 + 891 117623536 acnA APECO1_436 - aconitate hydratase 1231 48.93 0 1397417..1398070 - 217 117623537 ribA APECO1_437 - GTP cyclohydrolase II 1232 50.33 0 1398177..1398941 + 254 117623538 pgpB APECO1_438 - phosphatidylglycerophosphatase B 1233 50.16 0 1399090..1399398 + 102 117623539 yciS APECO1_439 - hypothetical protein 1234 51.37 0 1399405..1400574 + 389 117623540 yciM APECO1_440 - hypothetical protein 1235 53.56 0 1400706..1401491 + 261 117623541 pyrF APECO1_441 - orotidine 5'-phosphate decarboxylase 1236 50.61 0 1401500..1401829 + 109 117623542 yciH APECO1_442 - translation initiation factor Sui1 1237 48.67 0 1402442..1403191 - 249 117623543 - APECO1_443 - putative DEOR-type transcriptional regulator 1238 48.39 0 1403602..1405587 - 661 117623544 yciR APECO1_444 - RNase II stability modulator 1239 53.13 0 1405822..1407756 - 644 117623545 rnb APECO1_445 - exoribonuclease II 1240 51.24 0 1407824..1408951 - 375 117623546 yciW APECO1_446 - hypothetical protein 1241 53.61 0 1409096..1409884 - 262 117623547 fabI APECO1_447 - enoyl-(acyl carrier protein) reductase 1242 48.13 0 1410341..1410928 + 195 117623548 - APECO1_448 - putative transcription regulatory protein 1243 50.91 0 1411044..1412198 + 384 117623549 - APECO1_449 - acriflavine resistance protein A precursor 1244 52.12 0 1412198..1415305 + 1035 117623550 - APECO1_450 - acriflavine resistance protein B 1245 53.78 0 1415309..1416682 + 457 117623551 - APECO1_451 - putative outer membrane channel protein 1246 49.31 0 1416691..1417854 + 387 117623552 - APECO1_452 - putative membrane transport protein 1247 51.80 0 1417902..1418708 - 268 117623553 sapF APECO1_453 - putative ATP-binding protein of peptide transport system 1248 51.16 0 1418710..1419702 - 330 117623554 sapD APECO1_454 - putative ATP-binding protein of peptide transport system 1249 57.01 +1 1419702..1420592 - 296 117623555 sapC APECO1_455 - peptide ABC transporter permease 1250 50.83 0 1420579..1421544 - 321 117623556 sapB APECO1_456 - peptide transport system permease protein SapB 1251 53.53 0 1421541..1423184 - 547 117623557 sapA APECO1_457 - peptide transport periplasmic protein SapA precursor 1252 51.86 0 1424169..1425161 - 330 117623558 pspF APECO1_458 - phage shock protein operon transcriptional activator 1253 49.18 0 1425312..1425980 + 222 117623559 pspA APECO1_459 - phage shock protein PspA 1254 50.56 0 1426258..1426617 + 119 117623560 pspC APECO1_460 - DNA-binding transcriptional activator PspC 1255 49.84 0 1426922..1427236 + 104 117623561 pspE APECO1_461 - thiosulfate:cyanide sulfurtransferase (rhodanese) 1256 44.00 -1 1427419..1429125 + 568 117623562 ycjM APECO1_462 - putative sucrose phosphorylase 1257 51.35 0 1429139..1430431 + 430 117623563 ycjN APECO1_463 - putative ABC transporter periplasmic binding protein YcjN precursor 1258 53.63 0 1430452..1431333 + 293 117623564 ycjO APECO1_464 - putative binding-protein dependent transport protein 1259 52.43 0 1431320..1432162 + 280 117623565 ycjP APECO1_465 - ABC transporter permease 1260 57.12 +1 1432193..1432915 + 240 117623566 ycjQ APECO1_466 - zinc-type alcohol dehydrogenase-like protein YcjQ 1261 51.63 0 1433255..1434052 + 265 117623567 ycjR APECO1_467 - putative transient receptor potential locus 1262 54.92 0 1434062..1435117 + 351 117623568 ycjS APECO1_468 - oxidoreductase YcjS 1263 53.75 0 1435114..1437381 + 755 117623569 ycjT APECO1_469 - transport protein YcjT 1264 55.45 0 1437378..1438037 + 219 117623570 ycjU APECO1_470 - putative beta-phosphoglucomutase 1265 49.86 0 1438051..1439133 + 360 117623571 ycjV APECO1_471 - ABC transporter ATP-binding protein 1266 48.90 0 1439178..1440083 + 301 117623572 ompG APECO1_472 - outer membrane protein G precursor 1267 45.05 -1 1440134..1441132 - 332 117623573 ycjW APECO1_473 - transcriptional regulator YcjW 1268 54.01 0 1441216..1442685 + 489 117623574 ycjX APECO1_474 - hypothetical protein 1269 56.59 +1 1442682..1443743 + 353 117623575 ycjF APECO1_475 - hypothetical protein 1270 52.08 0 1443891..1445432 + 513 117623576 tyrR APECO1_476 - DNA-binding transcriptional regulator TyrR 1271 51.48 0 1445476..1445982 - 168 117623577 tpx APECO1_477 - thiol peroxidase 1272 54.14 0 1446101..1447066 + 321 117623578 ycjG APECO1_478 - hypothetical protein 1273 53.91 0 1447041..1447769 - 242 117623579 ycjI APECO1_479 - murein peptide amidase A 1274 43.04 -1 1448060..1448698 - 212 117623580 - APECO1_480 - hypothetical protein 1275 48.45 0 1448769..1449701 - 310 117623581 ycjY APECO1_481 - hypothetical protein 1276 47.00 0 1449827..1450726 + 299 117623582 ycjZ APECO1_482 - transcriptional regulator YcjZ 1277 48.26 0 1451042..1452676 + 544 117623583 mppA APECO1_483 - periplasmic murein peptide-binding protein precursor 1278 43.31 -1 1452727..1453758 - 343 117623584 ynaI APECO1_484 - hypothetical protein 1279 45.35 -1 1454002..1454259 + 85 117623585 ynaJ APECO1_485 - putative inner membrane protein 1280 50.68 0 1454309..1455259 - 316 117623586 - APECO1_486 - universal stress protein UspE 1281 49.69 0 1455411..1456205 - 264 117623587 fnr APECO1_487 - fumarate/nitrate reduction transcriptional regulator 1282 53.29 0 1456358..1456873 - 171 117623588 ogt APECO1_488 - O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1283 45.71 -1 1457404..1458219 - 271 117623589 - APECO1_489 - hypothetical protein 1284 46.32 0 1458313..1459344 + 343 117623590 hlyD APECO1_490 - putative secretion protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0