version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1142 47.06 0 1301996..1302454 - 152 117623448 ychJ APECO1_347 - hypothetical protein 1143 50.26 0 1302528..1303472 + 314 117623449 ychK APECO1_348 - hypothetical protein 1144 48.52 0 1303564..1304577 + 337 117623450 rssB APECO1_349 - response regulator of RpoS 1145 46.75 0 1304779..1305687 + 302 117623451 galU APECO1_350 - UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1146 47.10 0 1305831..1306244 - 137 117623452 hns APECO1_351 - global DNA-binding transcriptional dual regulator H-NS 1147 42.07 -1 1306848..1307465 + 205 117623453 tdk APECO1_352 - thymidine kinase 1148 53.81 0 1307592..1308797 - 401 117623454 insG APECO1_354 - transposase InsG for insertion sequence element IS4 1149 50.52 0 1308923..1311598 - 891 117623455 adhE APECO1_355 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1150 47.69 0 1312075..1312722 + 215 117623456 ychE APECO1_356 - hypothetical protein 1151 33.67 -2 1312880..1313176 - 98 117623457 - APECO1_357 - hypothetical protein 1152 47.18 0 1313388..1315091 + 567 117623458 oppA APECO1_358 - periplasmic oligopeptide-binding protein precursor 1153 46.15 -1 1315177..1316097 + 306 117623459 oppB APECO1_359 - oligopeptide transporter permease 1154 52.59 0 1316112..1317020 + 302 117623460 oppC APECO1_360 - oligopeptide transporter subunit 1155 51.97 0 1317032..1318045 + 337 117623461 oppD APECO1_361 - oligopeptide transporter ATP-binding component 1156 52.24 0 1318042..1319046 + 334 117623462 oppF APECO1_362 - oligopeptide transport ATP-binding protein OppF 1157 48.28 0 1319099..1319506 - 135 117623463 yciU APECO1_363 - dsDNA-mimic protein 1158 51.47 0 1319463..1320923 - 486 117623464 cls APECO1_364 - cardiolipin synthetase 1159 48.77 0 1320955..1321239 + 94 117623465 - APECO1_365 - hypothetical protein 1160 42.53 -1 1321294..1322565 - 423 117623466 kch APECO1_366 - voltage-gated potassium channel 1161 50.17 0 1322847..1323143 - 98 162317579 yciI APECO1_367 - YciI-like protein 1162 53.55 0 1323352..1324083 + 243 117623468 tonB APECO1_368 - transport protein TonB 1163 48.87 0 1324123..1324521 - 132 117623469 - APECO1_369 - acyl-CoA thioester hydrolase 1164 46.48 0 1324627..1325166 - 179 117623470 yciB APECO1_370 - intracellular septation protein A 1165 49.19 0 1325196..1325939 - 247 117623471 yciC APECO1_371 - hypothetical protein 1166 48.54 0 1326217..1326933 + 238 117623472 ompW APECO1_372 - outer membrane protein W 1167 46.42 0 1326979..1328109 - 376 117623473 intO APECO1_373 - putative integrase for prophage CP-933O 1168 48.87 0 1328400..1330871 - 823 117623474 exoO APECO1_374 - putative exonuclease VIII, ds DNA exonuclease encoded by prophage 1169 41.76 -1 1330934..1331479 + 181 117623475 - APECO1_375 - hypothetical protein 1170 43.51 -1 1332735..1333373 - 212 117623476 - APECO1_376 - putative repressor protein encoded within prophage CP-933O 1171 47.84 0 1333453..1333707 + 84 117623477 - APECO1_377 - hypothetical protein 1172 51.61 0 1333619..1334116 + 165 117623478 - APECO1_378 - hypothetical protein 1173 54.39 0 1334188..1335246 + 352 117623479 - APECO1_379 - hypothetical protein 1174 48.46 0 1335287..1335709 + 140 117623480 - APECO1_380 - hypothetical protein 1175 37.83 -2 1335751..1336863 + 370 117623481 - APECO1_381 - hypothetical protein 1176 39.12 -2 1336879..1337880 + 333 117623482 - APECO1_382 - hypothetical protein 1177 42.61 -1 1337992..1338282 + 96 117623483 - APECO1_383 - hypothetical protein 1178 54.66 0 1338692..1339099 + 135 117623484 - APECO1_384 - hypothetical protein 1179 54.25 0 1339101..1340147 + 348 117623485 ydfU APECO1_385 - hypothetical protein 1180 51.73 0 1340160..1340534 + 124 117623486 rusA APECO1_386 - endodeoxyribonuclease RusA 1181 50.24 0 1340531..1341352 + 273 117623487 - APECO1_387 - cryptic prophage CP-933M antitermination protein Q-like protein 1182 53.05 0 1341925..1342974 + 349 117623488 - APECO1_388 - putative DNA adenine methyltransferase encoded by prophage CP-933O 1183 52.34 0 1344156..1344476 + 106 117623489 - APECO1_389 - lambdoid prophage DLP12 lysis protein S-like protein 1184 48.41 0 1344481..1344825 + 114 117623490 ydfR APECO1_390 - hypothetical protein 1185 46.89 0 1344791..1345063 - 90 117623491 - APECO1_391 - hypothetical protein 1186 53.74 0 1345263..1345703 + 146 117623492 - APECO1_392 - putative phage lysozyme 1187 46.88 0 1345646..1345933 - 95 117623493 - APECO1_393 - hypothetical protein 1188 52.69 0 1346002..1346466 + 154 117623494 - APECO1_394 - bacteriophage lambda cell lysis protein 1189 31.46 -2 1346774..1347199 - 141 117623495 ydfO APECO1_395 - hypothetical protein 1190 46.89 0 1347623..1348411 + 262 117623496 nohA2 APECO1_396 - prophage Qin DNA packaging protein NU1-like protein 1191 51.90 0 1348341..1350311 + 656 117623497 - APECO1_397 - putative DNA packaging protein of prophage; terminase large subunit 1192 56.18 +1 1350498..1352090 + 530 117623498 - APECO1_398 - putative capsid protein of prophage 1193 60.62 +2 1352080..1353585 + 501 117623499 - APECO1_399 - putative capsid assembly protein of prophage 1194 54.84 0 1353601..1353972 - 123 117623500 - APECO1_400 - hypothetical protein 1195 53.45 0 1354027..1355055 + 342 117623501 - APECO1_401 - putative capsid protein of prophage 1196 55.32 0 1355059..1355490 + 143 117623502 - APECO1_402 - hypothetical protein 1197 57.06 +1 1355483..1355836 + 117 117623503 - APECO1_403 - putative head-tail joining protein of prophage 1198 51.87 0 1355852..1356385 + 177 117623504 - APECO1_404 - putative minor tail protein 1199 52.53 0 1356382..1356777 + 131 117623505 - APECO1_405 - putative tail component of prophage 1200 54.08 0 1356878..1358212 - 444 117623506 - APECO1_406 - hypothetical protein 1201 58.59 +1 1358403..1360976 + 857 117623507 - APECO1_407 - putative tail component of prophage CP-933O 1202 57.58 +1 1360973..1361302 + 109 117623508 - APECO1_408 - minor tail protein 1203 55.94 +1 1361302..1362000 + 232 117623509 - APECO1_409 - minor tail protein 1204 59.68 +1 1362005..1362748 + 247 117623510 - APECO1_410 - putative tail fiber component K of prophage 1205 57.17 +1 1362646..1363287 + 213 117623511 - APECO1_411 - putative tail component of prophage CP-933K 1206 36.28 -2 1363361..1363699 + 112 117623512 - APECO1_412 - hypothetical protein 1207 56.87 +1 1363766..1367245 + 1159 117623513 - APECO1_413 - putative tail component of prophage 1208 54.67 0 1367313..1367912 + 199 117623514 - APECO1_414 - hypothetical protein 1209 54.18 0 1368064..1371171 + 1035 117623515 - APECO1_415 - putative tail fiber protein 1210 47.86 0 1371171..1371755 + 194 117623516 ynaC APECO1_416 - phage-related tail fiber assembly protein G 1211 41.11 -2 1371810..1372478 - 222 117623517 - APECO1_417 - hypothetical protein 1212 48.15 0 1372624..1372974 - 116 117623518 - APECO1_418 - hypothetical protein 1213 40.24 -2 1373577..1374083 - 168 117623519 - APECO1_419 - hypothetical protein 1214 42.15 -1 1374129..1374650 - 173 117623520 yciF APECO1_420 - putative structural proteins 1215 54.89 0 1375275..1376081 - 268 117623521 trpA APECO1_421 - tryptophan synthase subunit alpha 1216 54.44 0 1376081..1377274 - 397 117623522 trpB APECO1_422 - tryptophan synthase subunit beta 1217 52.32 0 1377286..1378644 - 452 117623523 trpC APECO1_423 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1218 56.33 +1 1378648..1380243 - 531 117623524 trpD APECO1_424 - bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase 1219 54.25 0 1380243..1381805 - 520 117623525 trpE APECO1_425 - anthranilate synthase component I 1220 54.12 0 1382100..1382960 + 286 117623526 trpH APECO1_426 - hypothetical protein 1221 49.62 0 1382921..1383577 + 218 117623527 - APECO1_427 - hypothetical protein 1222 47.18 0 1383602..1385500 + 632 117623528 yciQ APECO1_428 - hypothetical protein 1223 53.31 0 1385713..1386588 + 291 117623529 rluB APECO1_429 - 23S rRNA pseudouridylate synthase B 1224 50.42 0 1386628..1387218 - 196 117623530 btuR APECO1_430 - cob(I)yrinic acid a,c-diamide adenosyltransferase 1225 52.31 0 1387215..1387973 - 252 117623531 yciK APECO1_431 - short chain dehydrogenase 1226 50.48 0 1388193..1389242 + 349 117623532 sohB APECO1_432 - putative periplasmic protease 1227 47.22 0 1389278..1389529 - 83 117623533 - APECO1_433 - hypothetical protein 1228 51.70 0 1389867..1392506 + 879 117623534 topA APECO1_434 - DNA topoisomerase I 1229 48.72 0 1392716..1393690 + 324 117623535 cysB APECO1_435 - transcriptional regulator CysB 1230 52.69 0 1394678..1397353 + 891 117623536 acnA APECO1_436 - aconitate hydratase 1231 48.93 0 1397417..1398070 - 217 117623537 ribA APECO1_437 - GTP cyclohydrolase II 1232 50.33 0 1398177..1398941 + 254 117623538 pgpB APECO1_438 - phosphatidylglycerophosphatase B 1233 50.16 0 1399090..1399398 + 102 117623539 yciS APECO1_439 - hypothetical protein 1234 51.37 0 1399405..1400574 + 389 117623540 yciM APECO1_440 - hypothetical protein 1235 53.56 0 1400706..1401491 + 261 117623541 pyrF APECO1_441 - orotidine 5'-phosphate decarboxylase 1236 50.61 0 1401500..1401829 + 109 117623542 yciH APECO1_442 - translation initiation factor Sui1 1237 48.67 0 1402442..1403191 - 249 117623543 - APECO1_443 - putative DEOR-type transcriptional regulator 1238 48.39 0 1403602..1405587 - 661 117623544 yciR APECO1_444 - RNase II stability modulator 1239 53.13 0 1405822..1407756 - 644 117623545 rnb APECO1_445 - exoribonuclease II 1240 51.24 0 1407824..1408951 - 375 117623546 yciW APECO1_446 - hypothetical protein 1241 53.61 0 1409096..1409884 - 262 117623547 fabI APECO1_447 - enoyl-(acyl carrier protein) reductase 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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