version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1094 51.82 0 1244335..1245876 - 513 117623400 nhaB APECO1_298 - sodium/proton antiporter 1095 50.69 0 1246098..1246817 + 239 117623401 fadR APECO1_299 - fatty acid metabolism regulator 1096 49.77 0 1246980..1248512 - 510 117623402 ycgB APECO1_300 - hypothetical protein 1097 56.63 +1 1248836..1250140 + 434 117623403 dadA APECO1_301 - D-amino acid dehydrogenase small subunit 1098 57.42 +1 1250150..1251220 + 356 117623404 dadX APECO1_302 - alanine racemase 1099 54.00 0 1251277..1252887 - 536 117623405 ycgO APECO1_303 - potassium/proton antiporter 1100 52.13 0 1253108..1254022 - 304 117623406 ldcA APECO1_304 - L,D-carboxypeptidase A 1101 50.83 0 1254008..1254733 + 241 117623407 mltE APECO1_305 - murein transglycosylase E 1102 50.75 0 1254735..1255469 - 244 117623408 - APECO1_306 - hypothetical protein 1103 54.51 0 1255670..1255924 + 84 117623409 ymgE APECO1_307 - transglycosylase associated protein YmgE 1104 50.03 0 1255974..1257944 - 656 117623410 prrA APECO1_308 - TonB dependent outer membrane receptor 1105 51.93 0 1257970..1258824 - 284 117623411 modD APECO1_309 - molybdenum transport protein ModD 1106 54.98 0 1258821..1259633 - 270 117623412 - APECO1_310 - hypothetical protein 1107 53.73 0 1259643..1260539 - 298 117623413 - APECO1_311 - putative iron compound ABC transporter, ATP-binding protein 1108 54.64 0 1260398..1261378 - 326 117623414 - APECO1_312 - putative iron compound ABC transporter, permease protein 1109 52.77 0 1261378..1262442 - 354 117623415 - APECO1_313 - putative iron compound ABC transporter, periplasmic-binding protein 1110 51.41 0 1262737..1264434 - 565 117623416 treA APECO1_314 - trehalase 1111 50.14 0 1264753..1266174 - 473 117623417 ycgC APECO1_315 - dihydroxyacetone kinase subunit M 1112 53.81 0 1266182..1266889 - 235 117623418 dhaL APECO1_316 - dihydroxyacetone kinase ADP-binding subunit 1113 52.59 0 1266825..1267925 - 366 117623419 dhaK APECO1_317 - dihydroxyacetone kinase subunit DhaK 1114 51.43 0 1268114..1270042 + 642 117623420 - APECO1_318 - DNA-binding transcriptional regulator DhaR 1115 51.37 0 1270446..1271537 - 363 117623421 ychF APECO1_319 - translation-associated GTPase 1116 47.92 0 1271654..1272037 - 127 117623422 pth APECO1_320 - peptidyl-tRNA hydrolase 1117 52.69 0 1272516..1272794 + 92 117623423 ychH APECO1_321 - hypothetical protein 1118 55.41 0 1272849..1274501 - 550 117623424 ychM APECO1_322 - putative sulfate transporter YchM 1119 52.66 0 1274653..1275666 - 337 117623425 prsA APECO1_323 - ribose-phosphate pyrophosphokinase 1120 52.93 0 1275751..1276602 - 283 117623426 ychB APECO1_324 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1121 49.13 0 1276602..1277291 - 229 117623427 lolB APECO1_325 - outer membrane lipoprotein LolB 1122 53.22 0 1277439..1278695 + 418 117623428 hemA APECO1_327 - glutamyl-tRNA reductase 1123 52.54 0 1278737..1279819 + 360 117623429 prfA APECO1_328 - peptide chain release factor 1 1124 55.52 0 1279819..1280652 + 277 117623430 hemK APECO1_329 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1125 47.84 0 1280649..1281041 + 130 117623431 - APECO1_330 - putative transcriptional regulator 1126 46.17 -1 1281045..1281854 + 269 117623432 - APECO1_331 - putative transcriptional regulator 1127 51.35 0 1281890..1282744 + 284 117623433 - APECO1_332 - 2-dehydro-3-deoxyphosphooctonate aldolase 1128 47.73 0 1283405..1284592 - 395 117623434 chaA APECO1_333 - calcium/sodium:proton antiporter 1129 46.00 -1 1284769..1285068 - 99 117623435 - APECO1_334 - hypothetical protein 1130 55.09 0 1285142..1285858 + 238 117623436 chaC APECO1_335 - cation transport protein ChaC 1131 50.85 0 1285902..1286255 - 117 117623437 ychN APECO1_336 - hypothetical protein 1132 51.67 0 1286581..1287834 + 417 117623438 ychO APECO1_337 - hypothetical protein 1133 51.61 0 1287835..1288485 - 216 117623439 narL APECO1_338 - transcriptional regulator NarL 1134 53.26 0 1288478..1290274 - 598 117623440 narX APECO1_339 - nitrate/nitrite sensor protein NarX 1135 53.59 0 1290613..1292004 + 463 117623441 narK APECO1_340 - nitrate/nitrite transporter NarK 1136 54.89 0 1292397..1296140 + 1247 117623442 narG APECO1_341 - nitrate reductase 1, alpha subunit 1137 53.93 0 1296137..1297675 + 512 117623443 narH APECO1_342 - nitrate reductase 1, beta (Fe-S) subunit 1138 55.70 +1 1297672..1298382 + 236 117623444 narJ APECO1_343 - nitrate reductase 1 delta subunit 1139 55.31 0 1298382..1299059 + 225 117623445 narI APECO1_344 - respiratory nitrate reductase 1 gamma chain 1140 46.92 0 1299112..1300311 - 399 117623446 - APECO1_345 - putative transposase 1141 47.81 0 1301104..1301946 - 280 117623447 purU APECO1_346 - formyltetrahydrofolate deformylase 1142 47.06 0 1301996..1302454 - 152 117623448 ychJ APECO1_347 - hypothetical protein 1143 50.26 0 1302528..1303472 + 314 117623449 ychK APECO1_348 - hypothetical protein 1144 48.52 0 1303564..1304577 + 337 117623450 rssB APECO1_349 - response regulator of RpoS 1145 46.75 0 1304779..1305687 + 302 117623451 galU APECO1_350 - UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1146 47.10 0 1305831..1306244 - 137 117623452 hns APECO1_351 - global DNA-binding transcriptional dual regulator H-NS 1147 42.07 -1 1306848..1307465 + 205 117623453 tdk APECO1_352 - thymidine kinase 1148 53.81 0 1307592..1308797 - 401 117623454 insG APECO1_354 - transposase InsG for insertion sequence element IS4 1149 50.52 0 1308923..1311598 - 891 117623455 adhE APECO1_355 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1150 47.69 0 1312075..1312722 + 215 117623456 ychE APECO1_356 - hypothetical protein 1151 33.67 -2 1312880..1313176 - 98 117623457 - APECO1_357 - hypothetical protein 1152 47.18 0 1313388..1315091 + 567 117623458 oppA APECO1_358 - periplasmic oligopeptide-binding protein precursor 1153 46.15 -1 1315177..1316097 + 306 117623459 oppB APECO1_359 - oligopeptide transporter permease 1154 52.59 0 1316112..1317020 + 302 117623460 oppC APECO1_360 - oligopeptide transporter subunit 1155 51.97 0 1317032..1318045 + 337 117623461 oppD APECO1_361 - oligopeptide transporter ATP-binding component 1156 52.24 0 1318042..1319046 + 334 117623462 oppF APECO1_362 - oligopeptide transport ATP-binding protein OppF 1157 48.28 0 1319099..1319506 - 135 117623463 yciU APECO1_363 - dsDNA-mimic protein 1158 51.47 0 1319463..1320923 - 486 117623464 cls APECO1_364 - cardiolipin synthetase 1159 48.77 0 1320955..1321239 + 94 117623465 - APECO1_365 - hypothetical protein 1160 42.53 -1 1321294..1322565 - 423 117623466 kch APECO1_366 - voltage-gated potassium channel 1161 50.17 0 1322847..1323143 - 98 162317579 yciI APECO1_367 - YciI-like protein 1162 53.55 0 1323352..1324083 + 243 117623468 tonB APECO1_368 - transport protein TonB 1163 48.87 0 1324123..1324521 - 132 117623469 - APECO1_369 - acyl-CoA thioester hydrolase 1164 46.48 0 1324627..1325166 - 179 117623470 yciB APECO1_370 - intracellular septation protein A 1165 49.19 0 1325196..1325939 - 247 117623471 yciC APECO1_371 - hypothetical protein 1166 48.54 0 1326217..1326933 + 238 117623472 ompW APECO1_372 - outer membrane protein W 1167 46.42 0 1326979..1328109 - 376 117623473 intO APECO1_373 - putative integrase for prophage CP-933O 1168 48.87 0 1328400..1330871 - 823 117623474 exoO APECO1_374 - putative exonuclease VIII, ds DNA exonuclease encoded by prophage 1169 41.76 -1 1330934..1331479 + 181 117623475 - APECO1_375 - hypothetical protein 1170 43.51 -1 1332735..1333373 - 212 117623476 - APECO1_376 - putative repressor protein encoded within prophage CP-933O 1171 47.84 0 1333453..1333707 + 84 117623477 - APECO1_377 - hypothetical protein 1172 51.61 0 1333619..1334116 + 165 117623478 - APECO1_378 - hypothetical protein 1173 54.39 0 1334188..1335246 + 352 117623479 - APECO1_379 - hypothetical protein 1174 48.46 0 1335287..1335709 + 140 117623480 - APECO1_380 - hypothetical protein 1175 37.83 -2 1335751..1336863 + 370 117623481 - APECO1_381 - hypothetical protein 1176 39.12 -2 1336879..1337880 + 333 117623482 - APECO1_382 - hypothetical protein 1177 42.61 -1 1337992..1338282 + 96 117623483 - APECO1_383 - hypothetical protein 1178 54.66 0 1338692..1339099 + 135 117623484 - APECO1_384 - hypothetical protein 1179 54.25 0 1339101..1340147 + 348 117623485 ydfU APECO1_385 - hypothetical protein 1180 51.73 0 1340160..1340534 + 124 117623486 rusA APECO1_386 - endodeoxyribonuclease RusA 1181 50.24 0 1340531..1341352 + 273 117623487 - APECO1_387 - cryptic prophage CP-933M antitermination protein Q-like protein 1182 53.05 0 1341925..1342974 + 349 117623488 - APECO1_388 - putative DNA adenine methyltransferase encoded by prophage CP-933O 1183 52.34 0 1344156..1344476 + 106 117623489 - APECO1_389 - lambdoid prophage DLP12 lysis protein S-like protein 1184 48.41 0 1344481..1344825 + 114 117623490 ydfR APECO1_390 - hypothetical protein 1185 46.89 0 1344791..1345063 - 90 117623491 - APECO1_391 - hypothetical protein 1186 53.74 0 1345263..1345703 + 146 117623492 - APECO1_392 - putative phage lysozyme 1187 46.88 0 1345646..1345933 - 95 117623493 - APECO1_393 - hypothetical protein 1188 52.69 0 1346002..1346466 + 154 117623494 - APECO1_394 - bacteriophage lambda cell lysis protein 1189 31.46 -2 1346774..1347199 - 141 117623495 ydfO APECO1_395 - hypothetical protein 1190 46.89 0 1347623..1348411 + 262 117623496 nohA2 APECO1_396 - prophage Qin DNA packaging protein NU1-like protein 1191 51.90 0 1348341..1350311 + 656 117623497 - APECO1_397 - putative DNA packaging protein of prophage; terminase large subunit 1192 56.18 +1 1350498..1352090 + 530 117623498 - APECO1_398 - putative capsid protein of prophage 1193 60.62 +2 1352080..1353585 + 501 117623499 - APECO1_399 - putative capsid assembly protein of prophage 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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