version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1013 51.08 0 1176195..1176656 - 153 117623319 - APECO1_216 - putative phosphohydrolase 1014 52.14 0 1176666..1177319 - 217 117623320 rluE APECO1_217 - 23S rRNA pseudouridine synthase E 1015 50.20 0 1177491..1178741 + 416 117623321 - APECO1_218 - isocitrate dehydrogenase 1016 43.31 -1 1178855..1179997 - 380 117623322 int APECO1_219 - prophage lambda integrase 1017 46.53 0 1180553..1180984 + 143 117623323 - APECO1_220 - hypothetical protein 1018 52.42 0 1181863..1182543 - 226 117623324 - APECO1_221 - putative exonuclease encoded by prophage CP-933K 1019 52.29 0 1182540..1183325 - 261 117623325 - APECO1_222 - putative recombination protein Bet of prophage 1020 49.83 0 1183331..1183627 - 98 117623326 gamW APECO1_223 - putative host-nuclease inhibitor protein Gam of bacteriphage 1021 41.85 -1 1183703..1183972 - 89 117623327 kil1 APECO1_224 - Kil protein 1022 38.21 -2 1184052..1184420 - 122 117623328 - APECO1_225 - putative single-stranded DNA binding protein of prophage 1023 41.07 -2 1185017..1185598 + 193 117623329 - APECO1_226 - putative superinfection exclusion protein B of prophage 1024 49.86 0 1185615..1185959 - 114 117623330 - APECO1_227 - N protein 1025 40.64 -2 1186324..1187076 - 250 117623331 - APECO1_228 - hypothetical protein 1026 39.68 -2 1187073..1187513 - 146 117623332 - APECO1_229 - hypothetical protein 1027 46.26 0 1187670..1188365 - 231 117623333 - APECO1_230 - putative CI repressor of bacteriophage 1028 43.51 -1 1188371..1188655 + 94 117623334 - APECO1_231 - hypothetical protein 1029 45.79 -1 1188797..1189093 + 98 117623335 - APECO1_232 - putative regulatory protein CII of bacteriophage 1030 47.44 0 1189126..1190025 + 299 117623336 - APECO1_233 - putative replication protein O of bacteriophage 1031 53.28 0 1190022..1190723 + 233 117623337 - APECO1_234 - putative replication protein P of bacteriophage 1032 50.17 0 1190720..1191010 + 96 117623338 - APECO1_235 - putative exclusion protein ren of prophage 1033 50.34 0 1191084..1191524 + 146 117623339 ninB APECO1_236 - hypothetical protein 1034 52.72 0 1191461..1192048 + 195 117623340 - APECO1_237 - putative DNA N-6-adenine-methyltransferase of bacteriophage 1035 41.67 -1 1192182..1192565 + 127 117623341 - APECO1_238 - hypothetical protein 1036 53.17 0 1192772..1193134 + 120 117623342 rusA APECO1_239 - endodeoxyribonuclease RUS 1037 42.71 -1 1193357..1193740 + 127 117623343 ybcQ APECO1_240 - antitermination protein Q-like protein 1038 42.78 -1 1193929..1195071 - 380 117623344 nmpC APECO1_241 - outer membrane porin protein NmpC precursor 1039 47.19 0 1195815..1196312 + 165 117623345 ybcS2 APECO1_242 - bacteriophage lambda lysozyme-like protein 1040 51.27 0 1196297..1196770 + 157 117623346 - APECO1_243 - putative Rz endopeptidase from lambdoid prophage 1041 40.13 -2 1196802..1197110 - 102 117623347 bor APECO1_244 - lambda prophage Bor protein 1042 45.93 -1 1197522..1197902 + 126 117623348 tonB APECO1_245 - truncated TonB-like membrane protein encoded within prophage 1043 49.72 0 1198025..1198378 - 117 117623349 - APECO1_246 - hypothetical protein 1044 50.09 0 1198763..1199311 + 182 117623350 nohA2 APECO1_247 - prophage Qin DNA packaging protein NU1-like protein 1045 52.36 0 1199241..1201211 + 656 117623351 - APECO1_248 - putative DNA packaging protein of prophage; terminase large subunit 1046 56.07 +1 1201368..1202990 + 540 117623352 - APECO1_249 - putative capsid protein of prophage 1047 60.03 +1 1202980..1204485 + 501 117623353 - APECO1_250 - head-tail preconnector protein gp5 of bacteriophage 1048 55.91 +1 1204501..1204872 - 123 117623354 - APECO1_251 - hypothetical protein 1049 51.12 0 1204927..1205955 + 342 117623355 - APECO1_252 - putative capsid protein of prophage 1050 53.66 0 1205959..1206381 + 140 117623356 - APECO1_253 - hypothetical protein 1051 55.13 0 1206338..1206727 + 129 117623357 - APECO1_254 - putative head-tail joining protein of prophage 1052 55.79 +1 1206739..1207317 + 192 117623358 - APECO1_255 - putative tail fiber component Z of prophage 1053 53.28 0 1207314..1207709 + 131 117623359 - APECO1_256 - putative tail component of prophage 1054 57.59 +1 1207687..1208457 + 256 117623360 - APECO1_257 - putative tail component of prophage CP-933X 1055 54.14 0 1208473..1208895 + 140 117623361 - APECO1_258 - putative tail component of prophage 1056 55.17 0 1208877..1209311 + 144 117623362 - APECO1_259 - putative tail component of prophage 1057 58.08 +1 1209304..1211865 + 853 117623363 - APECO1_260 - putative tail component of prophage 1058 58.18 +1 1211862..1212191 + 109 117623364 - APECO1_261 - minor tail protein 1059 54.94 0 1212191..1212889 + 232 117623365 - APECO1_262 - putative tail component of prophage 1060 59.95 +1 1212895..1213638 + 247 117623366 - APECO1_263 - putative tail fiber component K of prophage 1061 59.38 +1 1213536..1214207 + 223 117623367 - APECO1_265 - putative tail component of prophage 1062 57.47 +1 1214268..1217018 + 916 117623368 - APECO1_266 - putative tail component of prophage 1063 48.88 0 1216993..1217751 + 252 117623369 - APECO1_267 - putative tail component of prophage 1064 47.75 0 1217804..1219870 + 688 117623370 - APECO1_268 - hypothetical protein 1065 42.65 -1 1219867..1220145 + 92 117623371 - APECO1_269 - hypothetical protein 1066 53.06 0 1220158..1220451 + 97 117623372 - APECO1_270 - hypothetical protein 1067 49.30 0 1220543..1221400 - 285 117623373 sitD APECO1_271 - ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD 1068 52.10 0 1221397..1222254 - 285 117623374 sitC APECO1_272 - ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC 1069 51.21 0 1222251..1223078 - 275 117623375 sitB APECO1_273 - ABC Mn+2/Fe+2 transporter, ATPase subunit SitB 1070 48.42 0 1223078..1223992 - 304 117623376 sitA APECO1_274 - ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein 1071 34.11 -2 1224679..1225449 + 256 117623377 - APECO1_275 - hypothetical protein 1072 37.04 -2 1226335..1226739 - 134 117623378 ycgX APECO1_276 - hypothetical protein 1073 48.22 0 1226960..1227691 - 243 117623379 ycgE APECO1_277 - putative transcriptional regulator 1074 43.07 -1 1227896..1229107 - 403 117623380 ycgF APECO1_278 - hypothetical protein 1075 36.26 -2 1229700..1229972 + 90 117623381 - APECO1_279 - hypothetical protein 1076 34.46 -2 1230001..1230267 + 88 117623382 ymgB APECO1_280 - hypothetical protein 1077 43.89 -1 1231100..1231819 + 239 117623383 - APECO1_281 - hypothetical protein 1078 36.24 -2 1233036..1233413 + 125 117623384 - APECO1_282 - hypothetical protein 1079 48.86 0 1233559..1234086 + 175 117623385 - APECO1_283 - hypothetical protein 1080 44.35 -1 1234144..1234479 - 111 117623386 - APECO1_284 - hypothetical protein 1081 52.98 0 1234483..1234767 - 94 117623387 - APECO1_285 - hypothetical protein 1082 50.15 0 1235420..1235746 + 108 117623388 - APECO1_286 - hypothetical protein 1083 42.70 -1 1236119..1236385 - 88 117623389 minE APECO1_287 - cell division topological specificity factor MinE 1084 49.69 0 1236389..1237201 - 270 117623390 minD APECO1_288 - cell division inhibitor MinD 1085 50.72 0 1237225..1237920 - 231 117623391 minC APECO1_289 - septum formation inhibitor 1086 41.73 -1 1238440..1238808 + 122 117623392 ycgJ APECO1_290 - hypothetical protein 1087 42.79 -1 1238928..1239329 - 133 117623393 ycgK APECO1_291 - hypothetical protein 1088 43.12 -1 1239538..1239864 + 108 117623394 - APECO1_292 - hypothetical protein 1089 52.58 0 1239936..1240595 + 219 117623395 ycgM APECO1_293 - hypothetical protein 1090 47.20 0 1240687..1241133 + 148 162317580 ycgN APECO1_294 - hypothetical protein 1091 48.10 0 1241927..1242346 + 139 117623397 umuD APECO1_295 - DNA polymerase V subunit UmuD 1092 50.67 0 1242346..1243614 + 422 117623398 umuC APECO1_296 - DNA polymerase V subunit UmuC 1093 52.33 0 1243659..1244195 - 178 117623399 dsbB APECO1_297 - disulfide bond formation protein B 1094 51.82 0 1244335..1245876 - 513 117623400 nhaB APECO1_298 - sodium/proton antiporter 1095 50.69 0 1246098..1246817 + 239 117623401 fadR APECO1_299 - fatty acid metabolism regulator 1096 49.77 0 1246980..1248512 - 510 117623402 ycgB APECO1_300 - hypothetical protein 1097 56.63 +1 1248836..1250140 + 434 117623403 dadA APECO1_301 - D-amino acid dehydrogenase small subunit 1098 57.42 +1 1250150..1251220 + 356 117623404 dadX APECO1_302 - alanine racemase 1099 54.00 0 1251277..1252887 - 536 117623405 ycgO APECO1_303 - potassium/proton antiporter 1100 52.13 0 1253108..1254022 - 304 117623406 ldcA APECO1_304 - L,D-carboxypeptidase A 1101 50.83 0 1254008..1254733 + 241 117623407 mltE APECO1_305 - murein transglycosylase E 1102 50.75 0 1254735..1255469 - 244 117623408 - APECO1_306 - hypothetical protein 1103 54.51 0 1255670..1255924 + 84 117623409 ymgE APECO1_307 - transglycosylase associated protein YmgE 1104 50.03 0 1255974..1257944 - 656 117623410 prrA APECO1_308 - TonB dependent outer membrane receptor 1105 51.93 0 1257970..1258824 - 284 117623411 modD APECO1_309 - molybdenum transport protein ModD 1106 54.98 0 1258821..1259633 - 270 117623412 - APECO1_310 - hypothetical protein 1107 53.73 0 1259643..1260539 - 298 117623413 - APECO1_311 - putative iron compound ABC transporter, ATP-binding protein 1108 54.64 0 1260398..1261378 - 326 117623414 - APECO1_312 - putative iron compound ABC transporter, permease protein 1109 52.77 0 1261378..1262442 - 354 117623415 - APECO1_313 - putative iron compound ABC transporter, periplasmic-binding protein 1110 51.41 0 1262737..1264434 - 565 117623416 treA APECO1_314 - trehalase 1111 50.14 0 1264753..1266174 - 473 117623417 ycgC APECO1_315 - dihydroxyacetone kinase subunit M 1112 53.81 0 1266182..1266889 - 235 117623418 dhaL APECO1_316 - dihydroxyacetone kinase ADP-binding subunit 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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