version 1.0
Escherichia coli APEC O1, complete genome - 1..5082025 4428 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 989 53.70 0 1149966..1150505 + 179 117623295 ycfJ APECO1_191 - hypothetical protein 990 50.63 0 1150567..1151277 - 236 117623296 ycfQ APECO1_192 - putative transcriptional regulator 991 46.90 0 1151440..1151697 + 85 117623297 ycfR APECO1_193 - hypothetical protein 992 53.58 0 1151779..1152741 - 320 117623298 ycfS APECO1_194 - hypothetical protein 993 54.62 0 1152886..1156380 - 1164 117623299 mfd APECO1_195 - transcription-repair coupling factor 994 48.79 0 1156460..1157533 - 357 117623300 ycfT APECO1_196 - hypothetical protein 995 54.41 0 1157690..1158994 + 434 117623301 ycfU APECO1_197 - outer membrane-specific lipoprotein transporter subunit LolC 996 56.07 +1 1158849..1159688 + 279 117623302 lolD APECO1_198 - lipoprotein transporter ATP-binding subunit 997 52.05 0 1159688..1160932 + 414 117623303 ycfW APECO1_199 - outer membrane-specific lipoprotein transporter subunit LolE 998 52.96 0 1160961..1161872 + 303 117623304 ycfX APECO1_200 - N-acetyl-D-glucosamine kinase 999 50.85 0 1161888..1162709 + 273 117623305 cobB APECO1_201 - NAD-dependent deacetylase 1000 44.67 -1 1162847..1163737 - 296 117623306 ycfZ APECO1_202 - hypothetical protein 1001 42.66 -1 1163632..1164135 - 167 117623307 ymfA APECO1_203 - putative inner membrane protein 1002 51.10 0 1164151..1165197 - 348 117623308 potD APECO1_204 - spermidine/putrescine ABC transporter periplasmic substrate-binding protein 1003 50.19 0 1165194..1165988 - 264 117623309 potC APECO1_206 - spermidine/putrescine ABC transporter membrane protein 1004 50.70 0 1165985..1166842 - 285 117623310 potB APECO1_207 - spermidine/putrescine ABC transporter membrane protein 1005 51.19 0 1166826..1167962 - 378 117623311 potA APECO1_208 - putrescine/spermidine ABC transporter ATPase protein 1006 50.53 0 1168212..1169438 + 408 117623312 pepT APECO1_209 - peptidase T 1007 53.93 0 1169487..1170617 - 376 117623313 ycfD APECO1_210 - hypothetical protein 1008 50.86 0 1170684..1172144 - 486 117623314 phoQ APECO1_211 - sensor protein PhoQ 1009 47.17 0 1172144..1172815 - 223 117623315 phoP APECO1_212 - DNA-binding transcriptional regulator PhoP 1010 52.59 0 1172984..1174354 - 456 117623316 purB APECO1_213 - adenylosuccinate lyase 1011 56.64 +1 1174358..1175005 - 215 117623317 ycfC APECO1_214 - hypothetical protein 1012 53.65 0 1175035..1176186 - 383 117623318 trmU APECO1_215 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1013 51.08 0 1176195..1176656 - 153 117623319 - APECO1_216 - putative phosphohydrolase 1014 52.14 0 1176666..1177319 - 217 117623320 rluE APECO1_217 - 23S rRNA pseudouridine synthase E 1015 50.20 0 1177491..1178741 + 416 117623321 - APECO1_218 - isocitrate dehydrogenase 1016 43.31 -1 1178855..1179997 - 380 117623322 int APECO1_219 - prophage lambda integrase 1017 46.53 0 1180553..1180984 + 143 117623323 - APECO1_220 - hypothetical protein 1018 52.42 0 1181863..1182543 - 226 117623324 - APECO1_221 - putative exonuclease encoded by prophage CP-933K 1019 52.29 0 1182540..1183325 - 261 117623325 - APECO1_222 - putative recombination protein Bet of prophage 1020 49.83 0 1183331..1183627 - 98 117623326 gamW APECO1_223 - putative host-nuclease inhibitor protein Gam of bacteriphage 1021 41.85 -1 1183703..1183972 - 89 117623327 kil1 APECO1_224 - Kil protein 1022 38.21 -2 1184052..1184420 - 122 117623328 - APECO1_225 - putative single-stranded DNA binding protein of prophage 1023 41.07 -2 1185017..1185598 + 193 117623329 - APECO1_226 - putative superinfection exclusion protein B of prophage 1024 49.86 0 1185615..1185959 - 114 117623330 - APECO1_227 - N protein 1025 40.64 -2 1186324..1187076 - 250 117623331 - APECO1_228 - hypothetical protein 1026 39.68 -2 1187073..1187513 - 146 117623332 - APECO1_229 - hypothetical protein 1027 46.26 0 1187670..1188365 - 231 117623333 - APECO1_230 - putative CI repressor of bacteriophage 1028 43.51 -1 1188371..1188655 + 94 117623334 - APECO1_231 - hypothetical protein 1029 45.79 -1 1188797..1189093 + 98 117623335 - APECO1_232 - putative regulatory protein CII of bacteriophage 1030 47.44 0 1189126..1190025 + 299 117623336 - APECO1_233 - putative replication protein O of bacteriophage 1031 53.28 0 1190022..1190723 + 233 117623337 - APECO1_234 - putative replication protein P of bacteriophage 1032 50.17 0 1190720..1191010 + 96 117623338 - APECO1_235 - putative exclusion protein ren of prophage 1033 50.34 0 1191084..1191524 + 146 117623339 ninB APECO1_236 - hypothetical protein 1034 52.72 0 1191461..1192048 + 195 117623340 - APECO1_237 - putative DNA N-6-adenine-methyltransferase of bacteriophage 1035 41.67 -1 1192182..1192565 + 127 117623341 - APECO1_238 - hypothetical protein 1036 53.17 0 1192772..1193134 + 120 117623342 rusA APECO1_239 - endodeoxyribonuclease RUS 1037 42.71 -1 1193357..1193740 + 127 117623343 ybcQ APECO1_240 - antitermination protein Q-like protein 1038 42.78 -1 1193929..1195071 - 380 117623344 nmpC APECO1_241 - outer membrane porin protein NmpC precursor 1039 47.19 0 1195815..1196312 + 165 117623345 ybcS2 APECO1_242 - bacteriophage lambda lysozyme-like protein 1040 51.27 0 1196297..1196770 + 157 117623346 - APECO1_243 - putative Rz endopeptidase from lambdoid prophage 1041 40.13 -2 1196802..1197110 - 102 117623347 bor APECO1_244 - lambda prophage Bor protein 1042 45.93 -1 1197522..1197902 + 126 117623348 tonB APECO1_245 - truncated TonB-like membrane protein encoded within prophage 1043 49.72 0 1198025..1198378 - 117 117623349 - APECO1_246 - hypothetical protein 1044 50.09 0 1198763..1199311 + 182 117623350 nohA2 APECO1_247 - prophage Qin DNA packaging protein NU1-like protein 1045 52.36 0 1199241..1201211 + 656 117623351 - APECO1_248 - putative DNA packaging protein of prophage; terminase large subunit 1046 56.07 +1 1201368..1202990 + 540 117623352 - APECO1_249 - putative capsid protein of prophage 1047 60.03 +1 1202980..1204485 + 501 117623353 - APECO1_250 - head-tail preconnector protein gp5 of bacteriophage 1048 55.91 +1 1204501..1204872 - 123 117623354 - APECO1_251 - hypothetical protein 1049 51.12 0 1204927..1205955 + 342 117623355 - APECO1_252 - putative capsid protein of prophage 1050 53.66 0 1205959..1206381 + 140 117623356 - APECO1_253 - hypothetical protein 1051 55.13 0 1206338..1206727 + 129 117623357 - APECO1_254 - putative head-tail joining protein of prophage 1052 55.79 +1 1206739..1207317 + 192 117623358 - APECO1_255 - putative tail fiber component Z of prophage 1053 53.28 0 1207314..1207709 + 131 117623359 - APECO1_256 - putative tail component of prophage 1054 57.59 +1 1207687..1208457 + 256 117623360 - APECO1_257 - putative tail component of prophage CP-933X 1055 54.14 0 1208473..1208895 + 140 117623361 - APECO1_258 - putative tail component of prophage 1056 55.17 0 1208877..1209311 + 144 117623362 - APECO1_259 - putative tail component of prophage 1057 58.08 +1 1209304..1211865 + 853 117623363 - APECO1_260 - putative tail component of prophage 1058 58.18 +1 1211862..1212191 + 109 117623364 - APECO1_261 - minor tail protein 1059 54.94 0 1212191..1212889 + 232 117623365 - APECO1_262 - putative tail component of prophage 1060 59.95 +1 1212895..1213638 + 247 117623366 - APECO1_263 - putative tail fiber component K of prophage 1061 59.38 +1 1213536..1214207 + 223 117623367 - APECO1_265 - putative tail component of prophage 1062 57.47 +1 1214268..1217018 + 916 117623368 - APECO1_266 - putative tail component of prophage 1063 48.88 0 1216993..1217751 + 252 117623369 - APECO1_267 - putative tail component of prophage 1064 47.75 0 1217804..1219870 + 688 117623370 - APECO1_268 - hypothetical protein 1065 42.65 -1 1219867..1220145 + 92 117623371 - APECO1_269 - hypothetical protein 1066 53.06 0 1220158..1220451 + 97 117623372 - APECO1_270 - hypothetical protein 1067 49.30 0 1220543..1221400 - 285 117623373 sitD APECO1_271 - ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD 1068 52.10 0 1221397..1222254 - 285 117623374 sitC APECO1_272 - ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC 1069 51.21 0 1222251..1223078 - 275 117623375 sitB APECO1_273 - ABC Mn+2/Fe+2 transporter, ATPase subunit SitB 1070 48.42 0 1223078..1223992 - 304 117623376 sitA APECO1_274 - ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein 1071 34.11 -2 1224679..1225449 + 256 117623377 - APECO1_275 - hypothetical protein 1072 37.04 -2 1226335..1226739 - 134 117623378 ycgX APECO1_276 - hypothetical protein 1073 48.22 0 1226960..1227691 - 243 117623379 ycgE APECO1_277 - putative transcriptional regulator 1074 43.07 -1 1227896..1229107 - 403 117623380 ycgF APECO1_278 - hypothetical protein 1075 36.26 -2 1229700..1229972 + 90 117623381 - APECO1_279 - hypothetical protein 1076 34.46 -2 1230001..1230267 + 88 117623382 ymgB APECO1_280 - hypothetical protein 1077 43.89 -1 1231100..1231819 + 239 117623383 - APECO1_281 - hypothetical protein 1078 36.24 -2 1233036..1233413 + 125 117623384 - APECO1_282 - hypothetical protein 1079 48.86 0 1233559..1234086 + 175 117623385 - APECO1_283 - hypothetical protein 1080 44.35 -1 1234144..1234479 - 111 117623386 - APECO1_284 - hypothetical protein 1081 52.98 0 1234483..1234767 - 94 117623387 - APECO1_285 - hypothetical protein 1082 50.15 0 1235420..1235746 + 108 117623388 - APECO1_286 - hypothetical protein 1083 42.70 -1 1236119..1236385 - 88 117623389 minE APECO1_287 - cell division topological specificity factor MinE 1084 49.69 0 1236389..1237201 - 270 117623390 minD APECO1_288 - cell division inhibitor MinD 1085 50.72 0 1237225..1237920 - 231 117623391 minC APECO1_289 - septum formation inhibitor 1086 41.73 -1 1238440..1238808 + 122 117623392 ycgJ APECO1_290 - hypothetical protein 1087 42.79 -1 1238928..1239329 - 133 117623393 ycgK APECO1_291 - hypothetical protein 1088 43.12 -1 1239538..1239864 + 108 117623394 - APECO1_292 - hypothetical protein 50.94 MEAN 4.72 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0