IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.53   STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
679	 44.80	-1	735206..735964	-	252	110640893	-	ECP_0694	-	putative integral membrane transport protein
680	 51.91	0	736024..736911	-	295	110640894	-	ECP_0695	-	putative dihydrodipicolinate synthase protein
681	 55.18	0	736915..738072	-	385	110640895	-	ECP_0696	-	putative iron-containing alcohol dehydrogenase
682	 54.69	0	738242..739477	+	411	110640896	-	ECP_0697	-	putative inner membrane protein
683	 51.87	0	739470..740456	+	328	110640897	pdxA	ECP_0698	-	4-hydroxythreonine-4-phosphate dehydrogenase 2
684	 50.26	0	740458..741219	+	253	110640898	-	ECP_0699	-	DeoR family transcriptional regulator
685	 52.97	0	741439..743103	+	554	110640899	-	ECP_0700	-	glutaminyl-tRNA synthetase
686	 51.17	0	743544..744950	+	468	110640900	-	ECP_0701	-	outer membrane protein YbfM
687	 49.24	0	745000..745326	+	108	110640901	-	ECP_0702	-	lipoprotein YbfN precursor
688	 48.32	0	745410..745856	-	148	110640902	fur	ECP_0703	-	ferric uptake regulator
689	 39.61	-2	745901..746155	+	84	110640903	-	ECP_0704	-	hypothetical protein
690	 48.78	0	746145..746675	-	176	110640904	-	ECP_0705	-	flavodoxin FldA
691	 53.99	0	746815..747177	-	120	110640905	-	ECP_0706	-	LexA regulated protein
692	 50.33	0	747248..748012	-	254	110640906	-	ECP_0707	-	hypothetical protein
693	 49.63	0	748197..748742	+	181	110640907	-	ECP_0708	-	replication initiation regulator SeqA
694	 54.54	0	748768..750408	+	546	110640908	-	ECP_0709	-	phosphoglucomutase
695	 50.98	0	750465..751784	-	439	110640909	-	ECP_0710	-	putrescine transporter
696	 48.96	0	751781..753988	-	735	110640910	-	ECP_0711	-	ornithine decarboxylase
697	 56.93	+1	754668..755345	-	225	110640911	-	ECP_0712	-	DNA-binding transcriptional activator KdpE
698	 54.62	0	758020..758592	-	190	110640912	-	ECP_0715	-	potassium-transporting ATPase subunit C
699	 55.88	+1	758601..760649	-	682	110640913	-	ECP_0716	-	potassium-transporting ATPase subunit B
700	 54.96	0	760672..762345	-	557	110640914	-	ECP_0717	-	potassium-transporting ATPase subunit A
701	 51.11	0	762345..762434	-	29	110640915	-	ECP_0718	-	hypothetical protein
702	 50.72	0	762747..762953	+	68	110640916	-	ECP_0719	-	hypothetical protein
703	 50.00	0	763054..763563	+	169	110640917	-	ECP_0720	-	hypothetical protein
704	 53.84	0	763560..764978	+	472	110640918	-	ECP_0721	-	deoxyribodipyrimidine photolyase
705	 51.82	0	765020..766501	-	493	110640919	-	ECP_0722	-	POT family transport protein YbgH
706	 53.63	0	766772..767515	+	247	110640920	-	ECP_0723	-	putative hydrolase-oxidase
707	 57.51	+1	767538..768323	+	261	110640921	-	ECP_0724	-	hypothetical protein
708	 55.95	+1	768202..769134	+	310	110640922	-	ECP_0725	-	hypothetical protein
709	 56.60	+1	769124..769858	+	244	110640923	-	ECP_0726	-	hypothetical protein
710	 52.53	0	769894..770685	+	263	110640924	-	ECP_0727	-	endonuclease VIII
711	 56.73	+1	770682..771728	-	348	110640925	-	ECP_0728	-	hypothetical protein
712	 45.05	-1	771880..771990	-	36	110640926	-	ECP_0729	-	hypothetical protein
713	 38.03	-2	772012..772245	-	77	110640927	-	ECP_0730	-	hypothetical protein
714	 50.23	0	772402..773685	-	427	110640928	gltA	ECP_0731	-	type II citrate synthase
715	 46.88	0	773667..773858	+	63	110640929	-	ECP_0732	-	hypothetical protein
716	 49.14	0	774379..774783	+	134	110640930	sdhC	ECP_0733	-	succinate dehydrogenase cytochrome b556 large membrane subunit
717	 50.86	0	774777..775124	+	115	110640931	sdhD	ECP_0734	-	succinate dehydrogenase cytochrome b556 small membrane subunit
718	 55.35	0	775124..776890	+	588	110640932	sdhA	ECP_0735	-	succinate dehydrogenase flavoprotein subunit
719	 51.32	0	776906..777622	+	238	110640933	sdhB	ECP_0736	-	succinate dehydrogenase iron-sulfur subunit
720	 55.46	0	777984..780785	+	933	110640934	kgd	ECP_0737	-	alpha-ketoglutarate decarboxylase
721	 55.42	0	780800..782017	+	405	110640935	-	ECP_0738	-	dihydrolipoamide acetyltransferase
722	 53.90	0	782111..783277	+	388	110640936	sucC	ECP_0739	-	succinyl-CoA synthetase subunit beta
723	 53.22	0	783277..784146	+	289	110640937	-	ECP_0740	-	succinyl-CoA synthetase subunit alpha
724	 44.71	-1	784386..785501	+	371	110640938	-	ECP_0741	-	hypothetical protein
725	 26.74	-2	785455..785727	+	90	110640939	-	ECP_0742	-	hypothetical protein
726	 52.45	0	786831..788399	+	522	110640940	-	ECP_0743	-	cytochrome D ubiquinol oxidase subunit I
727	 54.12	0	788415..789554	+	379	110640941	-	ECP_0744	-	cytochrome D ubiquinol oxidase subunit II
728	 52.63	0	789569..789682	+	37	110640942	-	ECP_0745	-	hypothetical protein
729	 50.34	0	789682..789975	+	97	110640943	-	ECP_0746	-	hypothetical protein
730	 48.64	0	790125..790529	+	134	110640944	-	ECP_0747	-	acyl-CoA thioester hydrolase YbgC
731	 50.15	0	790535..791218	+	227	110640945	-	ECP_0748	-	colicin uptake protein TolQ
732	 51.52	0	791222..791650	+	142	110640946	-	ECP_0749	-	colicin uptake protein TolR
733	 52.53	0	791715..792980	+	421	110640947	tolA	ECP_0750	-	cell envelope integrity inner membrane protein TolA
734	 53.21	0	793113..794405	+	430	110640948	tolB	ECP_0751	-	translocation protein TolB
735	 51.34	0	794440..794961	+	173	110640949	-	ECP_0752	-	peptidoglycan-associated outer membrane lipoprotein
736	 49.62	0	794971..795762	+	263	110640950	-	ECP_0753	-	hypothetical protein
737	 50.67	0	796908..797951	+	347	110640951	-	ECP_0761	-	quinolinate synthetase
738	 48.06	0	797989..798708	+	239	110640952	-	ECP_0762	-	intergral membrane NMN transport protein PnuC
739	 53.08	0	798705..799646	-	313	110640953	-	ECP_0763	-	zinc transporter ZitB
740	 50.66	0	799761..800141	-	126	110640954	-	ECP_0764	-	hypothetical protein
741	 52.33	0	800457..801509	+	350	110640955	-	ECP_0765	-	phospho-2-dehydro-3-deoxyheptonate aldolase
742	 51.79	0	801676..802428	-	250	110640956	-	ECP_0766	-	phosphoglycerate mutase
743	 55.33	0	802631..803671	-	346	110640957	galM	ECP_0767	-	aldose 1-epimerase
744	 52.74	0	803665..804813	-	382	110640958	-	ECP_0768	-	galactokinase
745	 55.40	0	804817..805863	-	348	110640959	-	ECP_0769	-	galactose-1-phosphate uridylyltransferase
746	 54.47	0	805873..806889	-	338	110640960	-	ECP_0770	-	UDP-galactose-4-epimerase
747	 52.21	0	807151..808623	-	490	110640961	-	ECP_0771	-	putative molybdenum transport ATP-binding protein ModF
748	 52.09	0	808691..809479	-	262	110640962	-	ECP_0772	-	DNA-binding transcriptional regulator ModE
749	 41.33	-1	809608..809757	+	49	110640963	-	ECP_0773	-	putative outer membrane or exported protein
750	 40.48	-1	809693..809902	+	69	110640964	-	ECP_0774	-	hypothetical protein
751	 51.16	0	809924..810697	+	257	110640965	modA	ECP_0775	-	molybdate transporter periplasmic protein
752	 53.48	0	810697..811386	+	229	110640966	modB	ECP_0776	-	molybdate ABC transporter permease protein
753	 53.07	0	811389..812447	+	352	110640967	modC	ECP_0777	-	molybdate transporter ATP-binding protein
754	 51.65	0	812448..813266	-	272	110640968	-	ECP_0778	-	phosphotransferase
755	 54.72	0	813421..814416	+	331	110640969	-	ECP_0779	-	6-phosphogluconolactonase
756	 47.17	0	814457..815215	-	252	110640970	-	ECP_0780	-	transcriptional regulator
757	 36.25	-2	815233..815472	-	79	110640971	-	ECP_0781	-	transcriptional regulator
758	 48.91	0	815593..816645	+	350	110640972	-	ECP_0782	-	hypothetical protein
759	 49.16	0	816721..818154	+	477	110640973	-	ECP_0783	-	putative membrane transport protein
760	 51.41	0	818337..820598	+	753	110640974	-	ECP_0784	-	hypothetical protein
761	 53.74	0	820739..822022	-	427	110640975	-	ECP_0785	-	putative pectinesterase
762	 52.41	0	822174..822650	-	158	110640976	-	ECP_0786	-	putative kinase inhibitor protein
763	 50.66	0	822759..823889	+	376	110640977	-	ECP_0787	-	putative virulence protein GipA
764	 55.17	0	824000..825400	-	466	110640978	-	ECP_0788	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
765	 55.43	0	825376..826416	+	346	110640979	-	ECP_0789	-	biotin synthase
766	 57.49	+1	826413..827567	+	384	110640980	-	ECP_0790	-	8-amino-7-oxononanoate synthase
767	 56.75	+1	827554..828309	+	251	110640981	-	ECP_0791	-	biotin biosynthesis protein BioC
768	 53.98	0	828302..828979	+	225	110640982	bioD	ECP_0792	-	dithiobiotin synthetase
769	 53.31	0	829558..831579	+	673	110640983	-	ECP_0793	-	excinuclease ABC subunit B
770	 52.15	0	831617..832525	-	302	110640984	-	ECP_0794	-	hypothetical protein
771	 53.18	0	832889..833911	+	340	110640985	moaA	ECP_0795	-	molybdenum cofactor biosynthesis protein A
772	 52.63	0	833933..834445	+	170	110640986	-	ECP_0796	-	molybdenum cofactor biosynthesis protein B
773	 56.17	+1	834448..834933	+	161	110640987	moaC	ECP_0797	-	molybdenum cofactor biosynthesis protein C
774	 56.10	+1	834926..835171	+	81	110640988	moaD	ECP_0798	-	molybdopterin synthase small subunit
775	 56.07	+1	835173..835625	+	150	110640989	MoaE	ECP_0799	-	molybdopterin synthase large subunit
776	 48.94	0	835762..836466	+	234	110640990	-	ECP_0800	-	hypothetical protein
777	 40.90	-1	836672..837385	+	237	110640991	-	ECP_0801	-	hypothetical protein
778	 52.25	0	837421..838377	-	318	110640992	-	ECP_0802	-	hypothetical protein
50.53	MEAN

5.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.