IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.53   STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
553	 52.94	0	595715..596530	+	271	110640767	-	ECP_0567	-	DNA-binding transcriptional repressor AllR
554	 52.97	0	596620..598401	+	593	110640768	-	ECP_0568	-	glyoxylate carboligase
555	 44.40	-1	598414..599190	+	258	110640769	-	ECP_0569	-	hydroxypyruvate isomerase
556	 50.74	0	599290..600168	+	292	110640770	-	ECP_0570	-	2-hydroxy-3-oxopropionate reductase
557	 47.29	0	600338..601792	+	484	110640771	-	ECP_0571	-	allantoin permease
558	 51.62	0	601852..603213	+	453	110640772	-	ECP_0572	-	allantoinase
559	 51.46	0	603269..604570	+	433	110640773	-	ECP_0573	-	putative purine permease YbbY
560	 55.93	+1	604592..605737	+	381	110640774	-	ECP_0574	-	glycerate kinase II
561	 46.06	0	605866..606651	-	261	110640775	-	ECP_0575	-	hypothetical protein
562	 51.70	0	606662..607897	-	411	110640776	-	ECP_0576	-	allantoate amidohydrolase
563	 52.38	0	607919..608968	-	349	110640777	-	ECP_0577	-	putative malate/L-lactate dehydrogenase
564	 55.52	0	609285..610952	+	555	110640778	-	ECP_0578	-	membrane protein FdrA
565	 57.38	+1	610962..612221	+	419	110640779	-	ECP_0579	-	hypothetical protein
566	 57.35	+1	612232..613047	+	271	110640780	-	ECP_0580	-	hypothetical protein
567	 57.38	+1	613044..613937	+	297	110640781	-	ECP_0581	-	carbamate kinase
568	 56.46	+1	614070..615137	-	355	110640782	-	ECP_0582	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
569	 58.24	+1	615134..615643	-	169	110640783	-	ECP_0583	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
570	 44.55	-1	615739..616068	-	109	110640784	-	ECP_0584	-	hypothetical protein
571	 53.94	0	616180..616902	-	240	110640785	-	ECP_0585	-	UDP-2,3-diacylglucosamine hydrolase
572	 47.68	0	616905..617399	-	164	110640786	-	ECP_0586	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
573	 54.40	0	617573..618958	+	461	110640787	cysS	ECP_0587	-	cysteinyl-tRNA synthetase
574	 52.68	0	618994..619515	-	173	110640788	-	ECP_0588	-	membrane-bound metal-dependent hydrolase
575	 53.99	0	619623..619835	-	70	110640789	-	ECP_0589	-	hypothetical protein
576	 54.67	0	619837..620703	-	288	110640790	-	ECP_0590	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
577	 45.96	0	620744..620941	+	65	110640791	-	ECP_0591	-	hypothetical protein
578	 46.93	0	621058..621366	-	102	110640792	-	ECP_0593	-	putative DNA integration/recombination/invertion protein
579	 46.67	0	621386..621685	-	99	110640793	-	ECP_0594	-	putative DNA integration/recombination/invertion protein
580	 49.18	0	621739..621921	+	60	110640794	-	ECP_0595	-	part of the phage tail assembly protein
581	 41.40	-1	622098..622754	-	218	110640795	-	ECP_0596	-	hypothetical protein
582	 43.50	-1	622998..623951	-	317	110640796	-	ECP_0597	-	outer membrane protease
583	 51.85	0	624610..625500	-	296	110640797	-	ECP_0598	-	hypothetical protein
584	 55.23	0	625501..628473	-	990	110640798	-	ECP_0599	-	bacteriophage N4 receptor, outer membrane subunit
585	 52.23	0	628460..630697	-	745	110640799	nfrB	ECP_0600	-	bacteriophage N4 adsorption protein B
586	 51.77	0	630847..632289	-	480	110640800	-	ECP_0601	-	sensor kinase CusS
587	 54.24	0	632279..632962	-	227	110640801	-	ECP_0602	-	DNA-binding transcriptional activator CusR
588	 51.55	0	633119..634501	+	460	110640802	-	ECP_0603	-	copper/silver efflux system outer membrane protein CusC
589	 43.84	-1	634525..634857	+	110	110640803	-	ECP_0604	-	periplasmic copper-binding protein
590	 56.05	+1	634873..636096	+	407	110640804	-	ECP_0605	-	copper/silver efflux system membrane fusion protein CusB
591	 55.60	0	636108..639251	+	1047	110640805	-	ECP_0606	-	putative cation efflux system protein CusA
592	 52.42	0	639353..640735	+	460	110640806	-	ECP_0607	-	phenylalanine transporter
593	 47.76	0	640893..642140	-	415	110640807	-	ECP_0608	-	transporter
594	 51.53	0	642248..642901	-	217	110640808	-	ECP_0609	-	dihydropteridine reductase
595	 47.92	0	642980..643363	-	127	110640809	-	ECP_0610	-	hypothetical protein
596	 51.00	0	643428..643676	-	82	110640810	-	ECP_0611	-	putative membrane protein YbdJ
597	 51.39	0	643742..644860	-	372	110640811	-	ECP_0612	-	carboxylate-amine ligase
598	 46.03	0	645269..645457	+	62	110640812	-	ECP_0613	-	hypothetical protein
599	 48.41	0	645579..646208	-	209	110640813	-	ECP_0614	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
600	 53.87	0	646374..648623	-	749	110640814	-	ECP_0615	-	outer membrane receptor FepA
601	 55.11	0	648865..650067	+	400	110640815	-	ECP_0616	-	enterobactin/ferric enterobactin esterase
602	 57.08	+1	650070..650288	+	72	110640816	-	ECP_0617	-	MbtH-like protein
603	 56.18	+1	650285..654166	+	1293	110640817	entF	ECP_0618	-	enterobactin synthase subunit F
604	 44.80	-1	654382..655515	+	377	110640818	-	ECP_0619	-	ferric enterobactin transport protein FepE
605	 54.53	0	655512..656327	-	271	110640819	-	ECP_0620	-	iron-enterobactin transporter ATP-binding protein
606	 57.70	+1	656324..657316	-	330	110640820	-	ECP_0621	-	iron-enterobactin transporter permease
607	 60.18	+1	657313..658329	-	338	110640821	-	ECP_0622	-	iron-enterobactin transporter membrane protein
608	 57.79	+1	658428..659678	+	416	110640822	-	ECP_0623	-	enterobactin exporter EntS
609	 55.49	0	659682..660638	-	318	110640823	-	ECP_0624	-	iron-enterobactin transporter periplasmic binding protein
610	 55.36	0	660827..662002	+	391	110640824	-	ECP_0625	-	isochorismate synthase
611	 56.55	+1	662012..663622	+	536	110640825	entE	ECP_0626	-	enterobactin synthase subunit E
612	 55.48	0	663636..664493	+	285	110640826	-	ECP_0627	-	isochorismatase
613	 57.43	+1	664493..665239	+	248	110640827	-	ECP_0628	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
614	 58.45	+1	665242..665655	+	137	110640828	-	ECP_0629	-	hypothetical protein
615	 57.31	+1	665836..667941	+	701	110640829	-	ECP_0630	-	carbon starvation protein A
616	 51.01	0	668053..668250	+	65	110640830	-	ECP_0631	-	hypothetical protein
617	 55.37	0	668260..669348	-	362	110640831	-	ECP_0632	-	hypothetical protein
618	 54.44	0	669457..670617	+	386	110640832	-	ECP_0633	-	putative aminotransferase
619	 46.35	0	670618..671247	-	209	110640833	-	ECP_0634	-	hypothetical protein
620	 46.44	0	671220..672440	-	406	110640834	-	ECP_0635	-	hypothetical protein
621	 37.10	-2	672587..673489	-	300	110640835	-	ECP_0636	-	transcriptional regulator YbdO
622	 46.45	0	673694..674440	-	248	110640836	dsbG	ECP_0637	-	disulfide isomerase/thiol-disulfide oxidase
623	 49.65	0	674812..675375	+	187	110640837	-	ECP_0638	-	alkyl hydroperoxide reductase subunit C
624	 52.44	0	675516..677111	+	531	110640838	-	ECP_0639	-	alkyl hydroperoxide reductase subunit F
625	 48.48	0	677232..677660	-	142	110640839	-	ECP_0640	-	putative universal stress protein
626	 54.99	0	678016..678426	-	136	110640840	-	ECP_0641	-	nucleoside diphosphate kinase regulator
627	 51.15	0	678656..679480	-	274	110640841	-	ECP_0642	-	ribonuclease I
628	 51.02	0	679576..681039	-	487	110640842	-	ECP_0643	-	citrate/succinate antiporter
629	 55.52	0	681090..681968	-	292	110640843	citG	ECP_0644	-	triphosphoribosyl-dephospho-CoA synthase
630	 58.51	+1	681943..682494	-	183	110640844	citX	ECP_0645	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
631	 56.36	+1	682498..684030	-	510	110640845	-	ECP_0646	-	citrate lyase alpha chain
632	 57.10	+1	684041..684949	-	302	110640846	-	ECP_0647	-	citrate lyase beta chain
633	 56.23	+1	684946..685242	-	98	110640847	-	ECP_0648	-	citrate lyase subunit gamma
634	 50.99	0	685257..686315	-	352	110640848	-	ECP_0649	-	putative citrate lyase synthetase
635	 49.73	0	686695..688353	+	552	110640849	-	ECP_0650	-	sensor kinase DpiB
636	 50.95	0	688322..689002	+	226	110640850	-	ECP_0651	-	two-component response regulator DpiA
637	 50.87	0	689043..690428	-	461	110640851	dcuC	ECP_0652	-	C4-dicarboxylate transporter DcuC
638	 45.99	0	691015..691575	+	186	110640852	-	ECP_0653	-	palmitoyl transferase for Lipid A
639	 43.81	-1	691750..691959	+	69	110640853	cspE	ECP_0654	-	cold shock protein CspE
640	 48.96	0	692013..692396	-	127	110640854	-	ECP_0655	-	protein CrcB
641	 53.36	0	692492..693280	+	262	110640855	-	ECP_0656	-	hypothetical protein
642	 50.00	0	693409..693612	+	67	110640856	tatE	ECP_0657	-	twin arginine translocase protein E
643	 53.42	0	693712..694677	-	321	110640857	-	ECP_0658	-	lipoyl synthase
644	 52.38	0	694909..695097	-	62	110640858	-	ECP_0659	-	hypothetical protein
645	 47.66	0	695497..696138	-	213	110640859	lipB	ECP_0660	-	lipoyltransferase
646	 46.21	0	696239..696502	-	87	110640860	-	ECP_0661	-	hypothetical protein
647	 50.00	0	696612..697823	-	403	110640861	-	ECP_0662	-	D-alanyl-D-alanine carboxypeptidase fraction A
648	 57.58	+1	697963..699051	-	362	110640862	-	ECP_0663	-	rare lipoprotein A
649	 51.57	0	699062..700174	-	370	110640863	-	ECP_0664	-	cell wall shape-determining protein
650	 52.68	0	700177..702078	-	633	110640864	-	ECP_0665	-	penicillin-binding protein 2
651	 58.12	+1	702109..702576	-	155	110640865	-	ECP_0666	-	SPOUT methyltransferase superfamily protein
652	 51.26	0	702580..702897	-	105	110640866	-	ECP_0667	-	hypothetical protein
50.53	MEAN

5.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.