IslandPathversion 1.0

IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.53 STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3918	 56.35	+1	4180058..4180774	+	238	110644137	-	ECP_4006	-	flavin mononucleotide phosphatase
3919	 57.70	+1	4180858..4183020	+	720	110644138	uvrD	ECP_4007	-	DNA-dependent helicase II
3920	 47.84	0	4183065..4183967	-	300	110644139	-	ECP_4008	-	hypothetical protein
3921	 47.19	0	4184050..4184814	-	254	110644140	-	ECP_4009	-	hypothetical protein
3922	 53.21	0	4185184..4186134	+	316	110644141	-	ECP_4010	-	magnesium/nickel/cobalt transporter CorA
3923	 33.53	-2	4186170..4186667	-	165	110644142	-	ECP_4011	-	hypothetical protein
3924	 32.86	-2	4186664..4187512	-	282	110644143	-	ECP_4012	-	hypothetical protein
3925	 50.62	0	4187822..4188712	-	296	110644144	-	ECP_4013	-	hypothetical protein
3926	 53.21	0	4188764..4189231	-	155	110644145	-	ECP_4014	-	hypothetical protein
3927	 52.07	0	4189395..4190264	+	289	110644146	-	ECP_4015	-	phospholipase A
3928	 54.15	0	4190389..4192218	+	609	110644147	-	ECP_4016	-	ATP-dependent DNA helicase RecQ
3929	 51.21	0	4192282..4192902	+	206	110644148	-	ECP_4017	-	threonine efflux system
3930	 52.17	0	4192963..4193583	-	206	110644149	rhtB	ECP_4018	-	homoserine/homoserine lactone efflux protein
3931	 53.27	0	4193694..4194716	+	340	110644150	-	ECP_4019	-	lysophospholipase L2
3932	 51.69	0	4194724..4195524	+	266	110644151	-	ECP_4020	-	putative sugar phosphatase
3933	 55.33	0	4195600..4196499	+	299	110644152	-	ECP_4021	-	hypothetical protein
3934	 56.39	+1	4196387..4197340	-	317	110644153	-	ECP_4022	-	LysR family transcriptional regulator
3935	 55.22	0	4197458..4199719	+	753	110644154	-	ECP_4023	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
3936	 37.40	-2	4199888..4200133	-	81	110644155	-	ECP_4024	-	hypothetical protein
3937	 39.53	-2	4200208..4200465	-	85	110644156	-	ECP_4025	-	hypothetical protein
3938	 40.04	-2	4200462..4201595	-	377	110644157	-	ECP_4026	-	hypothetical protein
3939	 50.90	0	4202080..4202637	+	185	110644158	-	ECP_4027	-	hypothetical protein
3940	 49.24	0	4202679..4204187	+	502	110644159	-	ECP_4028	-	PTS system, glucose-specific IIBC component
3941	 54.60	0	4204238..4206235	+	665	110644160	-	ECP_4029	-	transketolase
3942	 41.02	-1	4206265..4207110	-	281	110644161	-	ECP_4030	-	putative transcriptional regulator
3943	 46.14	0	4207311..4208216	-	301	110644162	-	ECP_4031	-	LysR family transcriptional regulator
3944	 51.47	0	4208294..4209517	-	407	110644163	-	ECP_4032	-	putative permease
3945	 51.28	0	4209543..4209932	-	129	110644164	-	ECP_4033	-	hypothetical protein
3946	 54.65	0	4209949..4210905	-	318	110644165	-	ECP_4034	-	carbamate kinase
3947	 53.96	0	4210898..4212322	-	474	110644166	-	ECP_4035	-	hypothetical protein
3948	 52.24	0	4212319..4213878	-	519	110644167	-	ECP_4036	-	YahF/FdrA-like protein
3949	 49.94	0	4213973..4214833	-	286	110644168	-	ECP_4037	-	hypothetical protein
3950	 49.93	0	4214839..4215507	-	222	110644169	-	ECP_4038	-	isochorismatase family protein YcdL
3951	 54.20	0	4215764..4216573	-	269	110644170	-	ECP_4039	-	putative carboxymethylenebutenolidase
3952	 54.12	0	4216835..4217599	+	254	110644171	-	ECP_4040	-	uridine phosphorylase
3953	 51.24	0	4217634..4219124	-	496	110644172	-	ECP_4041	-	integral membrane protein
3954	 51.08	0	4219137..4219643	-	168	110644173	-	ECP_4042	-	hypothetical protein
3955	 52.82	0	4219660..4220634	-	324	110644174	-	ECP_4043	-	hypothetical protein
3956	 53.97	0	4220659..4221288	-	209	110644175	-	ECP_4044	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
3957	 53.13	0	4221278..4222282	-	334	110644176	-	ECP_4045	-	2-oxo-3-deoxygalactonate kinase
3958	 54.04	0	4222306..4223073	-	255	110644177	-	ECP_4046	-	putative transcriptional regulator
3959	 52.52	0	4223290..4224717	+	475	110644178	-	ECP_4047	-	DNA recombination protein RmuC
3960	 51.98	0	4224812..4225567	+	251	110644179	ubiE	ECP_4048	-	ubiquinone/menaquinone biosynthesis methyltransferase
3961	 56.11	+1	4225581..4226186	+	201	110644180	-	ECP_4049	-	hypothetical protein
3962	 49.97	0	4226183..4227823	+	546	110644181	ubiB	ECP_4050	-	putative ubiquinone biosynthesis protein UbiB
3963	 46.30	0	4227902..4228171	+	89	110644182	tatA	ECP_4051	-	twin argininte translocase protein A
3964	 54.46	0	4228175..4228690	+	171	110644183	-	ECP_4052	-	sec-independent translocase
3965	 51.61	0	4228693..4229469	+	258	110644184	-	ECP_4053	-	TatABCE protein translocation system subunit
3966	 54.47	0	4229499..4230293	+	264	110644185	-	ECP_4054	-	DNase TatD
3967	 49.28	0	4230290..4230778	-	162	110644186	rfaH	ECP_4055	-	transcriptional activator RfaH
3968	 53.44	0	4230945..4232441	+	498	110644187	-	ECP_4056	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3969	 52.28	0	4232487..4233188	+	233	110644188	fre	ECP_4057	-	FMN reductase
3970	 57.56	+1	4233470..4234633	-	387	110644189	fadA	ECP_4058	-	3-ketoacyl-CoA thiolase
3971	 55.02	0	4234643..4236832	-	729	110644190	fadB	ECP_4059	-	multifunctional fatty acid oxidation complex subunit alpha
3972	 53.15	0	4237022..4238353	+	443	110644191	-	ECP_4060	-	proline dipeptidase
3973	 55.34	0	4238350..4238967	+	205	110644192	-	ECP_4061	-	hypothetical protein
3974	 53.03	0	4239006..4240457	+	483	110644193	-	ECP_4062	-	potassium transporter
3975	 52.01	0	4240469..4241014	+	181	110644194	hemG	ECP_4063	-	protoporphyrinogen oxidase
3976	 49.24	0	4246599..4247126	-	175	110644195	-	ECP_4066	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3977	 50.52	0	4247108..4247683	-	191	110644196	mobA	ECP_4067	-	molybdopterin-guanine dinucleotide biosynthesis protein A
3978	 44.81	-1	4247762..4248031	+	89	110644197	-	ECP_4068	-	hypothetical protein
3979	 48.43	0	4248108..4249094	+	328	110644198	-	ECP_4069	-	serine/threonine protein kinase
3980	 47.69	0	4249111..4249737	+	208	110644199	-	ECP_4070	-	periplasmic protein disulfide isomerase I
3981	 41.86	-1	4249892..4251322	+	476	110644200	-	ECP_4071	-	hypothetical protein
3982	 45.34	0	4251363..4252295	-	310	110644201	-	ECP_4072	-	hypothetical protein
3983	 31.18	-2	4252415..4252600	-	61	110644202	-	ECP_4073	-	hypothetical protein
3984	 51.99	0	4252659..4255445	+	928	110644203	-	ECP_4074	-	DNA polymerase I
3985	 53.70	0	4255827..4256420	-	197	110644204	-	ECP_4075	-	GTP-binding protein EngB
3986	 52.55	0	4257042..4257551	+	169	110644205	-	ECP_4076	-	hypothetical protein
3987	 53.06	0	4257740..4259113	+	457	110644206	-	ECP_4077	-	coproporphyrinogen III oxidase
3988	 51.35	0	4259346..4259456	-	36	110644207	-	ECP_4078	-	hypothetical protein
3989	 56.52	+1	4259568..4260977	-	469	110644208	glnG	ECP_4079	-	nitrogen regulation protein NR(I)
3990	 55.05	0	4260989..4262038	-	349	110644209	glnL	ECP_4080	-	nitrogen regulation protein NR(II)
3991	 53.12	0	4262212..4263621	-	469	110644210	glnA	ECP_4081	-	glutamine synthetase
3992	 53.40	0	4263994..4265817	+	607	110644211	-	ECP_4082	-	GTP-binding protein
3993	 48.52	0	4266034..4266744	+	236	110644212	-	ECP_4083	-	transcriptional regulator YihL
3994	 43.02	-1	4266752..4267732	+	326	110644213	-	ECP_4084	-	hypothetical protein
3995	 45.66	0	4267834..4269099	+	421	110644214	-	ECP_4085	-	putative membrane protein YihN
3996	 49.68	0	4269159..4269947	-	262	110644215	-	ECP_4086	-	transcriptional regulator YihW
3997	 50.84	0	4269987..4270883	-	298	110644216	-	ECP_4087	-	sugar kinase YihV
3998	 51.65	0	4271056..4271934	+	292	110644217	-	ECP_4088	-	oxidoreductase YihU
3999	 52.36	0	4271959..4272846	+	295	110644218	-	ECP_4089	-	hypothetical protein
4000	 53.31	0	4272879..4273889	+	336	110644219	-	ECP_4090	-	putative dehydrogenase
4001	 49.72	0	4273959..4275392	+	477	110644220	-	ECP_4091	-	hypothetical protein
4002	 46.30	0	4275491..4276840	+	449	110644221	-	ECP_4092	-	putative transmembrane transport protein
4003	 49.66	0	4276830..4277717	+	295	110644222	-	ECP_4093	-	putative aldose-1-epimerase
4004	 50.00	0	4277858..4278457	+	199	110644223	-	ECP_4094	-	phosphatase
4005	 51.09	0	4278451..4279323	+	290	110644224	rbn	ECP_4095	-	ribonuclease BN
4006	 55.02	0	4279320..4279757	+	145	110644225	-	ECP_4096	-	D-tyrosyl-tRNA deacylase
4007	 54.75	0	4279754..4280743	+	329	110644226	-	ECP_4097	-	putative acetyltransferase
4008	 52.44	0	4280807..4281727	-	306	110644227	-	ECP_4098	-	acetyl-hydrolase
4009	 40.74	-1	4282094..4282255	+	53	110644228	-	ECP_4099	-	hypothetical protein
4010	 48.80	0	4282256..4282546	+	96	110644229	-	ECP_4100	-	hypothetical protein
4011	 35.12	-2	4282954..4283121	-	55	110644230	-	ECP_4101	-	hypothetical protein
4012	 46.58	0	4283151..4283369	+	72	110644231	-	ECP_4102	-	hypothetical protein
4013	 55.48	0	4283584..4284513	-	309	110644232	-	ECP_4103	-	formate dehydrogenase accessory protein FdhE
4014	 52.67	0	4284510..4285145	-	211	110644233	-	ECP_4104	-	formate dehydrogenase-O subunit gamma
4015	 55.81	+1	4285142..4286044	-	300	110644234	-	ECP_4105	-	formate dehydrogenase-O, iron-sulfur subunit
4016	 52.76	0	4289301..4290134	+	277	110644235	-	ECP_4108	-	formate dehydrogenase accessory protein
4017	 42.23	-1	4290184..4290846	+	220	110644236	-	ECP_4109	-	hypothetical protein
50.53	MEAN

5.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.