IslandPathversion 1.0

IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.53 STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2720	 49.00	0	2918755..2919603	+	282	110642936	queF	ECP_2776	-	7-cyano-7-deazaguanine reductase
2721	 51.28	0	2919715..2921079	+	454	110642937	-	ECP_2777	-	hypothetical protein
2722	 52.33	0	2921636..2922925	+	429	110642938	-	ECP_2778	-	serine transporter
2723	 52.51	0	2924463..2925218	+	251	110642939	xni	ECP_2781	-	exonuclease IX
2724	 53.65	0	2925323..2926474	-	383	110642940	-	ECP_2782	-	L-1,2-propanediol oxidoreductase
2725	 49.69	0	2926499..2927146	-	215	110642941	-	ECP_2783	-	L-fuculose phosphate aldolase
2726	 47.53	0	2927693..2929009	+	438	110642942	-	ECP_2784	-	L-fucose transporter
2727	 54.45	0	2929042..2930817	+	591	110642943	fucI	ECP_2785	-	L-fucose isomerase
2728	 50.38	0	2930896..2932344	+	482	110642944	-	ECP_2786	-	L-fuculokinase
2729	 48.94	0	2932346..2932768	+	140	110642945	-	ECP_2787	-	fucose operon FucU protein
2730	 47.64	0	2932944..2933558	+	204	110642946	-	ECP_2788	-	DNA-binding transcriptional activator
2731	 51.95	0	2933602..2934702	-	366	110642947	-	ECP_2789	-	putative RNA 2'-O-ribose methyltransferase
2732	 54.29	0	2934695..2935090	-	131	110642948	-	ECP_2790	-	hypothetical protein
2733	 49.67	0	2935109..2936026	-	305	110642949	-	ECP_2791	-	DNA-binding transcriptional activator GcvA
2734	 46.93	0	2936377..2936604	-	75	110642950	-	ECP_2792	-	putative lipoprotein
2735	 55.89	+1	2936796..2938001	+	401	110642951	-	ECP_2793	-	cysteine sulfinate desulfinase
2736	 55.18	0	2938001..2938444	+	147	110642952	-	ECP_2794	-	hypothetical protein
2737	 55.02	0	2938495..2939301	-	268	110642953	-	ECP_2795	-	hypothetical protein
2738	 52.55	0	2939378..2940475	-	365	162138277	mltA	ECP_2796	-	murein transglycosylase A
2739	 44.71	-1	2941612..2942112	+	166	110642955	-	ECP_2800	-	putative cytoplasmic protein
2740	 51.07	0	2942171..2943709	+	512	110642956	-	ECP_2801	-	putative cytoplasmic protein
2741	 59.49	+1	2943727..2945064	+	445	110642957	-	ECP_2802	-	hypothetical protein
2742	 59.01	+1	2945061..2945726	+	221	110642958	-	ECP_2803	-	hypothetical protein
2743	 61.28	+2	2945739..2947391	+	550	110642959	-	ECP_2804	-	OmpA family membrane protein
2744	 51.42	0	2947449..2947940	+	163	110642960	-	ECP_2805	-	hemolysin-coregulated protein Hcp
2745	 60.75	+1	2948132..2950768	+	878	110642961	-	ECP_2806	-	putative CLPA/B-type chaperone protein
2746	 56.67	+1	2950780..2953269	+	829	110642962	-	ECP_2807	-	putative VGR-related protein
2747	 40.66	-1	2953335..2954153	+	272	110642963	-	ECP_2808	-	putative transmembrane protein
2748	 35.69	-2	2954167..2954760	+	197	110642964	-	ECP_2809	-	hypothetical protein
2749	 55.87	+1	2954805..2957324	+	839	110642965	-	ECP_2810	-	putative VGR-related protein
2750	 33.46	-2	2957317..2958105	+	262	110642966	-	ECP_2811	-	hypothetical protein
2751	 30.94	-2	2958190..2959110	+	306	110642967	-	ECP_2812	-	hypothetical protein
2752	 55.97	+1	2959367..2960581	+	404	110642968	-	ECP_2813	-	hypothetical protein
2753	 60.75	+1	2960533..2963964	+	1143	110642969	-	ECP_2814	-	hypothetical protein
2754	 61.17	+2	2963930..2965567	+	545	110642970	-	ECP_2815	-	hypothetical protein
2755	 41.09	-1	2965573..2967003	+	476	110642971	-	ECP_2816	-	hypothetical protein
2756	 30.62	-2	2966996..2967400	+	134	110642972	-	ECP_2817	-	hypothetical protein
2757	 57.55	+1	2967475..2967792	+	105	110642973	-	ECP_2818	-	hypothetical protein
2758	 56.99	+1	2967749..2969236	+	495	110642974	-	ECP_2819	-	hypothetical protein
2759	 59.07	+1	2969200..2970279	+	359	110642975	-	ECP_2820	-	hypothetical protein
2760	 51.21	0	2970260..2970796	+	178	110642976	-	ECP_2821	-	hypothetical protein
2761	 53.61	0	2970800..2971228	+	142	110642977	-	ECP_2822	-	hypothetical protein
2762	 55.27	0	2971228..2972604	+	458	110642978	-	ECP_2823	-	hypothetical protein
2763	 44.41	-1	2972904..2973851	-	315	110642979	-	ECP_2824	-	2-hydroxyacid dehydrogenase
2764	 41.04	-1	2973923..2974519	-	198	110642980	-	ECP_2825	-	posphosugar isomerase
2765	 37.50	-2	2974522..2975697	-	391	110642981	-	ECP_2826	-	putative aminotransferase
2766	 44.31	-1	2975697..2977226	-	509	110642982	-	ECP_2827	-	PTS system, maltose and glucose-specific IIABC component
2767	 33.82	-2	2977309..2978133	-	274	110642983	-	ECP_2828	-	putative transcriptional antiterminator protein
2768	 53.67	0	2978391..2979644	-	417	110642984	-	ECP_2829	-	putative amidase
2769	 52.40	0	2979876..2981207	+	443	110642985	-	ECP_2830	-	N-acetylglutamate synthase
2770	 54.90	0	2981289..2983115	-	608	110642986	RecD	ECP_2831	-	exonuclease V subunit alpha
2771	 54.36	0	2983115..2986657	-	1180	110642987	RecB	ECP_2832	-	exonuclease V subunit beta
2772	 50.78	0	2986650..2989538	-	962	110642988	-	ECP_2833	-	protease III
2773	 53.31	0	2989714..2993082	-	1122	110642989	recC	ECP_2834	-	exonuclease V subunit gamma
2774	 54.63	0	2993095..2993418	-	107	110642990	-	ECP_2835	-	hypothetical protein
2775	 53.19	0	2993403..2993810	-	135	110642991	-	ECP_2836	-	hypothetical protein
2776	 53.86	0	2993807..2994610	-	267	110642992	-	ECP_2837	-	hypothetical protein
2777	 54.35	0	2994361..2994831	-	156	110642993	-	ECP_2838	-	hypothetical protein
2778	 51.19	0	2995016..2995810	-	264	110642995	thyA	ECP_2840	-	thymidylate synthase
2779	 52.63	0	2995817..2996692	-	291	110642996	-	ECP_2841	-	prolipoprotein diacylglyceryl transferase
2780	 53.72	0	2996843..2999089	-	748	110642997	-	ECP_2842	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein
2781	 49.15	0	2999102..2999632	-	176	110642998	-	ECP_2843	-	dinucleoside polyphosphate hydrolase
2782	 53.33	0	3000317..3001006	+	229	110642999	-	ECP_2844	-	DNA mismatch repair protein
2783	 51.12	0	3001075..3001788	+	237	110643000	-	ECP_2845	-	putative integral membrane transport protein
2784	 43.38	-1	3001926..3002144	+	72	110643001	-	ECP_2846	-	putative lipoprotein
2785	 54.47	0	3002252..3003292	+	346	110643002	-	ECP_2847	-	putative aldo-keto reductase
2786	 55.11	0	3003324..3004517	-	397	110643003	-	ECP_2848	-	hypothetical protein
2787	 52.36	0	3004510..3006669	-	719	110643004	-	ECP_2849	-	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase
2788	 53.00	0	3007255..3008286	+	343	110643005	-	ECP_2850	-	DNA-binding transcriptional regulator GalR
2789	 52.65	0	3008293..3009555	-	420	110643006	-	ECP_2851	-	diaminopimelate decarboxylase
2790	 53.53	0	3009677..3010612	+	311	110643007	-	ECP_2852	-	DNA-binding transcriptional regulator LysR
2791	 50.22	0	3010599..3011291	-	230	110643008	-	ECP_2853	-	putative racemase
2792	 51.44	0	3011420..3012838	-	472	110643009	-	ECP_2854	-	arabinose-proton symporter
2793	 51.97	0	3013153..3013914	-	253	110643010	-	ECP_2855	-	2-deoxy-D-gluconate 3-dehydrogenase
2794	 49.70	0	3013944..3014780	-	278	110643011	-	ECP_2856	-	5-keto-4-deoxyuronate isomerase
2795	 53.13	0	3015067..3016248	-	393	110643012	-	ECP_2857	-	acetyl-CoA acetyltransferase
2796	 44.39	-1	3016503..3017732	+	409	110643013	-	ECP_2858	-	transport protein YqeG
2797	 50.53	0	3018200..3018955	-	251	110643014	-	ECP_2859	-	putative metalloendopeptidase
2798	 53.00	0	3019369..3021666	+	765	110643015	-	ECP_2860	-	xanthine dehydrogenase subunit XdhA
2799	 53.81	0	3021677..3022555	+	292	110643016	-	ECP_2861	-	xanthine dehydrogenase subunit XdhB
2800	 51.04	0	3022552..3023031	+	159	110643017	-	ECP_2862	-	xanthine dehydrogenase subunit XdhC
2801	 45.92	0	3023071..3024849	-	592	110643018	-	ECP_2863	-	sigma-54-dependent transcriptional regulator YgeV
2802	 50.21	0	3025325..3026515	+	396	110643019	-	ECP_2864	-	hypothetical protein
2803	 53.05	0	3026573..3027769	+	398	110643020	-	ECP_2865	-	diaminopropionate ammonia-lyase
2804	 50.74	0	3027827..3029038	+	403	110643021	-	ECP_2866	-	peptidase
2805	 52.60	0	3029091..3030476	+	461	110643022	-	ECP_2867	-	dihydropyrimidinase
2806	 49.52	0	3030524..3031456	+	310	110643023	-	ECP_2868	-	carbamate kinase
2807	 52.40	0	3031497..3033122	-	541	110643024	-	ECP_2869	-	hypothetical protein
2808	 49.28	0	3033170..3033721	-	183	110643025	-	ECP_2870	-	hypothetical protein
2809	 43.31	-1	3034092..3034622	+	176	110643026	-	ECP_2871	-	hypothetical protein
2810	 52.57	0	3034944..3038042	+	1032	110643027	-	ECP_2872	-	putative selenate reductase subunit YgfK
2811	 52.60	0	3038045..3039373	+	442	110643028	-	ECP_2873	-	putative chlorohydrolase/aminohydrolase
2812	 53.59	0	3039424..3040203	+	259	110643029	-	ECP_2874	-	putative selenate reductase subunit YgfM
2813	 52.53	0	3040200..3043070	+	956	110643030	-	ECP_2875	-	putative selenate reductase subunit YgfN
2814	 48.68	0	3043235..3044635	+	466	110643031	-	ECP_2876	-	putative transmembrane transport protein
2815	 48.52	0	3044653..3045969	+	438	110643032	-	ECP_2877	-	guanine deaminase
2816	 53.14	0	3046005..3047372	+	455	110643033	-	ECP_2878	-	hypothetical protein
2817	 55.01	0	3047408..3047896	-	162	110643034	-	ECP_2879	-	putative electron transport protein YgfS
2818	 52.97	0	3047896..3049815	-	639	110643035	-	ECP_2880	-	putative oxidoreductase Fe-S binding subunit
2819	 49.07	0	3050251..3051699	+	482	110643036	-	ECP_2881	-	putative purine permease YgfU
50.53	MEAN

5.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.