IslandPathversion 1.0

IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.53 STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2691	 45.55	0	2884969..2885754	-	261	110642907	-	ECP_2747	-	oxidoreductase YgcW
2692	 48.98	0	2886072..2887349	+	425	110642908	-	ECP_2748	-	hypothetical protein
2693	 49.15	0	2887376..2888854	+	492	110642909	-	ECP_2749	-	sugar kinase YgcE
2694	 47.67	0	2889019..2889939	+	306	110642910	-	ECP_2750	-	aminoimidazole riboside kinase
2695	 47.10	0	2890107..2891624	+	505	110642911	-	ECP_2751	-	sucrose porin precursor
2696	 46.39	0	2891685..2893055	+	456	110642912	-	ECP_2752	-	PTS system, sucrose-specific IIBC component
2697	 48.58	0	2893055..2894464	+	469	110642913	-	ECP_2753	-	sucrose-6-phosphate hydrolase
2698	 47.02	0	2894490..2895497	+	335	110642914	-	ECP_2754	-	sucrose operon repressor
2699	 50.89	0	2895582..2896253	-	223	110642915	-	ECP_2755	-	hypothetical protein
2700	 42.79	-1	2896426..2897028	+	200	110642916	-	ECP_2756	-	hypothetical protein
2701	 48.18	0	2897042..2897950	+	302	110642917	-	ECP_2757	-	hypothetical protein
2702	 45.34	0	2897965..2899113	+	382	110642918	-	ECP_2758	-	hypothetical protein
2703	 43.76	-1	2899119..2899991	+	290	110642919	-	ECP_2759	-	hypothetical protein
2704	 50.58	0	2900051..2901349	-	432	110642920	eno	ECP_2760	-	phosphopyruvate hydratase
2705	 52.01	0	2901437..2903074	-	545	110642921	-	ECP_2761	-	CTP synthetase
2706	 51.26	0	2903302..2904093	-	263	110642922	mazG	ECP_2762	-	nucleoside triphosphate pyrophosphohydrolase
2707	 47.92	0	2904165..2904500	-	111	110642923	-	ECP_2763	-	toxin ChpA
2708	 49.00	0	2904500..2904748	-	82	110642924	-	ECP_2764	-	antitoxin MazE
2709	 53.87	0	2904826..2907060	-	744	110642925	relA	ECP_2765	-	GDP/GTP pyrophosphokinase
2710	 50.92	0	2907108..2908409	-	433	110642926	rumA	ECP_2766	-	23S rRNA 5-methyluridine methyltransferase
2711	 49.73	0	2908466..2911222	+	918	110642927	-	ECP_2767	-	hybrid sensory histidine kinase BarA
2712	 53.69	0	2911453..2912793	-	446	110642928	-	ECP_2768	-	glucarate dehydratase
2713	 53.91	0	2912814..2914154	-	446	110642929	-	ECP_2769	-	glucarate dehydratase related protein
2714	 52.11	0	2914156..2915508	-	450	110642930	-	ECP_2770	-	glucarate transporter
2715	 51.78	0	2915942..2916391	-	149	110642931	-	ECP_2771	-	flavodoxin
2716	 53.90	0	2916409..2917191	-	260	110642932	-	ECP_2772	-	tRNA pseudouridine synthase C
2717	 52.42	0	2917191..2917520	-	109	110642933	-	ECP_2773	-	hypothetical protein
2718	 51.06	0	2917767..2917907	-	46	110642934	-	ECP_2774	-	hypothetical protein
2719	 48.35	0	2918142..2918687	-	181	110642935	-	ECP_2775	-	SecY interacting protein Syd
2720	 49.00	0	2918755..2919603	+	282	110642936	queF	ECP_2776	-	7-cyano-7-deazaguanine reductase
2721	 51.28	0	2919715..2921079	+	454	110642937	-	ECP_2777	-	hypothetical protein
2722	 52.33	0	2921636..2922925	+	429	110642938	-	ECP_2778	-	serine transporter
2723	 52.51	0	2924463..2925218	+	251	110642939	xni	ECP_2781	-	exonuclease IX
2724	 53.65	0	2925323..2926474	-	383	110642940	-	ECP_2782	-	L-1,2-propanediol oxidoreductase
2725	 49.69	0	2926499..2927146	-	215	110642941	-	ECP_2783	-	L-fuculose phosphate aldolase
2726	 47.53	0	2927693..2929009	+	438	110642942	-	ECP_2784	-	L-fucose transporter
2727	 54.45	0	2929042..2930817	+	591	110642943	fucI	ECP_2785	-	L-fucose isomerase
2728	 50.38	0	2930896..2932344	+	482	110642944	-	ECP_2786	-	L-fuculokinase
2729	 48.94	0	2932346..2932768	+	140	110642945	-	ECP_2787	-	fucose operon FucU protein
2730	 47.64	0	2932944..2933558	+	204	110642946	-	ECP_2788	-	DNA-binding transcriptional activator
2731	 51.95	0	2933602..2934702	-	366	110642947	-	ECP_2789	-	putative RNA 2'-O-ribose methyltransferase
2732	 54.29	0	2934695..2935090	-	131	110642948	-	ECP_2790	-	hypothetical protein
2733	 49.67	0	2935109..2936026	-	305	110642949	-	ECP_2791	-	DNA-binding transcriptional activator GcvA
2734	 46.93	0	2936377..2936604	-	75	110642950	-	ECP_2792	-	putative lipoprotein
2735	 55.89	+1	2936796..2938001	+	401	110642951	-	ECP_2793	-	cysteine sulfinate desulfinase
2736	 55.18	0	2938001..2938444	+	147	110642952	-	ECP_2794	-	hypothetical protein
2737	 55.02	0	2938495..2939301	-	268	110642953	-	ECP_2795	-	hypothetical protein
2738	 52.55	0	2939378..2940475	-	365	162138277	mltA	ECP_2796	-	murein transglycosylase A
2739	 44.71	-1	2941612..2942112	+	166	110642955	-	ECP_2800	-	putative cytoplasmic protein
2740	 51.07	0	2942171..2943709	+	512	110642956	-	ECP_2801	-	putative cytoplasmic protein
2741	 59.49	+1	2943727..2945064	+	445	110642957	-	ECP_2802	-	hypothetical protein
2742	 59.01	+1	2945061..2945726	+	221	110642958	-	ECP_2803	-	hypothetical protein
2743	 61.28	+2	2945739..2947391	+	550	110642959	-	ECP_2804	-	OmpA family membrane protein
2744	 51.42	0	2947449..2947940	+	163	110642960	-	ECP_2805	-	hemolysin-coregulated protein Hcp
2745	 60.75	+1	2948132..2950768	+	878	110642961	-	ECP_2806	-	putative CLPA/B-type chaperone protein
2746	 56.67	+1	2950780..2953269	+	829	110642962	-	ECP_2807	-	putative VGR-related protein
2747	 40.66	-1	2953335..2954153	+	272	110642963	-	ECP_2808	-	putative transmembrane protein
2748	 35.69	-2	2954167..2954760	+	197	110642964	-	ECP_2809	-	hypothetical protein
2749	 55.87	+1	2954805..2957324	+	839	110642965	-	ECP_2810	-	putative VGR-related protein
2750	 33.46	-2	2957317..2958105	+	262	110642966	-	ECP_2811	-	hypothetical protein
2751	 30.94	-2	2958190..2959110	+	306	110642967	-	ECP_2812	-	hypothetical protein
2752	 55.97	+1	2959367..2960581	+	404	110642968	-	ECP_2813	-	hypothetical protein
2753	 60.75	+1	2960533..2963964	+	1143	110642969	-	ECP_2814	-	hypothetical protein
2754	 61.17	+2	2963930..2965567	+	545	110642970	-	ECP_2815	-	hypothetical protein
2755	 41.09	-1	2965573..2967003	+	476	110642971	-	ECP_2816	-	hypothetical protein
2756	 30.62	-2	2966996..2967400	+	134	110642972	-	ECP_2817	-	hypothetical protein
2757	 57.55	+1	2967475..2967792	+	105	110642973	-	ECP_2818	-	hypothetical protein
2758	 56.99	+1	2967749..2969236	+	495	110642974	-	ECP_2819	-	hypothetical protein
2759	 59.07	+1	2969200..2970279	+	359	110642975	-	ECP_2820	-	hypothetical protein
2760	 51.21	0	2970260..2970796	+	178	110642976	-	ECP_2821	-	hypothetical protein
2761	 53.61	0	2970800..2971228	+	142	110642977	-	ECP_2822	-	hypothetical protein
2762	 55.27	0	2971228..2972604	+	458	110642978	-	ECP_2823	-	hypothetical protein
2763	 44.41	-1	2972904..2973851	-	315	110642979	-	ECP_2824	-	2-hydroxyacid dehydrogenase
2764	 41.04	-1	2973923..2974519	-	198	110642980	-	ECP_2825	-	posphosugar isomerase
2765	 37.50	-2	2974522..2975697	-	391	110642981	-	ECP_2826	-	putative aminotransferase
2766	 44.31	-1	2975697..2977226	-	509	110642982	-	ECP_2827	-	PTS system, maltose and glucose-specific IIABC component
2767	 33.82	-2	2977309..2978133	-	274	110642983	-	ECP_2828	-	putative transcriptional antiterminator protein
2768	 53.67	0	2978391..2979644	-	417	110642984	-	ECP_2829	-	putative amidase
2769	 52.40	0	2979876..2981207	+	443	110642985	-	ECP_2830	-	N-acetylglutamate synthase
2770	 54.90	0	2981289..2983115	-	608	110642986	RecD	ECP_2831	-	exonuclease V subunit alpha
2771	 54.36	0	2983115..2986657	-	1180	110642987	RecB	ECP_2832	-	exonuclease V subunit beta
2772	 50.78	0	2986650..2989538	-	962	110642988	-	ECP_2833	-	protease III
2773	 53.31	0	2989714..2993082	-	1122	110642989	recC	ECP_2834	-	exonuclease V subunit gamma
2774	 54.63	0	2993095..2993418	-	107	110642990	-	ECP_2835	-	hypothetical protein
2775	 53.19	0	2993403..2993810	-	135	110642991	-	ECP_2836	-	hypothetical protein
2776	 53.86	0	2993807..2994610	-	267	110642992	-	ECP_2837	-	hypothetical protein
2777	 54.35	0	2994361..2994831	-	156	110642993	-	ECP_2838	-	hypothetical protein
2778	 51.19	0	2995016..2995810	-	264	110642995	thyA	ECP_2840	-	thymidylate synthase
2779	 52.63	0	2995817..2996692	-	291	110642996	-	ECP_2841	-	prolipoprotein diacylglyceryl transferase
2780	 53.72	0	2996843..2999089	-	748	110642997	-	ECP_2842	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein
2781	 49.15	0	2999102..2999632	-	176	110642998	-	ECP_2843	-	dinucleoside polyphosphate hydrolase
2782	 53.33	0	3000317..3001006	+	229	110642999	-	ECP_2844	-	DNA mismatch repair protein
2783	 51.12	0	3001075..3001788	+	237	110643000	-	ECP_2845	-	putative integral membrane transport protein
2784	 43.38	-1	3001926..3002144	+	72	110643001	-	ECP_2846	-	putative lipoprotein
2785	 54.47	0	3002252..3003292	+	346	110643002	-	ECP_2847	-	putative aldo-keto reductase
2786	 55.11	0	3003324..3004517	-	397	110643003	-	ECP_2848	-	hypothetical protein
2787	 52.36	0	3004510..3006669	-	719	110643004	-	ECP_2849	-	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase
2788	 53.00	0	3007255..3008286	+	343	110643005	-	ECP_2850	-	DNA-binding transcriptional regulator GalR
2789	 52.65	0	3008293..3009555	-	420	110643006	-	ECP_2851	-	diaminopimelate decarboxylase
2790	 53.53	0	3009677..3010612	+	311	110643007	-	ECP_2852	-	DNA-binding transcriptional regulator LysR
50.53	MEAN

5.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.