IslandPathversion 1.0

IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.53 STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2639	 50.82	0	2834033..2834461	+	142	110642855	-	ECP_2695	-	putative molybdenum-pterin-binding protein
2640	 50.43	0	2834500..2834844	-	114	110642856	-	ECP_2696	-	hypothetical protein
2641	 46.15	0	2834899..2835054	-	51	110642857	-	ECP_2697	-	hypothetical protein
2642	 33.73	-2	2835907..2836404	+	165	110642858	-	ECP_2698	-	hypothetical protein
2643	 39.21	-2	2836428..2837312	-	294	110642859	-	ECP_2699	-	hypothetical protein
2644	 27.36	-2	2837717..2837917	+	66	110642860	-	ECP_2700	-	hypothetical protein
2645	 43.93	-1	2838745..2839782	+	345	110642861	-	ECP_2701	-	transposase
2646	 37.64	-2	2839884..2841254	-	456	110642862	-	ECP_2702	-	hypothetical protein
2647	 50.38	0	2841293..2842072	-	259	110642863	-	ECP_2703	-	transposase/IS protein
2648	 53.78	0	2842072..2842428	-	118	110642864	-	ECP_2704	-	putative transposase
2649	 44.55	-1	2842488..2842790	+	100	110642865	-	ECP_2705	-	putative transposase
2650	 52.86	0	2842817..2843656	+	279	110642866	-	ECP_2706	-	putative transposase protein
2651	 52.40	0	2843660..2844346	-	228	110642867	-	ECP_2707	-	putative transposase
2652	 39.58	-2	2844403..2844642	+	79	110642868	-	ECP_2708	-	hypothetical protein
2653	 45.92	0	2844856..2848707	-	1283	110642869	-	ECP_2709	-	hypothetical protein
2654	 46.53	0	2848976..2849725	-	249	110642870	-	ECP_2710	-	hypothetical protein
2655	 55.70	0	2849946..2852507	+	853	110642871	-	ECP_2711	-	DNA mismatch repair protein
2656	 42.77	-1	2852613..2853269	+	218	110642872	-	ECP_2712	-	serine/threonine-specific protein phosphatase 2
2657	 52.13	0	2853320..2854117	-	265	110642873	-	ECP_2713	-	DeoR family transcriptional regulator
2658	 53.80	0	2854283..2855191	+	302	110642874	-	ECP_2714	-	oxidoreductase YgbJ
2659	 54.71	0	2855188..2856450	+	420	110642875	-	ECP_2715	-	hypothetical protein
2660	 52.90	0	2856447..2857085	+	212	110642876	-	ECP_2716	-	putative aldolase
2661	 51.99	0	2857090..2857866	+	258	110642877	-	ECP_2717	-	hypothetical protein
2662	 50.83	0	2857955..2858560	+	201	110642878	-	ECP_2718	-	hypothetical protein
2663	 52.07	0	2858574..2859320	+	248	110642879	-	ECP_2719	-	hypothetical protein
2664	 38.98	-2	2859463..2860506	-	347	110642880	-	ECP_2720	-	beta-lactamase-like protein
2665	 49.46	0	2860731..2861282	+	183	110642881	-	ECP_2721	-	hypothetical protein
2666	 52.06	0	2861460..2862452	-	330	110642882	-	ECP_2722	-	RNA polymerase sigma factor RpoS
2667	 52.81	0	2862515..2863654	-	379	110642883	-	ECP_2723	-	lipoprotein NlpD
2668	 54.90	0	2863794..2863946	-	50	110642884	-	ECP_2724	-	protein-L-isoaspartate O-methyltransferase
2669	 51.79	0	2864085..2864420	-	111	110642885	-	ECP_2725	-	protein-L-isoaspartate O-methyltransferase
2670	 54.86	0	2864414..2865175	-	253	110642886	surE	ECP_2726	-	stationary phase survival protein SurE
2671	 51.90	0	2865156..2866205	-	349	110642887	truD	ECP_2727	-	tRNA pseudouridine synthase D
2672	 54.37	0	2866202..2866681	-	159	110642888	ispF	ECP_2728	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2673	 55.98	+1	2866681..2867391	-	236	110642889	ispD	ECP_2729	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2674	 51.60	0	2867410..2867721	-	103	110642890	ftsB	ECP_2730	-	cell division protein FtsB
2675	 48.77	0	2867914..2868237	-	107	110642891	-	ECP_2731	-	hypothetical protein
2676	 51.98	0	2868287..2868892	-	201	110642892	-	ECP_2732	-	adenylylsulfate kinase
2677	 54.27	0	2868892..2870319	-	475	110642893	cysN	ECP_2733	-	sulfate adenylyltransferase subunit 1
2678	 53.36	0	2870321..2871229	-	302	110642894	-	ECP_2734	-	sulfate adenylyltransferase subunit 2
2679	 49.23	0	2871481..2872518	+	345	110642895	-	ECP_2735	-	alkaline phosphatase isozyme conversion aminopeptidase
2680	 51.16	0	2873061..2873795	-	244	110642896	-	ECP_2736	-	phosphoadenosine phosphosulfate reductase
2681	 55.75	0	2873869..2875581	-	570	110642897	-	ECP_2737	-	sulfite reductase subunit beta
2682	 56.33	+1	2875581..2877380	-	599	110642898	cysJ	ECP_2738	-	sulfite reductase subunit alpha
2683	 49.18	0	2877696..2878061	+	121	110642899	-	ECP_2739	-	putative 6-pyruvoyl tetrahydrobiopterin synthase
2684	 55.82	+1	2878139..2879410	+	423	110642900	-	ECP_2740	-	electron transfer flavoprotein-quinone oxidoreductase YgcN
2685	 56.32	+1	2879401..2879661	+	86	110642901	-	ECP_2741	-	ferredoxin-like protein YgcO
2686	 46.70	0	2879678..2880253	+	191	110642902	-	ECP_2742	-	putative anti-terminator regulatory protein YgcP
2687	 55.40	0	2880400..2881260	-	286	110642903	-	ECP_2743	-	putative electron transfer flavoprotein subunit YgcQ
2688	 55.85	+1	2881257..2882051	-	264	110642904	-	ECP_2744	-	putative electron transfer flavoprotein subunit YgcR
2689	 53.96	0	2882014..2883351	-	445	110642905	-	ECP_2745	-	metabolite transport protein YgcS
2690	 50.93	0	2883445..2884899	-	484	110642906	-	ECP_2746	-	flavoprotein YgcU
2691	 45.55	0	2884969..2885754	-	261	110642907	-	ECP_2747	-	oxidoreductase YgcW
2692	 48.98	0	2886072..2887349	+	425	110642908	-	ECP_2748	-	hypothetical protein
2693	 49.15	0	2887376..2888854	+	492	110642909	-	ECP_2749	-	sugar kinase YgcE
2694	 47.67	0	2889019..2889939	+	306	110642910	-	ECP_2750	-	aminoimidazole riboside kinase
2695	 47.10	0	2890107..2891624	+	505	110642911	-	ECP_2751	-	sucrose porin precursor
2696	 46.39	0	2891685..2893055	+	456	110642912	-	ECP_2752	-	PTS system, sucrose-specific IIBC component
2697	 48.58	0	2893055..2894464	+	469	110642913	-	ECP_2753	-	sucrose-6-phosphate hydrolase
2698	 47.02	0	2894490..2895497	+	335	110642914	-	ECP_2754	-	sucrose operon repressor
2699	 50.89	0	2895582..2896253	-	223	110642915	-	ECP_2755	-	hypothetical protein
2700	 42.79	-1	2896426..2897028	+	200	110642916	-	ECP_2756	-	hypothetical protein
2701	 48.18	0	2897042..2897950	+	302	110642917	-	ECP_2757	-	hypothetical protein
2702	 45.34	0	2897965..2899113	+	382	110642918	-	ECP_2758	-	hypothetical protein
2703	 43.76	-1	2899119..2899991	+	290	110642919	-	ECP_2759	-	hypothetical protein
2704	 50.58	0	2900051..2901349	-	432	110642920	eno	ECP_2760	-	phosphopyruvate hydratase
2705	 52.01	0	2901437..2903074	-	545	110642921	-	ECP_2761	-	CTP synthetase
2706	 51.26	0	2903302..2904093	-	263	110642922	mazG	ECP_2762	-	nucleoside triphosphate pyrophosphohydrolase
2707	 47.92	0	2904165..2904500	-	111	110642923	-	ECP_2763	-	toxin ChpA
2708	 49.00	0	2904500..2904748	-	82	110642924	-	ECP_2764	-	antitoxin MazE
2709	 53.87	0	2904826..2907060	-	744	110642925	relA	ECP_2765	-	GDP/GTP pyrophosphokinase
2710	 50.92	0	2907108..2908409	-	433	110642926	rumA	ECP_2766	-	23S rRNA 5-methyluridine methyltransferase
2711	 49.73	0	2908466..2911222	+	918	110642927	-	ECP_2767	-	hybrid sensory histidine kinase BarA
2712	 53.69	0	2911453..2912793	-	446	110642928	-	ECP_2768	-	glucarate dehydratase
2713	 53.91	0	2912814..2914154	-	446	110642929	-	ECP_2769	-	glucarate dehydratase related protein
2714	 52.11	0	2914156..2915508	-	450	110642930	-	ECP_2770	-	glucarate transporter
2715	 51.78	0	2915942..2916391	-	149	110642931	-	ECP_2771	-	flavodoxin
2716	 53.90	0	2916409..2917191	-	260	110642932	-	ECP_2772	-	tRNA pseudouridine synthase C
2717	 52.42	0	2917191..2917520	-	109	110642933	-	ECP_2773	-	hypothetical protein
2718	 51.06	0	2917767..2917907	-	46	110642934	-	ECP_2774	-	hypothetical protein
2719	 48.35	0	2918142..2918687	-	181	110642935	-	ECP_2775	-	SecY interacting protein Syd
2720	 49.00	0	2918755..2919603	+	282	110642936	queF	ECP_2776	-	7-cyano-7-deazaguanine reductase
2721	 51.28	0	2919715..2921079	+	454	110642937	-	ECP_2777	-	hypothetical protein
2722	 52.33	0	2921636..2922925	+	429	110642938	-	ECP_2778	-	serine transporter
2723	 52.51	0	2924463..2925218	+	251	110642939	xni	ECP_2781	-	exonuclease IX
2724	 53.65	0	2925323..2926474	-	383	110642940	-	ECP_2782	-	L-1,2-propanediol oxidoreductase
2725	 49.69	0	2926499..2927146	-	215	110642941	-	ECP_2783	-	L-fuculose phosphate aldolase
2726	 47.53	0	2927693..2929009	+	438	110642942	-	ECP_2784	-	L-fucose transporter
2727	 54.45	0	2929042..2930817	+	591	110642943	fucI	ECP_2785	-	L-fucose isomerase
2728	 50.38	0	2930896..2932344	+	482	110642944	-	ECP_2786	-	L-fuculokinase
2729	 48.94	0	2932346..2932768	+	140	110642945	-	ECP_2787	-	fucose operon FucU protein
2730	 47.64	0	2932944..2933558	+	204	110642946	-	ECP_2788	-	DNA-binding transcriptional activator
2731	 51.95	0	2933602..2934702	-	366	110642947	-	ECP_2789	-	putative RNA 2'-O-ribose methyltransferase
2732	 54.29	0	2934695..2935090	-	131	110642948	-	ECP_2790	-	hypothetical protein
2733	 49.67	0	2935109..2936026	-	305	110642949	-	ECP_2791	-	DNA-binding transcriptional activator GcvA
2734	 46.93	0	2936377..2936604	-	75	110642950	-	ECP_2792	-	putative lipoprotein
2735	 55.89	+1	2936796..2938001	+	401	110642951	-	ECP_2793	-	cysteine sulfinate desulfinase
2736	 55.18	0	2938001..2938444	+	147	110642952	-	ECP_2794	-	hypothetical protein
2737	 55.02	0	2938495..2939301	-	268	110642953	-	ECP_2795	-	hypothetical protein
2738	 52.55	0	2939378..2940475	-	365	162138277	mltA	ECP_2796	-	murein transglycosylase A
50.53	MEAN

5.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.