IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.53   STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2012	 51.29	0	2124477..2125328	-	283	110642227	-	ECP_2057	-	hypothetical protein
2013	 50.65	0	2125595..2126524	-	309	110642228	-	ECP_2058	-	LysR family transcriptional regulator
2014	 52.00	0	2126570..2127394	-	274	110642229	-	ECP_2059	-	protein YeeZ precursor
2015	 43.14	-1	2127477..2127731	-	84	110642230	-	ECP_2060	-	hypothetical protein
2016	 48.02	0	2127728..2127979	-	83	110642231	-	ECP_2061	-	antitoxin YefM
2017	 54.33	0	2128458..2129357	+	299	110642232	hisG	ECP_2062	-	ATP phosphoribosyltransferase
2018	 57.93	+1	2129363..2130667	+	434	110642233	hisD	ECP_2063	-	histidinol dehydrogenase
2019	 55.18	0	2130664..2131734	+	356	110642234	-	ECP_2064	-	histidinol-phosphate aminotransferase
2020	 53.65	0	2131734..2132801	+	355	110642235	-	ECP_2065	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2021	 55.84	+1	2132801..2133391	+	196	110642236	hisH	ECP_2066	-	imidazole glycerol phosphate synthase subunit HisH
2022	 55.83	+1	2133391..2134128	+	245	110642237	-	ECP_2067	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2023	 52.77	0	2134110..2134886	+	258	110642238	-	ECP_2068	-	imidazole glycerol phosphate synthase subunit HisF
2024	 53.92	0	2134880..2135491	+	203	110642239	-	ECP_2069	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2025	 45.81	0	2135677..2136654	-	325	110642240	-	ECP_2070	-	chain length determinant protein
2026	 43.87	-1	2136797..2137963	-	388	110642241	-	ECP_2071	-	UDP-glucose 6-dehydrogenase
2027	 50.25	0	2138213..2139619	-	468	110642242	-	ECP_2072	-	6-phosphogluconate dehydrogenase
2028	 54.85	0	2139782..2141152	-	456	110642243	-	ECP_2073	-	phosphomannomutase
2029	 38.09	-2	2141235..2142686	-	483	110642244	-	ECP_2074	-	mannose-1-phosphate guanylyltransferase
2030	 30.51	-2	2142664..2143869	-	401	110642245	-	ECP_2075	-	putative glycosyltransferase
2031	 35.62	-2	2143890..2144897	-	335	110642246	-	ECP_2076	-	UDP-glucose 4-epimerase
2032	 27.92	-2	2144914..2146059	-	381	110642247	-	ECP_2077	-	glycosyltransferase
2033	 33.62	-2	2146046..2147077	-	343	110642248	-	ECP_2078	-	putative glycosyltransferase
2034	 31.24	-2	2147074..2147934	-	286	110642249	-	ECP_2079	-	putative glycosyltransferase
2035	 30.65	-2	2147940..2149283	-	447	110642250	-	ECP_2080	-	antigen polymerase
2036	 31.32	-2	2149283..2150521	-	412	110642251	-	ECP_2081	-	putative O antigen flippase
2037	 51.34	0	2150896..2151789	-	297	110642252	-	ECP_2082	-	UTP--glucose-1-phosphate uridylyltransferase subunit GalF
2038	 46.52	0	2151964..2153358	-	464	110642253	-	ECP_2083	-	putative colanic acid biosynthesis protein
2039	 54.22	0	2153369..2154589	-	406	110642254	-	ECP_2084	-	putative colanic acid biosynthesis glycosyl transferase WcaL
2040	 54.18	0	2154586..2155866	-	426	110642255	-	ECP_2085	-	putative pyruvyl transferase
2041	 53.96	0	2156432..2157910	-	492	110642256	-	ECP_2086	-	colanic acid exporter
2042	 54.05	0	2157912..2159306	-	464	110642257	-	ECP_2087	-	putative UDP-glucose lipid carrier transferase
2043	 55.58	0	2159361..2160731	-	456	110642258	-	ECP_2088	-	phosphomannomutase
2044	 54.91	0	2160924..2162360	-	478	110642259	-	ECP_2089	-	mannose-1-phosphate guanylyltransferase
2045	 56.05	+1	2162363..2163586	-	407	110642260	-	ECP_2090	-	glycosyl transferase
2046	 55.62	0	2163583..2164062	-	159	110642261	-	ECP_2091	-	GDP-mannose mannosyl hydrolase
2047	 56.00	+1	2164065..2165030	-	321	110642262	-	ECP_2092	-	GDP-fucose synthetase
2048	 54.10	0	2165033..2166154	-	373	110642263	-	ECP_2093	-	GDP-mannose 4,6-dehydratase
2049	 48.45	0	2166181..2166729	-	182	110642264	-	ECP_2094	-	putative colanic acid biosynthesis acetyltransferase WcaF
2050	 45.65	0	2166745..2167491	-	248	110642265	-	ECP_2095	-	glycosyl transferase
2051	 42.78	-1	2167502..2168719	-	405	110642266	-	ECP_2096	-	putative colanic acid biosynthesis protein
2052	 53.37	0	2168694..2169911	-	405	110642267	-	ECP_2097	-	glycosyl transferase
2053	 54.60	0	2169908..2170396	-	162	110642268	-	ECP_2098	-	putative colanic acid biosynthesis acetyltransferase WcaB
2054	 51.79	0	2170399..2171238	-	279	110642269	-	ECP_2099	-	glycosyl transferase
2055	 52.94	0	2171331..2173493	-	720	110642270	-	ECP_2100	-	tyrosine kinase
2056	 54.28	0	2173496..2173939	-	147	110642271	-	ECP_2101	-	tyrosine phosphatase
2057	 53.33	0	2173945..2175084	-	379	110642272	-	ECP_2102	-	putative polysaccharide export protein wza precursor
2058	 52.65	0	2175743..2177326	+	527	110642273	-	ECP_2103	-	hypothetical protein
2059	 52.32	0	2177619..2179472	-	617	110642274	-	ECP_2104	-	putative assembly protein
2060	 60.14	+1	2179494..2180075	-	193	110642275	dcd	ECP_2105	-	deoxycytidine triphosphate deaminase
2061	 48.44	0	2180167..2180808	-	213	110642276	-	ECP_2106	-	uridine kinase
2062	 52.17	0	2181126..2184443	+	1105	110642277	-	ECP_2107	-	putative sensor protein
2063	 55.01	0	2184553..2185401	-	282	110642278	-	ECP_2108	-	3-methyl-adenine DNA glycosylase II
2064	 56.02	+1	2185535..2186887	+	450	110642279	-	ECP_2109	-	putative chaperone
2065	 51.67	0	2186900..2188840	-	646	110642280	-	ECP_2110	-	hypothetical protein
2066	 51.97	0	2188837..2189598	-	253	110642281	-	ECP_2111	-	hypothetical protein
2067	 55.15	0	2189595..2189759	-	54	110642282	-	ECP_2112	-	hypothetical protein
2068	 51.56	0	2189838..2190254	-	138	110642283	-	ECP_2113	-	hypothetical protein
2069	 54.65	0	2191135..2192382	+	415	110642284	-	ECP_2114	-	multidrug efflux system subunit MdtA
2070	 56.55	+1	2192382..2195504	+	1040	110642285	-	ECP_2115	-	multidrug efflux system subunit MdtB
2071	 56.11	+1	2195505..2198582	+	1025	110642286	-	ECP_2116	-	multidrug efflux system subunit MdtC
2072	 56.00	+1	2198583..2199998	+	471	110642287	-	ECP_2117	-	multidrug efflux system protein MdtE
2073	 53.21	0	2199995..2201398	+	467	110642288	-	ECP_2118	-	signal transduction histidine-protein kinase BaeS
2074	 53.80	0	2201395..2202117	+	240	110642289	-	ECP_2119	-	DNA-binding transcriptional regulator BaeR
2075	 48.35	0	2202297..2202629	+	110	110642290	-	ECP_2120	-	hypothetical protein
2076	 44.88	-1	2202754..2203368	-	204	110642291	-	ECP_2121	-	hypothetical protein
2077	 40.59	-1	2203420..2205528	-	702	110642292	-	ECP_2122	-	hypothetical protein
2078	 40.73	-1	2205539..2206255	-	238	110642293	-	ECP_2123	-	hypothetical protein
2079	 37.78	-2	2206255..2207469	-	404	110642294	-	ECP_2124	-	putative cytoplasmic protein
2080	 54.48	0	2207957..2209318	+	453	110642295	-	ECP_2125	-	putative protease YegQ
2081	 38.68	-2	2209818..2210135	-	105	110642296	-	ECP_2126	-	hypothetical protein
2082	 49.00	0	2210551..2211450	+	299	110642297	-	ECP_2127	-	lipid kinase
2083	 46.64	0	2211532..2212305	-	257	110642298	-	ECP_2128	-	galactitol utilization operon repressor
2084	 49.89	0	2212411..2213358	-	315	110642299	-	ECP_2129	-	galactitol-1-phosphate dehydrogenase
2085	 51.33	0	2213500..2214855	-	451	110642300	-	ECP_2130	-	PTS system, galactitol-specific IIC component
2086	 43.51	-1	2214859..2215143	-	94	110642301	-	ECP_2131	-	galactitol-specific PTS system component IIB
2087	 42.83	-1	2215174..2215626	-	150	110642302	-	ECP_2132	-	galactitol-specific PTS system component IIA
2088	 47.90	0	2215636..2216898	-	420	110642303	-	ECP_2133	-	putative tagatose 6-phosphate kinase gatZ
2089	 52.75	0	2216927..2217781	-	284	110642304	gatY	ECP_2134	-	tagatose-bisphosphate aldolase
2090	 51.85	0	2218008..2219060	-	350	110642305	-	ECP_2135	-	fructose-bisphosphate aldolase
2091	 50.63	0	2219317..2220594	+	425	110642306	-	ECP_2136	-	putative nucleoside transporter YegT
2092	 55.02	0	2220591..2221595	+	334	110642307	-	ECP_2137	-	hypothetical protein
2093	 56.52	+1	2221592..2222557	+	321	110642308	-	ECP_2138	-	sugar kinase YegV
2094	 51.94	0	2222531..2223277	-	248	110642309	-	ECP_2139	-	transcriptional regulator YegW
2095	 47.25	0	2223329..2224147	-	272	110642310	-	ECP_2140	-	hypothetical protein
2096	 54.68	0	2224212..2225012	-	266	110642311	-	ECP_2141	-	phosphomethylpyrimidine kinase
2097	 55.13	0	2225009..2225797	-	262	110642312	-	ECP_2142	-	hydroxyethylthiazole kinase
2098	 47.62	0	2226020..2226292	-	90	110642313	-	ECP_2143	-	hypothetical protein
2099	 51.64	0	2226413..2227237	+	274	110642314	-	ECP_2144	-	nickel/cobalt efflux protein RcnA
2100	 50.44	0	2227456..2227794	+	112	110642315	-	ECP_2145	-	hypothetical protein
2101	 38.26	-2	2227876..2228910	-	344	110642316	-	ECP_2146	-	hypothetical protein
2102	 45.18	-1	2228926..2231406	-	826	110642317	-	ECP_2147	-	outer membrane usher protein YehB
2103	 38.81	-2	2231422..2232096	-	224	110642318	-	ECP_2148	-	fimbrial chaperone
2104	 41.25	-1	2232177..2232719	-	180	110642319	-	ECP_2149	-	hypothetical protein
2105	 42.55	-1	2233013..2233294	-	93	110642320	-	ECP_2150	-	hypothetical protein
2106	 53.69	0	2233557..2234666	-	369	110642321	-	ECP_2151	-	putative ATPase
2107	 52.28	0	2234789..2236831	+	680	110642322	metG	ECP_2152	-	methionyl-tRNA synthetase
2108	 50.25	0	2236972..2240760	+	1262	110642323	-	ECP_2153	-	molybdate metabolism regulator
2109	 50.51	0	2240770..2244402	+	1210	110642324	-	ECP_2154	-	hypothetical protein
2110	 42.47	-1	2244463..2244648	+	61	110642325	-	ECP_2155	-	hypothetical protein
2111	 54.45	0	2245483..2246571	+	362	110642326	-	ECP_2156	-	hypothetical protein
50.53	MEAN

5.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.