IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.53   STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1955	 46.03	0	2081949..2082641	+	230	110642170	-	ECP_2000	-	hypothetical protein
1956	 48.45	0	2082643..2083416	+	257	110642171	-	ECP_2001	-	hypothetical protein
1957	 47.08	0	2083687..2084166	+	159	110642172	-	ECP_2002	-	hypothetical protein
1958	 53.85	0	2084106..2084222	+	38	110642173	-	ECP_2003	-	hypothetical protein
1959	 41.56	-1	2084418..2085632	+	404	110642174	-	ECP_2004	-	putative carbohydrate kinase
1960	 39.39	-2	2085646..2086404	+	252	110642175	-	ECP_2005	-	hypothetical protein
1961	 46.69	0	2086458..2087423	+	321	110642176	-	ECP_2006	-	hypothetical protein
1962	 47.83	0	2087426..2088460	+	344	110642177	-	ECP_2007	-	putative phosphotriesterase
1963	 56.14	+1	2088500..2088613	-	37	110642178	-	ECP_2008	-	hypothetical protein
1964	 51.72	0	2088676..2088762	-	28	110642179	-	ECP_2009	-	hypothetical protein
1965	 50.62	0	2088872..2089033	-	53	110642180	-	ECP_2010	-	putative transposase (part)
1966	 50.58	0	2089112..2089969	-	285	110642181	-	ECP_2011	-	putative transposase
1967	 50.38	0	2090228..2090491	-	87	110642182	-	ECP_2012	-	transposase
1968	 53.75	0	2090775..2091014	-	79	110642183	-	ECP_2013	-	hypothetical protein
1969	 52.74	0	2091160..2091561	-	133	110642184	-	ECP_2014	-	hypothetical protein
1970	 58.17	+1	2091727..2092185	-	152	110642185	-	ECP_2015	-	hypothetical protein
1971	 55.05	0	2092100..2092297	-	65	110642186	-	ECP_2016	-	hypothetical protein
1972	 50.39	0	2093064..2093444	+	126	110642187	-	ECP_2017	-	hypothetical protein
1973	 46.58	0	2093412..2093645	-	77	110642188	-	ECP_2018	-	hypothetical protein
1974	 57.73	+1	2093877..2095073	+	398	110642189	-	ECP_2019	-	putative transposase
1975	 53.62	0	2095269..2095475	+	68	110642190	-	ECP_2020	-	putative regulatory protein
1976	 50.58	0	2095569..2096171	+	200	110642191	-	ECP_2021	-	hypothetical protein
1977	 50.46	0	2096645..2096860	+	71	110642192	-	ECP_2022	-	hypothetical protein
1978	 47.19	0	2096951..2097181	-	76	110642193	-	ECP_2023	-	hypothetical protein
1979	 50.00	0	2097197..2097976	-	259	110642194	-	ECP_2024	-	transposase/IS protein
1980	 52.79	0	2097976..2098998	-	340	110642195	-	ECP_2025	-	transposase for insertion sequence IS100
1981	 54.73	0	2099025..2099267	-	80	110642196	-	ECP_2026	-	hypothetical protein
1982	 47.37	0	2099300..2099527	-	75	110642197	-	ECP_2027	-	hypothetical protein
1983	 50.53	0	2099549..2099926	-	125	110642198	-	ECP_2028	-	hypothetical protein
1984	 40.61	-1	2099853..2100113	+	86	110642199	-	ECP_2029	-	hypothetical protein
1985	 51.53	0	2100495..2101280	+	261	110642200	-	ECP_2030	-	hypothetical protein
1986	 50.87	0	2101205..2101666	+	153	110642201	-	ECP_2031	-	hypothetical protein
1987	 47.68	0	2101731..2101967	+	78	110642202	-	ECP_2032	-	hypothetical protein
1988	 56.64	+1	2102508..2103275	-	255	110642203	-	ECP_2033	-	putative ABC transporter
1989	 56.75	+1	2103272..2104330	-	352	110642204	-	ECP_2034	-	iron ABC transporter
1990	 55.29	0	2104349..2105341	-	330	110642205	-	ECP_2035	-	iron-chelating periplasmic-binding protein
1991	 53.60	0	2105349..2107514	-	721	110642206	-	ECP_2036	-	TonB-dependent receptor
1992	 57.01	+1	2107943..2108377	+	144	110642207	-	ECP_2037	-	hypothetical protein
1993	 51.78	0	2108595..2110979	+	794	110642208	-	ECP_2038	-	hypothetical protein
1994	 53.86	0	2110976..2111881	+	301	110642209	-	ECP_2039	-	hypothetical protein
1995	 54.62	0	2111878..2112948	+	356	110642210	-	ECP_2040	-	hypothetical protein
1996	 47.64	0	2113084..2113761	+	225	110642211	-	ECP_2041	-	hypothetical protein
1997	 42.82	-1	2113777..2114187	+	136	110642212	-	ECP_2042	-	hypothetical protein
1998	 56.81	+1	2114408..2115229	+	273	110642213	-	ECP_2043	-	hypothetical protein
1999	 54.64	0	2115492..2115965	+	157	110642214	-	ECP_2044	-	antirestriction protein
2000	 57.23	+1	2115981..2116457	+	158	110642215	-	ECP_2045	-	putative radC-like protein YeeS
2001	 52.70	0	2116526..2116747	+	73	110642216	-	ECP_2046	-	hypothetical protein
2002	 57.99	+1	2116821..2117189	+	122	110642217	-	ECP_2047	-	hypothetical protein
2003	 53.60	0	2117278..2117652	+	124	110642218	-	ECP_2048	-	hypothetical protein
2004	 49.74	0	2117649..2117843	+	64	110642219	-	ECP_2049	-	hypothetical protein
2005	 48.74	0	2118284..2118640	+	118	110642220	-	ECP_2050	-	hypothetical protein
2006	 47.27	0	2118741..2119070	-	109	110642221	-	ECP_2051	-	hypothetical protein
2007	 50.61	0	2119242..2120300	-	352	110642222	-	ECP_2052	-	hypothetical protein
2008	 47.47	0	2120498..2120971	-	157	110642223	-	ECP_2053	-	DNA gyrase inhibitor
2009	 49.10	0	2121090..2122256	-	388	110642224	dacD	ECP_2054	-	D-alanyl-D-alanine carboxypeptidase
2010	 50.49	0	2122465..2123892	+	475	110642225	sbcB	ECP_2055	-	exonuclease I
2011	 53.73	0	2123966..2124421	-	151	110642226	-	ECP_2056	-	hypothetical protein
2012	 51.29	0	2124477..2125328	-	283	110642227	-	ECP_2057	-	hypothetical protein
2013	 50.65	0	2125595..2126524	-	309	110642228	-	ECP_2058	-	LysR family transcriptional regulator
2014	 52.00	0	2126570..2127394	-	274	110642229	-	ECP_2059	-	protein YeeZ precursor
2015	 43.14	-1	2127477..2127731	-	84	110642230	-	ECP_2060	-	hypothetical protein
2016	 48.02	0	2127728..2127979	-	83	110642231	-	ECP_2061	-	antitoxin YefM
2017	 54.33	0	2128458..2129357	+	299	110642232	hisG	ECP_2062	-	ATP phosphoribosyltransferase
2018	 57.93	+1	2129363..2130667	+	434	110642233	hisD	ECP_2063	-	histidinol dehydrogenase
2019	 55.18	0	2130664..2131734	+	356	110642234	-	ECP_2064	-	histidinol-phosphate aminotransferase
2020	 53.65	0	2131734..2132801	+	355	110642235	-	ECP_2065	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2021	 55.84	+1	2132801..2133391	+	196	110642236	hisH	ECP_2066	-	imidazole glycerol phosphate synthase subunit HisH
2022	 55.83	+1	2133391..2134128	+	245	110642237	-	ECP_2067	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2023	 52.77	0	2134110..2134886	+	258	110642238	-	ECP_2068	-	imidazole glycerol phosphate synthase subunit HisF
2024	 53.92	0	2134880..2135491	+	203	110642239	-	ECP_2069	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2025	 45.81	0	2135677..2136654	-	325	110642240	-	ECP_2070	-	chain length determinant protein
2026	 43.87	-1	2136797..2137963	-	388	110642241	-	ECP_2071	-	UDP-glucose 6-dehydrogenase
2027	 50.25	0	2138213..2139619	-	468	110642242	-	ECP_2072	-	6-phosphogluconate dehydrogenase
2028	 54.85	0	2139782..2141152	-	456	110642243	-	ECP_2073	-	phosphomannomutase
2029	 38.09	-2	2141235..2142686	-	483	110642244	-	ECP_2074	-	mannose-1-phosphate guanylyltransferase
2030	 30.51	-2	2142664..2143869	-	401	110642245	-	ECP_2075	-	putative glycosyltransferase
2031	 35.62	-2	2143890..2144897	-	335	110642246	-	ECP_2076	-	UDP-glucose 4-epimerase
2032	 27.92	-2	2144914..2146059	-	381	110642247	-	ECP_2077	-	glycosyltransferase
2033	 33.62	-2	2146046..2147077	-	343	110642248	-	ECP_2078	-	putative glycosyltransferase
2034	 31.24	-2	2147074..2147934	-	286	110642249	-	ECP_2079	-	putative glycosyltransferase
2035	 30.65	-2	2147940..2149283	-	447	110642250	-	ECP_2080	-	antigen polymerase
2036	 31.32	-2	2149283..2150521	-	412	110642251	-	ECP_2081	-	putative O antigen flippase
2037	 51.34	0	2150896..2151789	-	297	110642252	-	ECP_2082	-	UTP--glucose-1-phosphate uridylyltransferase subunit GalF
2038	 46.52	0	2151964..2153358	-	464	110642253	-	ECP_2083	-	putative colanic acid biosynthesis protein
2039	 54.22	0	2153369..2154589	-	406	110642254	-	ECP_2084	-	putative colanic acid biosynthesis glycosyl transferase WcaL
2040	 54.18	0	2154586..2155866	-	426	110642255	-	ECP_2085	-	putative pyruvyl transferase
2041	 53.96	0	2156432..2157910	-	492	110642256	-	ECP_2086	-	colanic acid exporter
2042	 54.05	0	2157912..2159306	-	464	110642257	-	ECP_2087	-	putative UDP-glucose lipid carrier transferase
2043	 55.58	0	2159361..2160731	-	456	110642258	-	ECP_2088	-	phosphomannomutase
2044	 54.91	0	2160924..2162360	-	478	110642259	-	ECP_2089	-	mannose-1-phosphate guanylyltransferase
2045	 56.05	+1	2162363..2163586	-	407	110642260	-	ECP_2090	-	glycosyl transferase
2046	 55.62	0	2163583..2164062	-	159	110642261	-	ECP_2091	-	GDP-mannose mannosyl hydrolase
2047	 56.00	+1	2164065..2165030	-	321	110642262	-	ECP_2092	-	GDP-fucose synthetase
2048	 54.10	0	2165033..2166154	-	373	110642263	-	ECP_2093	-	GDP-mannose 4,6-dehydratase
2049	 48.45	0	2166181..2166729	-	182	110642264	-	ECP_2094	-	putative colanic acid biosynthesis acetyltransferase WcaF
2050	 45.65	0	2166745..2167491	-	248	110642265	-	ECP_2095	-	glycosyl transferase
2051	 42.78	-1	2167502..2168719	-	405	110642266	-	ECP_2096	-	putative colanic acid biosynthesis protein
2052	 53.37	0	2168694..2169911	-	405	110642267	-	ECP_2097	-	glycosyl transferase
2053	 54.60	0	2169908..2170396	-	162	110642268	-	ECP_2098	-	putative colanic acid biosynthesis acetyltransferase WcaB
2054	 51.79	0	2170399..2171238	-	279	110642269	-	ECP_2099	-	glycosyl transferase
50.53	MEAN

5.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.