IslandPathversion 1.0

IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.53 STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1617	 55.20	0	1707596..1708345	-	249	110641831	-	ECP_1657	-	vitamin B12-transporter ATPase
1618	 48.19	0	1708345..1708896	-	183	110641832	-	ECP_1658	-	putative glutathione peroxidase
1619	 54.94	0	1708958..1709938	-	326	110641833	-	ECP_1659	-	vtamin B12-transporter permease
1620	 50.00	0	1710039..1710338	-	99	110641834	ihfA	ECP_1660	-	integration host factor subunit alpha
1621	 54.44	0	1710343..1712730	-	795	110641835	pheT	ECP_1661	-	phenylalanyl-tRNA synthetase subunit beta
1622	 54.67	0	1712745..1713728	-	327	110641836	pheS	ECP_1662	-	phenylalanyl-tRNA synthetase subunit alpha
1623	 48.74	0	1714179..1714535	-	118	110641837	rplT	ECP_1663	-	50S ribosomal protein L20
1624	 50.00	0	1714588..1714785	-	65	110641838	rpmI	ECP_1664	-	50S ribosomal protein L35
1625	 47.82	0	1714882..1715316	-	144	110641839	infC	ECP_1665	-	translation initiation factor IF-3
1626	 49.40	0	1715428..1717356	-	642	110641840	-	ECP_1666	-	threonyl-tRNA synthetase
1627	 35.52	-2	1718042..1718407	+	121	110641841	-	ECP_1667	-	hypothetical protein
1628	 38.56	-2	1718362..1718763	+	133	110641842	-	ECP_1668	-	hypothetical protein
1629	 49.01	0	1719241..1719999	-	252	110641843	-	ECP_1669	-	hypothetical protein
1630	 54.41	0	1720286..1721215	+	309	110641844	-	ECP_1670	-	6-phosphofructokinase 2
1631	 43.99	-1	1721316..1721606	+	96	110641845	-	ECP_1671	-	hypothetical protein
1632	 52.50	0	1721712..1722572	+	286	110641846	-	ECP_1672	-	fructosamine kinase
1633	 44.13	-1	1722613..1723149	-	178	110641847	-	ECP_1673	-	hypothetical protein
1634	 50.97	0	1723296..1723964	+	222	110641848	-	ECP_1674	-	2-deoxyglucose-6-phosphatase
1635	 50.59	0	1724128..1724718	+	196	110641849	-	ECP_1675	-	hypothetical protein
1636	 52.87	0	1724851..1726242	+	463	110641850	-	ECP_1676	-	putative sodium:dicarboxylate symporter YdjN
1637	 51.03	0	1726289..1726531	-	80	110641851	-	ECP_1677	-	cell division modulator
1638	 50.97	0	1726735..1728996	+	753	110641852	katE	ECP_1678	-	hydroperoxidase II
1639	 49.93	0	1729043..1729801	-	252	110641853	-	ECP_1679	-	hypothetical protein
1640	 46.56	0	1729814..1731166	-	450	110641854	-	ECP_1680	-	6-phospho-beta-glucosidase
1641	 41.07	-1	1731270..1732109	-	279	110641855	-	ECP_1681	-	DNA-binding transcriptional regulator ChbR
1642	 48.72	0	1732120..1732470	-	116	110641856	-	ECP_1682	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
1643	 48.42	0	1732521..1733879	-	452	110641857	-	ECP_1683	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC
1644	 43.93	-1	1733964..1734284	-	106	110641858	-	ECP_1684	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB
1645	 48.97	0	1734584..1734922	-	112	110641859	-	ECP_1685	-	DNA-binding transcriptional activator OsmE
1646	 49.88	0	1735124..1735951	+	275	110641860	nadE	ECP_1686	-	NAD synthetase
1647	 50.56	0	1736181..1737068	+	295	110641861	-	ECP_1687	-	nucleotide excision repair endonuclease
1648	 50.52	0	1737028..1737603	-	191	110641862	-	ECP_1688	-	hypothetical protein
1649	 51.03	0	1737806..1738291	-	161	110641863	-	ECP_1689	-	periplasmic protein
1650	 53.46	0	1738621..1739589	-	322	110641864	-	ECP_1690	-	succinylglutamate desuccinylase
1651	 54.32	0	1739582..1740925	-	447	110641865	-	ECP_1691	-	succinylarginine dihydrolase
1652	 58.42	+1	1740922..1742400	-	492	110641866	astD	ECP_1692	-	succinylglutamic semialdehyde dehydrogenase
1653	 55.17	0	1742397..1743431	-	344	110641867	-	ECP_1693	-	arginine succinyltransferase
1654	 55.28	0	1743428..1744648	-	406	110641868	-	ECP_1694	-	bifunctional succinylornithine transaminase/acetylornithine transaminase
1655	 53.60	0	1745082..1745900	+	272	110641869	-	ECP_1695	-	exonuclease III
1656	 47.68	0	1746067..1746777	+	236	110641870	-	ECP_1696	-	hypothetical protein
1657	 48.67	0	1746782..1747459	+	225	110641871	-	ECP_1697	-	hypothetical protein
1658	 50.85	0	1747473..1748180	+	235	110641872	-	ECP_1698	-	hypothetical protein
1659	 56.65	+1	1748180..1748728	+	182	110641873	-	ECP_1699	-	hypothetical protein
1660	 55.10	0	1748738..1749904	+	388	110641874	-	ECP_1700	-	hypothetical protein
1661	 56.51	+1	1749877..1751412	+	511	110641875	-	ECP_1701	-	ABC transporter permease
1662	 52.29	0	1751412..1752065	+	217	110641876	-	ECP_1702	-	ABC transporter ATP-binding protein
1663	 53.72	0	1752368..1753441	+	357	110641877	-	ECP_1703	-	putative thiosulfate sulfurtransferase
1664	 54.27	0	1753450..1754070	-	206	110641878	-	ECP_1704	-	hypothetical protein
1665	 54.66	0	1754157..1754564	+	135	110641879	-	ECP_1705	-	pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
1666	 49.45	0	1754530..1754802	-	90	110641880	-	ECP_1706	-	hypothetical protein
1667	 53.50	0	1755038..1756381	+	447	110641881	-	ECP_1707	-	glutamate dehydrogenase
1668	 43.62	-1	1756437..1758380	-	647	110641882	-	ECP_1708	-	TPR repeat-containing protein
1669	 40.26	-1	1758408..1760357	-	649	110641883	-	ECP_1709	-	TPR repeat-containing protein
1670	 45.09	-1	1760354..1762054	-	566	110641884	-	ECP_1710	-	chaperone protein HscC
1671	 54.44	0	1762422..1764368	-	648	110641885	-	ECP_1711	-	DNA topoisomerase III
1672	 55.36	0	1764373..1765416	-	347	110641886	-	ECP_1712	-	selenophosphate synthetase
1673	 55.62	0	1765533..1766084	-	183	110641887	-	ECP_1713	-	hypothetical protein
1674	 51.91	0	1766245..1768101	+	618	110641888	-	ECP_1714	-	protease 4
1675	 50.05	0	1768268..1769284	+	338	110641889	ansA	ECP_1715	-	cytoplasmic asparaginase I
1676	 53.12	0	1769295..1769936	+	213	110641890	-	ECP_1716	-	nicotinamidase/pyrazinamidase
1677	 45.99	0	1770029..1771387	-	452	110641891	-	ECP_1717	-	metabolite transport protein YdjE
1678	 42.29	-1	1771505..1772263	-	252	110641892	-	ECP_1718	-	transcriptional regulator YdjF
1679	 48.52	0	1772400..1773380	-	326	110641893	-	ECP_1719	-	oxidoreductase YdjG
1680	 44.89	-1	1773390..1774358	-	322	110641894	-	ECP_1720	-	sugar kinase YdjH
1681	 44.92	-1	1774342..1775178	-	278	110641895	-	ECP_1721	-	hypothetical protein
1682	 46.97	0	1775199..1776203	-	334	110641896	-	ECP_1722	-	zinc-type alcohol dehydrogenase-like protein YdjJ
1683	 49.06	0	1776259..1777638	-	459	110641897	-	ECP_1723	-	metabolite transport protein YdjK
1684	 49.95	0	1777665..1778741	-	358	110641898	-	ECP_1724	-	zinc-type alcohol dehydrogenase-like protein YdjL
1685	 45.05	-1	1779111..1779383	-	90	110641899	-	ECP_1725	-	putative cytoplasmic protein
1686	 48.07	0	1779425..1779838	-	137	110641900	-	ECP_1726	-	methionine sulfoxide reductase B
1687	 50.10	0	1780180..1781175	+	331	110641901	-	ECP_1727	-	glyceraldehyde 3-phosphate dehydrogenase A
1688	 49.27	0	1781259..1782143	+	294	110641902	-	ECP_1728	-	aldose 1-epimerase-like protein
1689	 49.94	0	1782194..1783048	-	284	110641903	-	ECP_1729	-	hypothetical protein
1690	 51.81	0	1783138..1783884	-	248	110641904	-	ECP_1730	-	MltA-interacting protein precursor
1691	 49.82	0	1784320..1786254	+	644	110641905	-	ECP_1731	-	hypothetical protein
1692	 49.22	0	1786367..1787650	+	427	110641906	-	ECP_1732	-	hypothetical protein
1693	 38.62	-2	1787797..1789272	+	491	110641907	-	ECP_1733	-	hypothetical protein
1694	 45.47	0	1789453..1790943	+	496	110641908	-	ECP_1734	-	hypothetical protein
1695	 50.99	0	1790986..1791489	+	167	110641909	-	ECP_1735	-	hypothetical protein
1696	 55.93	+1	1791764..1792210	+	148	110641910	-	ECP_1736	-	hypothetical protein
1697	 49.88	0	1792167..1792988	-	273	110641911	-	ECP_1737	-	transcriptional regulator YeaM
1698	 53.47	0	1793085..1794266	+	393	110641912	-	ECP_1738	-	transport protein YeaN
1699	 51.44	0	1794321..1794668	+	115	110641913	-	ECP_1739	-	hypothetical protein
1700	 52.55	0	1794690..1794944	-	84	110641914	-	ECP_1740	-	hypothetical protein
1701	 48.05	0	1795127..1796152	+	341	110641915	-	ECP_1741	-	hypothetical protein
1702	 45.78	0	1796419..1796667	-	82	110641916	-	ECP_1742	-	hypothetical protein
1703	 46.45	0	1796815..1796997	-	60	110641917	-	ECP_1743	-	hypothetical protein
1704	 48.33	0	1797001..1797360	-	119	110641918	-	ECP_1744	-	hypothetical protein
1705	 45.38	0	1797533..1798171	-	212	110641919	-	ECP_1745	-	leucine export protein LeuE
1706	 47.75	0	1798298..1798630	-	110	110641920	-	ECP_1746	-	hypothetical protein
1707	 54.48	0	1798714..1799829	-	371	110641921	-	ECP_1747	-	ribonuclease D
1708	 51.13	0	1799911..1801629	-	572	110641922	-	ECP_1748	-	long-chain-fatty-acid--CoA ligase
1709	 53.61	0	1801801..1802382	-	193	110641923	-	ECP_1749	-	Slp family outer membrane lipoprotein
1710	 55.60	0	1802422..1803117	-	231	110641924	-	ECP_1750	-	protease YeaZ
1711	 55.42	0	1803175..1805085	-	636	110641925	-	ECP_1751	-	ATP-dependent helicase YoaA
1712	 52.30	0	1805214..1805561	+	115	110641926	-	ECP_1752	-	hypothetical protein
1713	 44.00	-1	1805983..1806282	+	99	110641927	-	ECP_1753	-	hypothetical protein
1714	 56.11	+1	1806402..1806581	-	59	110641928	-	ECP_1754	-	hypothetical protein
1715	 51.03	0	1806655..1808016	+	453	110641929	-	ECP_1755	-	para-aminobenzoate synthase component I
1716	 54.92	0	1808020..1808598	+	192	110641930	-	ECP_1756	-	hypothetical protein
50.53	MEAN

5.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.