IslandPathversion 1.0

IslandPath Analysis: Escherichia coli 536



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.53 STD DEV: 5.23
Escherichia coli 536, complete genome - 1..4938920
4620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1369	 48.74	0	1433574..1434008	-	144	110641581	-	ECP_1401	-	putative universal stress protein
1370	 46.38	0	1434149..1435282	-	377	110641582	-	ECP_1402	-	outer membrane protein N precursor
1371	 53.42	0	1435648..1439172	-	1174	110641583	-	ECP_1403	-	pyruvate-flavodoxin oxidoreductase
1372	 55.06	0	1439446..1439712	+	88	110641584	-	ECP_1404	-	hypothetical protein
1373	 47.99	0	1439709..1440131	-	140	110641585	-	ECP_1405	-	heat-inducible protein
1374	 50.30	0	1440242..1441231	-	329	110641586	-	ECP_1406	-	D-lactate dehydrogenase
1375	 51.93	0	1441439..1444078	+	879	110641587	-	ECP_1407	-	hypothetical protein
1376	 43.55	-1	1444075..1444260	+	61	110641588	-	ECP_1408	-	hypothetical protein
1377	 44.53	-1	1444220..1444594	+	124	110641589	-	ECP_1409	-	hypothetical protein
1378	 52.24	0	1444970..1452346	+	2458	110641590	-	ECP_1410	-	putative autotransporter/adhesin
1379	 51.80	0	1452555..1453415	+	286	110641591	-	ECP_1411	-	putative oxidoreductase
1380	 43.56	-1	1453460..1453684	-	74	110641592	-	ECP_1412	-	hypothetical protein
1381	 45.05	-1	1453714..1454319	+	201	110641593	-	ECP_1413	-	putative CDP-alcohol phosphatidyltransferase
1382	 43.02	-1	1454493..1455215	+	240	110641594	-	ECP_1414	-	putative phosphatidate cytidylyltransferase
1383	 51.54	0	1455231..1456988	+	585	110641595	-	ECP_1415	-	hypothetical protein
1384	 50.62	0	1457334..1458293	+	319	110641596	-	ECP_1416	-	putative dual specificity phosphatase
1385	 52.31	0	1458347..1458952	-	201	110641597	-	ECP_1417	-	azoreductase
1386	 53.70	0	1459153..1463055	+	1300	110641598	-	ECP_1418	-	ATP-dependent RNA helicase HrpA
1387	 51.56	0	1463328..1464128	+	266	110641599	-	ECP_1419	-	hypothetical protein
1388	 50.90	0	1464325..1465764	+	479	110641600	-	ECP_1420	-	aldehyde dehydrogenase A
1389	 48.60	0	1465806..1466807	-	333	110641601	-	ECP_1421	-	glyceraldehyde 3-phosphate dehydrogenase C
1390	 48.59	0	1466996..1467526	+	176	110641602	-	ECP_1422	-	cytochrome b561
1391	 45.98	0	1467771..1467944	+	57	110641603	-	ECP_1423	-	hypothetical protein
1392	 50.32	0	1470232..1471155	-	307	110641605	-	ECP_1427	-	LysR family transcriptional regulator
1393	 52.90	0	1471372..1472715	+	447	110641606	-	ECP_1428	-	putative cytoplasmic protein
1394	 51.23	0	1472976..1474595	+	539	110641607	mdoD	ECP_1429	-	glucan biosynthesis protein D
1395	 41.33	-1	1474735..1474959	+	74	110641608	-	ECP_1430	-	hypothetical protein
1396	 43.52	-1	1475022..1475561	+	179	110641609	-	ECP_1431	-	ribosomal-protein-L7/L12-serine acetyltransferase
1397	 47.71	0	1475553..1476533	-	326	110641610	-	ECP_1432	-	hypothetical protein
1398	 53.03	0	1476645..1477649	+	334	110641611	-	ECP_1433	-	potassium-tellurite ethidium and proflavin transporter
1399	 46.13	0	1477646..1478239	+	197	110641612	-	ECP_1434	-	tellurite resistance protein TehB
1400	 44.54	-1	1478542..1479210	+	222	110641613	-	ECP_1435	-	lipoprotein YdcL precursor
1401	 52.76	0	1479245..1480510	-	421	110641614	-	ECP_1436	-	putative benzoate membrane transport protein
1402	 49.53	0	1480509..1481045	+	178	110641615	-	ECP_1437	-	hypothetical protein
1403	 50.70	0	1481076..1483079	+	667	110641616	-	ECP_1438	-	putative peptidase
1404	 49.35	0	1483171..1483401	-	76	110641617	-	ECP_1439	-	hypothetical protein
1405	 46.57	0	1483613..1483816	+	67	110641618	-	ECP_1440	-	hypothetical protein
1406	 50.75	0	1483895..1485301	+	468	110641619	-	ECP_1441	-	GntR family transcriptional regulator
1407	 52.97	0	1485546..1486691	+	381	110641620	-	ECP_1442	-	putative extracellular solute-binding protein YdcS precursor
1408	 54.93	0	1486709..1487722	+	337	110641621	-	ECP_1443	-	ABC transporter ATP-binding protein
1409	 54.46	0	1487723..1488664	+	313	110641622	-	ECP_1444	-	binding-protein-dependent transport system inner membrane component
1410	 54.34	0	1488654..1489448	+	264	110641623	-	ECP_1445	-	hypothetical protein
1411	 53.40	0	1489470..1490894	+	474	110641624	-	ECP_1446	-	gamma-aminobutyraldehyde dehydrogenase
1412	 46.40	0	1491233..1491454	+	73	110641625	-	ECP_1447	-	putative inner membrane protein
1413	 52.56	0	1491540..1491773	+	77	110641626	-	ECP_1448	-	putative cytoplasmic protein
1414	 52.67	0	1491774..1492223	-	149	110641627	-	ECP_1449	-	hypothetical protein
1415	 52.99	0	1492220..1492738	-	172	110641628	-	ECP_1450	-	acetyltransferase YncA
1416	 47.68	0	1492945..1493181	+	78	110641629	-	ECP_1451	-	hypothetical protein
1417	 51.31	0	1493219..1495321	-	700	110641630	-	ECP_1452	-	tonB-dependent receptor YncD precursor
1418	 49.72	0	1495563..1496624	+	353	110641631	-	ECP_1453	-	hypothetical protein
1419	 52.67	0	1496737..1498236	-	499	110641632	-	ECP_1454	-	L-asparagine permease
1420	 47.46	0	1498503..1498679	+	58	110641633	-	ECP_1455	-	glutathione S-transferase
1421	 47.93	0	1498693..1499103	+	136	110641634	-	ECP_1456	-	glutathione S-transferase
1422	 57.54	+1	1499644..1499928	+	94	110641635	-	ECP_1457	-	hypothetical protein
1423	 57.02	+1	1499947..1502352	+	801	110641636	-	ECP_1458	-	Rhs/Vgr-family protein
1424	 32.41	-2	1502342..1503103	+	253	110641637	-	ECP_1459	-	hypothetical protein
1425	 29.44	-2	1503239..1503418	+	59	110641638	-	ECP_1460	-	hypothetical protein
1426	 26.92	-2	1503472..1503939	+	155	110641639	-	ECP_1461	-	hypothetical protein
1427	 35.42	-2	1504052..1504195	+	47	110641640	-	ECP_1462	-	H repeat-containing Rhs element protein
1428	 39.81	-2	1504273..1504488	+	71	110641641	-	ECP_1463	-	hypothetical protein
1429	 52.46	0	1504805..1505374	-	189	110641642	-	ECP_1464	-	hypothetical protein
1430	 50.35	0	1505549..1506394	+	281	110641643	-	ECP_1465	-	N-hydroxyarylamine O-acetyltransferase
1431	 50.56	0	1506490..1507383	-	297	110641644	-	ECP_1466	-	hypothetical protein
1432	 52.57	0	1507463..1508143	-	226	110641645	-	ECP_1467	-	nitrate reductase 2, gamma subunit
1433	 55.17	0	1508140..1508835	-	231	110641646	-	ECP_1468	-	respiratory nitrate reductase 2 delta chain
1434	 53.59	0	1508835..1510379	-	514	110641647	-	ECP_1469	-	respiratory nitrate reductase 2 beta chain
1435	 54.77	0	1510376..1514116	-	1246	110641648	-	ECP_1470	-	respiratory nitrate reductase 2 a chain
1436	 49.32	0	1514211..1515599	-	462	110641649	-	ECP_1471	-	nitrite extrusion protein 2
1437	 50.23	0	1515872..1516753	-	293	110641650	-	ECP_1472	-	hypothetical protein
1438	 53.91	0	1516986..1517573	+	195	110641652	-	ECP_1474	-	formate dehydrogenase, nitrate-inducible, major subunit
1439	 54.44	0	1517622..1520033	+	803	110641653	-	ECP_1475	-	formate dehydrogenase, nitrate-inducible, major subunit
1440	 54.84	0	1520052..1520930	+	292	110641654	-	ECP_1476	-	formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
1441	 49.85	0	1520905..1521576	+	223	110641655	-	ECP_1477	-	formate dehydrogenase-N subunit gamma
1442	 51.93	0	1521805..1522089	-	94	110641656	-	ECP_1478	-	putative HTH-type transcriptional regulator YddM
1443	 48.72	0	1522089..1522361	-	90	110641657	-	ECP_1479	-	hypothetical protein
1444	 53.41	0	1522553..1523563	-	336	110641658	-	ECP_1480	-	alcohol dehydrogenase
1445	 52.00	0	1523697..1525394	-	565	110641659	-	ECP_1481	-	malate dehydrogenase
1446	 44.93	-1	1525551..1525688	-	45	110641660	rpsV	ECP_1482	-	30S ribosomal subunit S22
1447	 45.83	0	1525790..1526005	-	71	110641661	-	ECP_1483	-	biofilm-dependent modulation protein
1448	 49.77	0	1526350..1526781	+	143	110641662	-	ECP_1484	-	osmotically inducible protein C
1449	 49.88	0	1526971..1529370	-	799	110641663	-	ECP_1485	-	cAMP phosphodiesterase
1450	 45.54	0	1529395..1529607	-	70	110641664	-	ECP_1486	-	hypothetical protein
1451	 52.58	0	1529937..1531256	-	439	110641665	-	ECP_1487	-	lipoprotein YddW precursor
1452	 48.24	0	1531387..1532922	-	511	110641666	-	ECP_1488	-	amino acid antiporter
1453	 53.25	0	1533078..1534478	-	466	110641667	-	ECP_1489	-	glutamate decarboxylase beta
1454	 46.70	0	1534840..1537623	-	927	110641668	-	ECP_1490	-	zinc protease PqqL
1455	 46.10	0	1537680..1540052	-	790	110641669	-	ECP_1491	-	hypothetical protein
1456	 43.30	-1	1540090..1541775	-	561	110641670	-	ECP_1492	-	ABC transporter ATP-binding protein
1457	 38.69	-2	1542066..1543223	-	385	110641671	-	ECP_1493	-	hypothetical protein
1458	 44.15	-1	1543275..1544957	-	560	110641672	-	ECP_1494	-	putative sulfatase YdeN precursor
1459	 39.37	-2	1545359..1546120	-	253	110641673	-	ECP_1495	-	transcriptional regulator YdeO
1460	 37.88	-2	1546196..1546393	-	65	110641674	-	ECP_1496	-	hypothetical protein
1461	 49.69	0	1546641..1548920	-	759	110641675	-	ECP_1497	-	putative oxidoreductase
1462	 43.75	-1	1549206..1549493	-	95	110641676	-	ECP_1498	-	putative fimbrial-like protein
1463	 45.16	-1	1549507..1550343	-	278	110641677	-	ECP_1499	-	fimbrial usher protein
1464	 49.55	0	1550384..1551055	+	223	110641678	-	ECP_1500	-	transcriptional regulator
1465	 47.08	0	1551349..1552221	-	290	110641679	-	ECP_1501	-	hypothetical protein
1466	 45.61	0	1552221..1552505	-	94	110641680	-	ECP_1502	-	DNA-binding transcriptional regulator HipB
1467	 54.94	0	1552795..1553553	+	252	110641681	-	ECP_1503	-	trans-aconitate 2-methyltransferase
1468	 47.98	0	1553557..1554471	-	304	110641682	-	ECP_1504	-	hypothetical protein
50.53	MEAN

5.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.