IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
850	 52.78	0	852594..853277	-	227	26246769	ybiH	c0879	-	putative DNA-binding transcriptional regulator
851	 56.31	+1	853494..854855	+	453	26246770	rhlE	c0880	-	ATP-dependent RNA helicase RhlE
852	 47.71	0	855088..855393	-	101	26246772	-	c0882	-	hypothetical protein
853	 54.39	0	855392..857542	+	716	26246773	dinG	c0883	-	ATP-dependent DNA helicase DinG
854	 55.56	0	857570..858532	+	320	26246774	ybiB	c0884	-	hypothetical protein
855	 55.25	0	858673..859758	+	361	26246775	ybiC	c0885	-	hypothetical protein
856	 50.19	0	859986..860246	-	86	26246776	ybiJ	c0886	-	hypothetical protein
857	 50.94	0	860511..860777	-	88	26246778	-	c0888	-	hypothetical protein
858	 53.98	0	860851..861528	-	225	161486274	ybiX	c0889	-	putative hydroxylase
859	 53.26	0	861744..864026	-	760	26246780	ybiL	c0890	-	catecholate siderophore receptor Fiu
860	 45.68	0	864291..864695	-	134	26246781	ybiM	c0891	-	hypothetical protein
861	 52.70	0	864737..865753	+	338	26246782	ybiN	c0892	-	putative SAM-dependent methyltransferase
862	 53.14	0	865750..867975	-	741	161486273	ybiO	c0893	-	hypothetical protein
863	 53.94	0	868092..868814	-	240	26246784	glnQ	c0894	-	glutamine ABC transporter ATP-binding protein
864	 53.33	0	868811..869470	-	219	26246785	glnP	c0895	-	glutamine ABC transporter permease protein
865	 48.46	0	869609..870355	-	248	26246786	glnH	c0896	-	glutamine ABC transporter periplasmic protein
866	 43.75	-1	870282..870473	-	63	26246787	-	c0897	-	hypothetical protein
867	 48.41	0	870759..871262	-	167	161486272	dps	c0898	-	DNA starvation/stationary phase protection protein Dps
868	 53.33	0	871563..872462	-	299	26246789	ybiF	c0899	-	threonine and homoserine efflux system
869	 50.96	0	872797..873318	+	173	26246790	ompX	c0900	-	outer membrane protein X
870	 48.93	0	873368..874951	-	527	26246791	ybiP	c0901	-	hypothetical protein
871	 41.86	-1	875223..875351	-	42	26246792	-	c0902	-	hypothetical protein
872	 54.06	0	875537..876004	+	155	26246793	-	c0903	-	manganese transport regulator MntR
873	 51.47	0	876001..877119	+	372	26246794	ybiR	c0904	-	hypothetical protein
874	 52.88	0	877177..878097	-	306	26246795	ybiS	c0905	-	hypothetical protein
875	 52.67	0	878316..879908	+	530	26246796	ybiT	c0906	-	ABC transporter ATP-binding protein
876	 46.45	0	880108..880923	-	271	26246797	ybiV	c0907	-	hypothetical protein
877	 54.25	0	881069..883501	-	810	26246798	ybiW	c0908	-	putative formate acetyltransferase 3
878	 53.18	0	883507..884433	-	308	26246799	-	c0909	-	putative pyruvate formate-lyase 3 activating enzyme
879	 53.54	0	884537..885199	+	220	161486271	mipB	c0910	-	fructose-6-phosphate aldolase
880	 56.13	+1	885275..886024	-	249	26246801	moeB	c0911	-	molybdopterin biosynthesis protein MoeB
881	 56.23	+1	886024..887259	-	411	26246802	moeA	c0912	-	molybdopterin biosynthesis protein MoeA
882	 56.00	+1	887463..888428	+	321	26246803	ybiK	c0913	-	L-asparaginase
883	 54.07	0	888397..890286	+	629	26246804	yliA	c0914	-	glutathione transporter ATP-binding protein
884	 52.86	0	890150..891844	+	564	26246805	-	c0915	-	putative binding protein yliB precursor
885	 53.75	0	891862..892782	+	306	26246806	yliC	c0916	-	ABC transporter permease
886	 53.29	0	892785..893696	+	303	26246807	yliD	c0917	-	ABC transporter permease
887	 41.12	-1	893873..896221	+	782	26246808	yliE	c0918	-	hypothetical protein
888	 42.81	-1	896229..897557	+	442	26246809	yliF	c0919	-	membrane protein yliF
889	 52.26	0	897604..898929	-	441	26246810	yliG	c0920	-	hypothetical protein
890	 48.18	0	899142..899525	+	127	161486270	bssR	c0921	-	biofilm formation regulatory protein BssR
891	 51.61	0	899636..900751	+	371	26246812	yliI	c0922	-	hypothetical protein
892	 51.97	0	900748..901380	-	210	26246813	yliJ	c0923	-	GST-like protein yliJ
893	 51.31	0	901600..902823	+	407	26246814	dacC	c0924	-	D-alanyl-D-alanine carboxypeptidase fraction C
894	 50.33	0	902870..903628	-	252	26246815	deoR	c0925	-	DNA-binding transcriptional repressor DeoR
895	 51.59	0	903686..904282	-	198	26246816	ybjG	c0926	-	undecaprenyl pyrophosphate phosphatase
896	 52.18	0	904537..905799	+	420	26246817	cmr	c0927	-	multidrug translocase mdfA
897	 52.63	0	905840..906124	-	94	26246818	ybjH	c0928	-	hypothetical protein
898	 46.03	0	906210..907028	-	272	26246819	-	c0929	-	hypothetical protein
899	 53.46	0	907025..908296	-	423	26246820	ybjJ	c0930	-	hypothetical protein
900	 50.97	0	908287..908853	+	188	26246821	ybjK	c0931	-	hypothetical protein
901	 47.29	0	909332..910363	-	343	26246822	intT	c0932	-	integrase for prophage
902	 33.95	-2	910450..911421	-	323	26246823	-	c0933	-	hypothetical protein
903	 38.08	-2	911434..912360	-	308	26246824	-	c0934	-	hypothetical protein
904	 42.34	-1	912449..912670	+	73	26246825	coxT	c0935	-	putative regulator for prophage
905	 49.47	0	912649..913212	+	187	26246826	-	c0936	-	hypothetical protein
906	 49.35	0	913190..913420	+	76	26246827	-	c0937	-	hypothetical protein
907	 43.63	-1	913522..913725	+	67	26246828	-	c0938	-	hypothetical protein
908	 52.08	0	913787..914026	+	79	26246829	-	c0939	-	hypothetical protein
909	 56.02	+1	914038..914253	+	71	26246830	-	c0940	-	hypothetical protein
910	 46.62	0	914250..915107	+	285	26246831	-	c0941	-	DNA adenine methylase
911	 53.08	0	915104..917518	+	804	26246832	-	c0942	-	putative replication protein for prophage
912	 45.42	0	917799..918104	+	101	26246833	-	c0943	-	hypothetical protein
913	 43.28	-1	918325..918525	+	66	26246834	-	c0944	-	hypothetical protein
914	 39.85	-1	918529..919311	+	260	26246835	-	c0945	-	hypothetical protein
915	 35.15	-2	919531..920685	+	384	26246836	-	c0946	-	hypothetical protein
916	 50.29	0	920737..921774	-	345	26246837	-	c0947	-	capsid portal protein
917	 56.76	+1	921771..923537	-	588	26246838	-	c0948	-	terminase, ATPase subunit
918	 50.62	0	923547..923708	-	53	26246839	-	c0949	-	hypothetical protein
919	 56.88	+1	923686..924513	+	275	26246840	-	c0950	-	putative capsid scaffolding protein
920	 56.77	+1	924410..925702	-	430	26246841	-	c0951	-	hypothetical protein
921	 55.71	0	924530..925588	+	352	26246842	-	c0952	-	major capsid protein
922	 59.96	+1	925691..926242	+	183	26246843	-	c0953	-	terminase, endonuclease subunit
923	 59.66	+1	926275..926802	+	175	26246844	-	c0954	-	putative capsid completion protein
924	 60.78	+1	926802..927005	+	67	26246845	-	c0955	-	phage tail protein
925	 54.63	0	927009..927224	+	71	26246846	-	c0956	-	secretory protein
926	 57.12	+1	927205..927717	+	170	26246847	-	c0957	-	Fels-2 prophage: prophage lysozyme
927	 49.52	0	927677..928096	+	139	26246848	-	c0958	-	hypothetical protein
928	 59.67	+1	928093..928521	+	142	26246849	-	c0959	-	putative regulatory protein
929	 54.30	0	928596..929048	+	150	26246850	-	c0960	-	putative phage tail protein
930	 56.45	+1	928963..929520	-	185	26246851	-	c0961	-	hypothetical protein
931	 57.94	+1	929041..929487	+	148	26246852	-	c0962	-	putative phage tail protein
932	 56.48	+1	929556..930134	+	192	26246853	-	c0963	-	putative Phage baseplate assembly protein
933	 56.11	+1	930131..930490	+	119	26246854	-	c0964	-	Phage baseplate assembly protein
934	 56.88	+1	930477..931385	+	302	26246855	-	c0965	-	Phage baseplate assembly protein
935	 54.95	0	931378..931983	+	201	26246856	-	c0966	-	putative phage tail protein
936	 55.15	0	931408..931989	-	193	26246857	-	c0967	-	hypothetical protein
937	 50.56	0	931980..933419	+	479	26246858	-	c0968	-	variable tail fibre protein
938	 35.43	-2	933422..933898	+	158	26246859	yfdK	c0969	-	hypothetical protein
939	 29.84	-2	933882..934913	-	343	26246860	-	c0970	-	hypothetical protein
940	 56.44	+1	935127..936299	+	390	26246861	-	c0971	-	major tail sheath protein
941	 53.88	0	936309..936824	+	171	26246862	-	c0972	-	putative tail fiber component of prophage
942	 53.33	0	936327..936911	-	194	26246863	-	c0973	-	hypothetical protein
943	 52.81	0	936879..937181	+	100	26246864	-	c0974	-	putative phage tail protein
944	 53.51	0	936908..937363	-	151	26246865	-	c0975	-	hypothetical protein
945	 57.45	+1	937542..940385	+	947	26246866	-	c0976	-	hypothetical protein
946	 53.91	0	940382..940867	+	161	26246867	-	c0977	-	putative tail fiber protein of prophage
947	 53.59	0	940864..941964	+	366	26246868	-	c0978	-	putative regulator of late gene expression
948	 45.24	0	942022..942273	+	83	26246869	ogrK	c0979	-	prophage P2 Ogr protein
949	 51.60	0	942509..944194	-	561	26246870	ybjL	c0980	-	hypothetical protein
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.