IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
708	 49.93	0	717314..717988	-	224	26246627	gltK	c0737	-	glutamate/aspartate transport system permease protein gltK
709	 53.17	0	717988..718728	-	246	26246628	gltJ	c0738	-	glutamate/aspartate transport system permease protein gltJ
710	 48.36	0	718898..719875	-	325	26246629	ybeJ	c0739	-	glutamate and aspartate transporter subunit
711	 47.97	0	719941..720063	+	40	26246630	-	c0740	-	hypothetical protein
712	 49.36	0	720260..722137	+	625	26246631	-	c0741	-	hypothetical protein
713	 55.23	0	722215..723753	-	512	26246632	lnt	c0742	-	apolipoprotein N-acyltransferase
714	 51.76	0	723778..724656	-	292	26246633	ybeX	c0743	-	magnesium and cobalt efflux protein corC
715	 51.07	0	724746..725213	-	155	26246634	ybeY	c0744	-	putative metalloprotease
716	 54.35	0	725210..726289	-	359	26246635	ybeZ	c0745	-	PhoH-like protein
717	 50.69	0	726269..726412	+	47	26246636	-	c0746	-	hypothetical protein
718	 54.88	0	726403..727827	-	474	26246637	yleA	c0747	-	hypothetical protein
719	 56.72	+1	727973..729148	+	391	161486284	ubiF	c0748	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
720	 52.01	0	730388..732052	-	554	161486283	asnB	c0749	-	asparagine synthetase B
721	 52.99	0	732308..733060	-	250	26246640	nagD	c0750	-	UMP phosphatase
722	 52.83	0	733108..734328	-	406	26246641	nagC	c0751	-	N-acetylglucosamine repressor
723	 51.87	0	734337..735485	-	382	26246642	nagA	c0752	-	N-acetylglucosamine-6-phosphate deacetylase
724	 48.19	0	735545..736345	-	266	26246643	nagB	c0753	-	glucosamine-6-phosphate deaminase
725	 38.52	-2	736394..736528	-	44	26246644	-	c0754	-	hypothetical protein
726	 54.49	0	736678..738624	+	648	26246645	nagE	c0755	-	N-acetyl glucosamine specific PTS system components IIABC
727	 44.44	-1	738594..738746	-	50	26246646	-	c0756	-	hypothetical protein
728	 51.44	0	738713..739993	-	426	26246647	-	c0757	-	hypothetical protein
729	 54.99	0	740007..740477	-	156	26246648	-	c0758	-	hypthetical protein
730	 56.41	+1	740474..741643	-	389	26246649	-	c0759	-	hypthetical protein
731	 44.40	-1	741679..742437	-	252	26246650	-	c0760	-	hypothetical protein
732	 51.80	0	742497..743384	-	295	26246651	-	c0761	-	putative dihydrodipicolinate synthase
733	 55.61	0	743388..744545	-	385	26246652	-	c0762	-	putative alcohol dehydrogenase
734	 54.47	0	744820..745950	+	376	26246653	-	c0763	-	putative inner membrane protein
735	 52.18	0	745943..746929	+	328	26246654	pdxA	c0764	-	4-hydroxythreonine-4-phosphate dehydrogenase 2
736	 50.39	0	746931..747692	+	253	26246655	-	c0765	-	putative transcriptional regulator
737	 52.79	0	747912..749576	+	554	26246656	glnS	c0766	-	glutaminyl-tRNA synthetase
738	 45.75	0	749807..750265	+	152	26246657	-	c0767	-	hypothetical protein
739	 51.31	0	750730..752136	+	468	26246658	ybfM	c0768	-	hypothetical protein
740	 48.93	0	752186..752512	+	108	26246659	ybfN	c0769	-	lipoprotein ybfN precursor
741	 48.77	0	752596..753042	-	148	26246660	fur	c0770	-	ferric uptake regulator
742	 48.78	0	753331..753861	-	176	161486282	fldA	c0771	-	flavodoxin FldA
743	 53.99	0	754001..754363	-	120	26246662	ybfE	c0772	-	LexA regulated protein
744	 49.80	0	754434..755198	-	254	26246663	ybfF	c0773	-	hypothetical protein
745	 49.63	0	755383..755928	+	181	161486281	seqA	c0774	-	replication initiation regulator SeqA
746	 54.20	0	755903..757594	+	563	26246665	pgm	c0775	-	phosphoglucomutase
747	 51.06	0	757651..758970	-	439	26246666	potE	c0776	-	putrescine transporter
748	 48.78	0	758967..761174	-	735	26246667	speF	c0777	-	ornithine decarboxylase
749	 41.83	-1	761179..761331	-	50	26246668	-	c0778	-	hypothetical protein
750	 56.93	+1	761791..762468	-	225	26246669	kdpE	c0779	-	DNA-binding transcriptional activator KdpE
751	 57.40	+1	762465..765152	-	895	26246670	kdpD	c0780	-	sensor protein KdpD
752	 54.44	0	765142..765738	-	198	26246671	kdpC	c0781	-	potassium-transporting ATPase subunit C
753	 55.78	+1	765723..767771	-	682	26246672	kdpB	c0782	-	potassium-transporting ATPase subunit B
754	 55.08	0	767794..769467	-	557	26246673	kdpA	c0783	-	potassium-transporting ATPase subunit A
755	 48.04	0	769467..769670	-	67	26246674	-	c0784	-	hypothetical protein
756	 51.21	0	769869..770075	+	68	26246675	ybfA	c0785	-	hypothetical protein
757	 49.80	0	770176..770685	+	169	26246676	ybgA	c0786	-	hypothetical protein
758	 53.84	0	770682..772100	+	472	26246677	phrB	c0787	-	deoxyribodipyrimidine photolyase
759	 52.09	0	772142..773623	-	493	26246678	ybgH	c0788	-	putative transporter YbgH
760	 53.90	0	773894..774637	+	247	26246679	ybgI	c0789	-	putative hydrolase-oxidase
761	 57.08	+1	774660..775316	+	218	26246680	ybgJ	c0790	-	hypothetical protein
762	 55.95	+1	775310..776242	+	310	26246681	ybgK	c0791	-	hypothetical protein
763	 56.33	+1	776232..776966	+	244	26246682	ybgL	c0792	-	hypothetical protein
764	 52.65	0	777002..777793	+	263	26246683	nei	c0793	-	endonuclease VIII
765	 55.86	+1	777790..778881	-	363	26246684	abrB	c0794	-	AbrB protein
766	 37.86	-2	779120..779362	-	80	26246685	-	c0795	-	hypothetical protein
767	 50.00	0	779510..780793	-	427	26246686	gltA	c0796	-	type II citrate synthase
768	 46.88	0	780775..780966	+	63	26246687	-	c0797	-	hypothetical protein
769	 49.23	0	781502..781891	+	129	161486280	sdhC	c0798	-	succinate dehydrogenase cytochrome b556 large membrane subunit
770	 54.98	0	781544..781774	-	76	26246689	-	c0799	-	hypothetical protein
771	 50.86	0	781885..782232	+	115	26246690	sdhD	c0800	-	succinate dehydrogenase cytochrome b556 small membrane subunit
772	 55.35	0	782232..783998	+	588	161486279	sdhA	c0801	-	succinate dehydrogenase flavoprotein subunit
773	 51.46	0	784014..784730	+	238	26246692	sdhB	c0802	-	succinate dehydrogenase iron-sulfur subunit
774	 55.46	0	785281..788082	+	933	26246693	kgd	c0803	-	alpha-ketoglutarate decarboxylase
775	 55.42	0	788097..789314	+	405	26246694	sucB	c0804	-	dihydrolipoamide acetyltransferase
776	 54.07	0	789408..790574	+	388	26246695	sucC	c0805	-	succinyl-CoA synthetase subunit beta
777	 53.22	0	790574..791443	+	289	26246696	sucD	c0806	-	succinyl-CoA synthetase subunit alpha
778	 44.58	-1	791683..792642	+	319	26246697	-	c0807	-	hypothetical protein
779	 31.36	-2	792671..793024	+	117	26246698	-	c0808	-	hypothetical protein
780	 38.21	-2	793092..793214	-	40	26246699	-	c0809	-	hypothetical protein
781	 41.50	-1	793232..793378	-	48	26246700	-	c0810	-	hypothetical protein
782	 52.42	0	794125..795696	+	523	26246701	cydA	c0811	-	cytochrome D ubiquinol oxidase subunit I
783	 54.04	0	795712..796851	+	379	26246702	cydB	c0812	-	cytochrome D ubiquinol oxidase subunit II
784	 54.03	0	795766..796881	-	371	26246703	-	c0813	-	hypothetical protein
785	 50.00	0	796979..797272	+	97	26246704	ybgE	c0814	-	hypothetical protein
786	 48.64	0	797422..797826	+	134	26246705	ybgC	c0815	-	acyl-CoA thioester hydrolase YbgC
787	 50.36	0	797823..798515	+	230	26246706	tolQ	c0816	-	colicin uptake protein TolQ
788	 51.52	0	798519..798947	+	142	26246707	tolR	c0817	-	colicin uptake protein TolR
789	 52.53	0	799012..800277	+	421	26246708	tolA	c0818	-	cell envelope integrity inner membrane protein TolA
790	 53.09	0	800407..801702	+	431	26246709	tolB	c0819	-	translocation protein TolB
791	 48.63	0	801671..802291	-	206	26246710	-	c0820	-	hypothetical protein
792	 49.82	0	801713..802258	+	181	26246711	pal	c0821	-	peptidoglycan-associated outer membrane lipoprotein
793	 49.85	0	802268..802933	+	221	26246712	ybgF	c0822	-	hypothetical protein
794	 47.55	0	802857..803060	+	67	26246713	-	c0823	-	hypothetical protein
795	 46.67	0	802905..803204	-	99	26246714	-	c0824	-	hypothetical protein
796	 50.67	0	804206..805249	+	347	26246715	nadA	c0825	-	quinolinate synthetase
797	 48.19	0	805287..806006	+	239	26246716	pnuC	c0826	-	protein pnuC
798	 50.88	0	806003..806401	-	132	26246717	-	c0827	-	hypothetical protein
799	 50.93	0	806488..806919	+	143	26246718	-	c0828	-	hypothetical protein
800	 51.44	0	806505..806885	-	126	26246719	ybgS	c0829	-	hypothetical protein
801	 52.14	0	807201..808253	+	350	26246720	aroG	c0830	-	phospho-2-dehydro-3-deoxyheptonate aldolase
802	 51.69	0	808419..809186	-	255	26246721	gpmA	c0831	-	phosphoglyceromutase
803	 55.14	0	809374..810414	-	346	26246722	galM	c0832	-	aldose 1-epimerase
804	 52.39	0	810408..811556	-	382	26246723	galK	c0833	-	galactokinase
805	 55.49	0	811560..812606	-	348	26246724	galT	c0834	-	galactose-1-phosphate uridylyltransferase
806	 54.47	0	812616..813632	-	338	26246725	galE	c0835	-	UDP-galactose-4-epimerase
807	 52.75	0	813894..815366	-	490	161486278	modF	c0836	-	putative molybdenum transport ATP-binding protein ModF
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.