IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
391	 49.95	0	392279..393247	+	322	26246310	-	c0412	-	putative transcriptional regulator YcjZ
392	 51.01	0	393278..394267	-	329	26246311	-	c0413	-	putative aldo/keto reductase
393	 50.47	0	394294..395145	-	283	26246312	-	c0414	-	2,5-diketo-D-gluconic acid reductase A
394	 51.99	0	395711..399961	+	1416	26246313	eaeH	c0415	-	putative adhesin
395	 43.10	-1	400086..400976	-	296	26246314	ykgA	c0416	-	putative transcriptional regulator YkgA
396	 43.28	-1	401176..402060	+	294	26246315	-	c0417	-	2,5-diketo-D-gluconic acid reductase A
397	 44.78	0	402220..402822	-	200	26246316	ykgB	c0418	-	hypothetical protein
398	 33.73	-2	402825..403076	-	83	26246317	ykgI	c0419	-	hypothetical protein
399	 45.32	0	403170..404495	-	441	161486308	ykgC	c0420	-	pyridine nucleotide-disulfide oxidoreductase
400	 49.89	0	404671..405576	+	301	26246319	ykgD	c0421	-	putative transcriptional regulator YkgD
401	 50.56	0	406102..406821	+	239	26246320	ykgE	c0422	-	hypothetical protein
402	 50.00	0	406832..408259	+	475	26246321	ykgF	c0423	-	putative electron transport protein ykgF
403	 51.87	0	408252..408947	+	231	161486307	ykgG	c0424	-	hypothetical protein
404	 36.77	-2	409190..409858	-	222	26246323	ykgH	c0425	-	hypothetical protein
405	 46.03	0	410042..412372	-	776	26246324	-	c0426	-	hypothetical protein
406	 47.51	0	412381..413142	-	253	26246325	-	c0427	-	hypothetical protein
407	 48.37	0	413296..414000	-	234	26246326	-	c0428	-	hypothetical protein
408	 50.00	0	413972..414127	-	51	26246327	-	c0429	-	hypothetical protein
409	 42.29	-1	414420..415022	-	200	26246328	-	c0430	-	Type 1 fimbriae regulatory protein fimB
410	 57.57	+1	416069..417739	-	556	161486306	betA	c0431	-	choline dehydrogenase
411	 57.79	+1	417753..419228	-	491	26246330	betB	c0432	-	betaine aldehyde dehydrogenase
412	 55.94	+1	419239..419844	-	201	26246331	betI	c0433	-	transcriptional regulator BetI
413	 55.06	0	419955..421988	+	677	26246332	betT	c0434	-	choline transport protein BetT
414	 45.48	0	422858..423952	+	364	26246333	-	c0435	-	hypothetical protein
415	 49.95	0	423994..424926	-	310	26246334	yahB	c0436	-	putative transcriptional regulator YahB
416	 54.02	0	425018..425515	-	165	26246335	yahC	c0437	-	hypothetical protein
417	 39.09	-1	425592..425834	+	80	26246336	-	c0438	-	hypothetical protein
418	 45.87	0	425773..426378	+	201	26246337	yahD	c0439	-	ankyrin repeat-containing protein
419	 46.76	0	426418..427281	+	287	26246338	yahE	c0440	-	hypothetical protein
420	 54.72	0	427271..428818	+	515	26246339	-	c0441	-	hypothetical protein
421	 56.57	+1	430662..431612	+	316	26246340	-	c0444	-	putative carbamate kinase
422	 56.47	+1	431622..433004	+	460	26246341	yahJ	c0445	-	deaminase
423	 46.79	0	433226..433381	-	51	26246342	-	c0446	-	hypothetical protein
424	 52.67	0	433381..434430	+	349	26246343	yahK	c0447	-	hypothetical protein
425	 49.19	0	435312..435986	-	224	26246344	yahN	c0448	-	hypothetical protein
426	 38.41	-2	436133..436408	+	91	26246345	yahO	c0449	-	hypothetical protein
427	 55.20	0	436509..438095	-	528	26246346	prpR	c0450	-	propionate catabolism operon regulatory protein
428	 55.67	0	438334..439224	+	296	26246347	prpB	c0451	-	2-methylisocitrate lyase
429	 55.73	0	439384..440553	+	389	26246348	prpC	c0452	-	methylcitrate synthase
430	 56.34	+1	440587..442038	+	483	26246349	prpD	c0453	-	2-methylcitrate dehydratase
431	 57.55	+1	442078..443964	+	628	26246350	prpE	c0454	-	propionyl-CoA synthetase
432	 54.05	0	444289..445548	+	419	26246351	codB	c0455	-	cytosine permease
433	 52.89	0	445523..446821	+	432	26246352	codA	c0456	-	cytosine deaminase
434	 43.59	-1	446942..447604	-	220	26246353	lacA	c0457	-	galactoside O-acetyltransferase
435	 46.17	0	447619..448872	-	417	26246354	lacY	c0458	-	galactoside permease
436	 56.81	+1	448924..451998	-	1024	26246355	lacZ	c0459	-	beta-D-galactosidase
437	 56.55	+1	452122..452388	-	88	26246356	-	c0460	-	LacI protein
438	 47.41	0	453406..453945	+	179	161486305	yaiL	c0462	-	hypothetical protein
439	 47.28	0	453448..453999	-	183	26246358	-	c0463	-	hypothetical protein
440	 48.32	0	454173..455006	-	277	26246359	yaiM	c0464	-	hypothetical protein
441	 53.06	0	455099..456208	-	369	26246360	adhC	c0465	-	alcohol dehydrogenase class III
442	 53.20	0	456243..456539	-	98	26246361	yaiN	c0466	-	regulator protein FrmR
443	 49.61	0	456705..457478	-	257	26246362	-	c0467	-	hypothetical protein
444	 46.48	0	457480..458004	-	174	26246363	-	c0468	-	putative transferase
445	 50.21	0	458039..459235	-	398	26246364	-	c0469	-	hypothetical protein
446	 42.79	-1	459245..459931	-	228	26246365	-	c0470	-	hypothetical protein
447	 38.46	-2	460376..460570	-	64	26246366	-	c0471	-	hypothetical protein
448	 55.97	+1	460524..461486	+	320	161486304	tauA	c0472	-	taurine transporter substrate binding subunit
449	 55.34	0	461499..462266	+	255	26246368	tauB	c0473	-	taurine transporter ATP-binding subunit
450	 59.37	+1	461900..462214	-	104	26246369	-	c0474	-	hypothetical protein
451	 58.70	+1	462263..463090	+	275	26246370	tauC	c0475	-	taurine transporter subunit
452	 54.34	0	463087..463938	+	283	26246371	tauD	c0476	-	taurine dioxygenase
453	 53.87	0	463978..464985	-	335	26246372	hemB	c0477	-	delta-aminolevulinic acid dehydratase
454	 45.98	0	465478..468465	+	995	26246373	-	c0478	-	putative structural protein
455	 40.21	-1	468506..469174	+	222	26246374	yaiV	c0479	-	putative DNA-binding transcriptional regulator
456	 54.92	0	469175..470332	-	385	26246375	yaiH	c0480	-	beta-lactamase/D-alanine carboxypeptidase
457	 45.13	0	470470..470664	+	64	26246376	-	c0481	-	hypothetical protein
458	 50.94	0	470678..471904	+	408	26246377	sbmA	c0482	-	transport protein
459	 53.97	0	471917..473011	+	364	26246378	yaiW	c0483	-	hypothetical protein
460	 51.46	0	473070..473378	-	102	26246379	yaiY	c0484	-	hypothetical protein
461	 46.67	0	473308..473442	+	44	26246380	-	c0485	-	hypothetical protein
462	 44.35	-1	473506..473850	+	114	26246381	yaiZ	c0486	-	hypothetical protein
463	 51.14	0	473874..474968	-	364	26246382	ddl	c0487	-	D-alanyl-alanine synthetase A
464	 39.84	-1	475046..475168	+	40	26246383	-	c0488	-	hypothetical protein
465	 47.13	0	475431..475691	+	86	26246384	yaiB	c0489	-	hypothetical protein
466	 52.05	0	475723..477207	+	494	26246385	phoA	c0490	-	alkaline phosphatase
467	 48.38	0	477308..477646	+	112	26246386	psiF	c0491	-	hypothetical protein
468	 53.85	0	477748..478863	+	371	26246387	yaiC	c0492	-	diguanylate cyclase AdrA
469	 54.57	0	478880..479689	-	269	161486303	proC	c0493	-	pyrroline-5-carboxylate reductase
470	 55.77	+1	479809..480267	+	152	161486302	yaiI	c0494	-	hypothetical protein
471	 52.38	0	480450..480974	+	174	26246390	aroL	c0495	-	shikimate kinase II
472	 48.44	0	481024..481215	+	63	26246391	yaiA	c0496	-	hypothetical protein
473	 46.26	0	481406..481552	+	48	26246392	-	c0497	-	hypothetical protein
474	 46.61	0	481473..482150	+	225	26246393	aroM	c0498	-	hypothetical protein
475	 51.58	0	482222..482506	+	94	26246394	yaiE	c0499	-	hypothetical protein
476	 42.31	-1	482610..482765	-	51	26246395	-	c0500	-	hypothetical protein
477	 48.58	0	482714..482995	+	93	26246396	ykiA	c0501	-	hypothetical protein
478	 51.75	0	483153..484064	-	303	161486301	rdgC	c0502	-	recombination associated protein
479	 55.34	0	484189..485097	+	302	161486300	-	c0503	-	fructokinase
480	 50.43	0	485366..486634	-	422	26246399	araJ	c0504	-	protein AraJ
481	 53.82	0	486676..489819	-	1047	26246400	sbcC	c0505	-	exonuclease subunit SbcC
482	 52.87	0	489816..491018	-	400	26246401	sbcD	c0506	-	exonuclease subunit SbcD
483	 45.45	0	491004..491135	+	43	26246402	-	c0507	-	hypothetical protein
484	 54.35	0	491208..491897	+	229	26246403	phoB	c0508	-	transcriptional regulator PhoB
485	 53.24	0	491955..493250	+	431	26246404	phoR	c0509	-	phosphate regulon sensor protein
486	 44.00	-1	493463..493612	-	49	26246405	-	c0510	-	hypothetical protein
487	 55.38	0	493657..494976	+	439	26246406	brnQ	c0511	-	branched chain amino acid ABC transporter carrier protein
488	 52.36	0	495049..496425	+	458	26246407	proY	c0512	-	putative proline-specific permease
489	 54.73	0	496581..498398	+	605	26246408	malZ	c0513	-	maltodextrin glucosidase
490	 52.41	0	498403..498984	-	193	161486299	yajB	c0514	-	acyl carrier protein phosphodiesterase
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.