IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
354	 47.10	0	355267..355404	-	45	26246273	-	c0375	-	hypothetical protein
355	 52.67	0	355379..356071	+	230	26246274	yafL	c0376	-	lipoprotein yafL precursor
356	 57.18	+1	356346..358085	-	579	26246275	fhiA	c0377	-	FhiA protein
357	 53.11	0	358027..358815	+	262	26246276	mbhA	c0378	-	hypothetical protein
358	 53.60	0	358886..359941	+	351	26246277	dinP	c0379	-	DNA polymerase IV
359	 43.93	-1	359938..360390	+	150	26246278	yafP	c0380	-	hypothetical protein
360	 53.16	0	360580..361719	+	379	161486312	-	c0381	-	hypothetical protein
361	 54.69	0	361830..362330	+	166	161486311	prfH	c0382	-	peptide chain release factor-like protein
362	 50.82	0	362387..363844	-	485	26246281	pepD	c0383	-	aminoacyl-histidine dipeptidase
363	 51.42	0	364105..364563	+	152	26246282	gpt	c0384	-	xanthine-guanine phosphoribosyltransferase
364	 50.33	0	364237..364689	-	150	26246283	-	c0385	-	hypothetical protein
365	 53.33	0	364655..365899	+	414	26246284	frsA	c0386	-	fermentation/respiration switch protein
366	 50.25	0	365957..366358	+	133	26246285	crl	c0387	-	DNA-binding transcriptional regulator Crl
367	 44.63	0	366397..367458	-	353	26246286	phoE	c0388	-	outer membrane phosphoporin protein E
368	 55.25	0	367741..368844	+	367	161486310	proB	c0389	-	gamma-glutamyl kinase
369	 55.18	0	368856..370109	+	417	26246288	proA	c0390	-	gamma-glutamyl phosphate reductase
370	 45.72	0	370454..370792	+	112	26246289	-	c0391	-	CP4-like integrase
371	 30.67	-2	371227..371751	-	174	26246290	-	c0392	-	hypothetical protein
372	 48.37	0	371877..376007	-	1376	26246291	-	c0393	-	haemoglobin protease
373	 34.34	-2	376320..376517	+	65	26246292	-	c0394	-	hypothetical protein
374	 32.54	-2	376435..376560	+	41	26246293	-	c0395	-	hypothetical protein
375	 47.22	0	376600..376815	+	71	26246294	-	c0396	-	insertion element IS1 1/2/3/5/6 protein insA
376	 47.46	0	377117..377293	+	58	26246295	-	c0397	-	InsB protein
377	 51.37	0	377672..377854	+	60	26246296	-	c0398	-	hypothetical protein
378	 43.74	-1	378117..378731	+	204	26246297	yagU	c0399	-	hypothetical protein
379	 52.78	0	379616..380371	-	251	26246298	yagV	c0400	-	hypothetical protein
380	 51.76	0	380295..381938	-	547	26246299	yagW	c0401	-	hypothetical protein
381	 55.19	0	381928..384453	-	841	26246300	yagX	c0402	-	hypothetical protein
382	 55.23	0	384479..385195	-	238	26246301	yagY	c0403	-	hypothetical protein
383	 52.21	0	385204..385791	-	195	26246302	matB	c0404	-	hypothetical protein
384	 39.76	-1	385866..386456	-	196	26246303	matA	c0405	-	hypothetical protein
385	 43.06	-1	387492..387635	-	47	26246304	rpmJ	c0406	-	50S ribosomal protein L36
386	 46.21	0	387632..387895	-	87	161486309	rpmE2	c0407	-	50S ribosomal protein L31 type B
387	 40.97	-1	388835..388978	-	47	26246306	-	c0408	-	hypothetical protein
388	 44.24	-1	388990..389979	-	329	26246307	-	c0409	-	putative oxidoreductase
389	 45.49	0	390151..391071	-	306	26246308	-	c0410	-	hypothetical protein
390	 42.53	-1	391165..392154	+	329	26246309	-	c0411	-	LysR family transcriptional regulator
391	 49.95	0	392279..393247	+	322	26246310	-	c0412	-	putative transcriptional regulator YcjZ
392	 51.01	0	393278..394267	-	329	26246311	-	c0413	-	putative aldo/keto reductase
393	 50.47	0	394294..395145	-	283	26246312	-	c0414	-	2,5-diketo-D-gluconic acid reductase A
394	 51.99	0	395711..399961	+	1416	26246313	eaeH	c0415	-	putative adhesin
395	 43.10	-1	400086..400976	-	296	26246314	ykgA	c0416	-	putative transcriptional regulator YkgA
396	 43.28	-1	401176..402060	+	294	26246315	-	c0417	-	2,5-diketo-D-gluconic acid reductase A
397	 44.78	0	402220..402822	-	200	26246316	ykgB	c0418	-	hypothetical protein
398	 33.73	-2	402825..403076	-	83	26246317	ykgI	c0419	-	hypothetical protein
399	 45.32	0	403170..404495	-	441	161486308	ykgC	c0420	-	pyridine nucleotide-disulfide oxidoreductase
400	 49.89	0	404671..405576	+	301	26246319	ykgD	c0421	-	putative transcriptional regulator YkgD
401	 50.56	0	406102..406821	+	239	26246320	ykgE	c0422	-	hypothetical protein
402	 50.00	0	406832..408259	+	475	26246321	ykgF	c0423	-	putative electron transport protein ykgF
403	 51.87	0	408252..408947	+	231	161486307	ykgG	c0424	-	hypothetical protein
404	 36.77	-2	409190..409858	-	222	26246323	ykgH	c0425	-	hypothetical protein
405	 46.03	0	410042..412372	-	776	26246324	-	c0426	-	hypothetical protein
406	 47.51	0	412381..413142	-	253	26246325	-	c0427	-	hypothetical protein
407	 48.37	0	413296..414000	-	234	26246326	-	c0428	-	hypothetical protein
408	 50.00	0	413972..414127	-	51	26246327	-	c0429	-	hypothetical protein
409	 42.29	-1	414420..415022	-	200	26246328	-	c0430	-	Type 1 fimbriae regulatory protein fimB
410	 57.57	+1	416069..417739	-	556	161486306	betA	c0431	-	choline dehydrogenase
411	 57.79	+1	417753..419228	-	491	26246330	betB	c0432	-	betaine aldehyde dehydrogenase
412	 55.94	+1	419239..419844	-	201	26246331	betI	c0433	-	transcriptional regulator BetI
413	 55.06	0	419955..421988	+	677	26246332	betT	c0434	-	choline transport protein BetT
414	 45.48	0	422858..423952	+	364	26246333	-	c0435	-	hypothetical protein
415	 49.95	0	423994..424926	-	310	26246334	yahB	c0436	-	putative transcriptional regulator YahB
416	 54.02	0	425018..425515	-	165	26246335	yahC	c0437	-	hypothetical protein
417	 39.09	-1	425592..425834	+	80	26246336	-	c0438	-	hypothetical protein
418	 45.87	0	425773..426378	+	201	26246337	yahD	c0439	-	ankyrin repeat-containing protein
419	 46.76	0	426418..427281	+	287	26246338	yahE	c0440	-	hypothetical protein
420	 54.72	0	427271..428818	+	515	26246339	-	c0441	-	hypothetical protein
421	 56.57	+1	430662..431612	+	316	26246340	-	c0444	-	putative carbamate kinase
422	 56.47	+1	431622..433004	+	460	26246341	yahJ	c0445	-	deaminase
423	 46.79	0	433226..433381	-	51	26246342	-	c0446	-	hypothetical protein
424	 52.67	0	433381..434430	+	349	26246343	yahK	c0447	-	hypothetical protein
425	 49.19	0	435312..435986	-	224	26246344	yahN	c0448	-	hypothetical protein
426	 38.41	-2	436133..436408	+	91	26246345	yahO	c0449	-	hypothetical protein
427	 55.20	0	436509..438095	-	528	26246346	prpR	c0450	-	propionate catabolism operon regulatory protein
428	 55.67	0	438334..439224	+	296	26246347	prpB	c0451	-	2-methylisocitrate lyase
429	 55.73	0	439384..440553	+	389	26246348	prpC	c0452	-	methylcitrate synthase
430	 56.34	+1	440587..442038	+	483	26246349	prpD	c0453	-	2-methylcitrate dehydratase
431	 57.55	+1	442078..443964	+	628	26246350	prpE	c0454	-	propionyl-CoA synthetase
432	 54.05	0	444289..445548	+	419	26246351	codB	c0455	-	cytosine permease
433	 52.89	0	445523..446821	+	432	26246352	codA	c0456	-	cytosine deaminase
434	 43.59	-1	446942..447604	-	220	26246353	lacA	c0457	-	galactoside O-acetyltransferase
435	 46.17	0	447619..448872	-	417	26246354	lacY	c0458	-	galactoside permease
436	 56.81	+1	448924..451998	-	1024	26246355	lacZ	c0459	-	beta-D-galactosidase
437	 56.55	+1	452122..452388	-	88	26246356	-	c0460	-	LacI protein
438	 47.41	0	453406..453945	+	179	161486305	yaiL	c0462	-	hypothetical protein
439	 47.28	0	453448..453999	-	183	26246358	-	c0463	-	hypothetical protein
440	 48.32	0	454173..455006	-	277	26246359	yaiM	c0464	-	hypothetical protein
441	 53.06	0	455099..456208	-	369	26246360	adhC	c0465	-	alcohol dehydrogenase class III
442	 53.20	0	456243..456539	-	98	26246361	yaiN	c0466	-	regulator protein FrmR
443	 49.61	0	456705..457478	-	257	26246362	-	c0467	-	hypothetical protein
444	 46.48	0	457480..458004	-	174	26246363	-	c0468	-	putative transferase
445	 50.21	0	458039..459235	-	398	26246364	-	c0469	-	hypothetical protein
446	 42.79	-1	459245..459931	-	228	26246365	-	c0470	-	hypothetical protein
447	 38.46	-2	460376..460570	-	64	26246366	-	c0471	-	hypothetical protein
448	 55.97	+1	460524..461486	+	320	161486304	tauA	c0472	-	taurine transporter substrate binding subunit
449	 55.34	0	461499..462266	+	255	26246368	tauB	c0473	-	taurine transporter ATP-binding subunit
450	 59.37	+1	461900..462214	-	104	26246369	-	c0474	-	hypothetical protein
451	 58.70	+1	462263..463090	+	275	26246370	tauC	c0475	-	taurine transporter subunit
452	 54.34	0	463087..463938	+	283	26246371	tauD	c0476	-	taurine dioxygenase
453	 53.87	0	463978..464985	-	335	26246372	hemB	c0477	-	delta-aminolevulinic acid dehydratase
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.