version 1.0
Escherichia coli CFT073, complete genome - 1..5231428 5339 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3746 47.65 0 3690546..3690950 + 134 26249690 yqjF c3859 - hypothetical protein 3747 50.51 0 3692270..3692659 + 129 26249691 yhaH c3862 - hypothetical protein 3748 56.19 +1 3692693..3693589 - 298 26249692 yhaJ c3863 - putative transcriptional regulator YhaJ 3749 52.71 0 3693694..3694395 + 233 26249693 yhaK c3864 - hypothetical protein 3750 51.16 0 3694153..3694281 - 42 26249694 - c3865 - hypothetical protein 3751 50.88 0 3694412..3694582 + 56 26249695 yhaL c3866 - hypothetical protein 3752 56.22 +1 3694716..3696026 - 436 26249696 - c3867 - hypothetical protein 3753 53.10 0 3697665..3699035 - 456 26249697 - c3870 - L-serine dehydratase 1 3754 51.88 0 3699101..3699553 - 150 26249698 yhaR c3871 - hypothetical protein 3755 52.68 0 3699504..3701798 - 764 26249699 tdcE c3872 - keto-acid formate acetyltransferase 3756 41.83 -1 3701832..3701984 - 50 26249700 - c3873 - hypothetical protein 3757 48.95 0 3703066..3704397 - 443 26249701 tdcC c3874 - threonine/serine transporter TdcC 3758 46.26 0 3704419..3705408 - 329 26249702 tdcB c3875 - threonine dehydratase 3759 42.28 -1 3705507..3706445 - 312 26249703 tdcA c3876 - DNA-binding transcriptional activator TdcA 3760 31.30 -2 3706634..3706978 + 114 161486114 tdcR c3877 - DNA-binding transcriptional activator TdcR 3761 35.66 -2 3707204..3707332 + 42 26249705 - c3878 - hypothetical protein 3762 53.49 0 3707944..3709089 - 381 161486113 yhaD c3879 - glycerate kinase I 3763 53.31 0 3709186..3710076 - 296 161486112 garR c3880 - tartronate semialdehyde reductase 3764 52.27 0 3710106..3710876 - 256 26249708 yhaF c3881 - alpha-dehydro-beta-deoxy-D-glucarate aldolase 3765 51.31 0 3710892..3712226 - 444 26249709 yhaU c3882 - galactarate transporter 3766 52.54 0 3712601..3714172 + 523 26249710 yhaG c3883 - D-galactarate dehydratase 3767 47.62 0 3714321..3714656 + 111 26249711 sohA c3884 - putative regulator PrlF 3768 44.52 -1 3714656..3715120 + 154 26249712 yhaV c3885 - hypothetical protein 3769 51.73 0 3715175..3715984 - 269 26249713 agaR c3886 - DNA-binding transcriptional regulator AgaR 3770 55.19 0 3716233..3717513 + 426 26249714 agaZ c3887 - putative tagatose 6-phosphate kinase agaZ 3771 50.59 0 3717500..3718009 + 169 26249715 agaV c3888 - N-acetylgalactosamine-specific PTS system transporter subunit IIB 3772 56.28 +1 3718020..3718799 + 259 26249716 - c3889 - putative phosphotransferase system enzyme subunit 3773 52.99 0 3718783..3719667 + 294 26249717 - c3890 - PTS system, N-acetylgalactosamine-specific IID component 3774 53.10 0 3719685..3720119 + 144 26249718 - c3891 - putative phosphotransferase system enzyme subunit 3775 57.92 +1 3720095..3721249 + 384 26249719 - c3892 - putative N-acetylgalctosamine-6-phosphate deacetylase 3776 56.88 +1 3721598..3722752 + 384 26249720 agaS c3893 - putative tagatose-6-phosphate ketose/aldose isomerase 3777 52.50 0 3722765..3723625 + 286 26249721 kbaY c3894 - tagatose-bisphosphate aldolase 3778 43.82 -1 3723792..3724268 + 158 26249722 agaB c3895 - N-acetylgalactosamine-specific PTS system transporter subunit IIB 3779 51.00 0 3724307..3725110 + 267 26249723 agaC c3896 - N-acetylgalactosamine-specific PTS system transporter subunit IIC 3780 48.90 0 3725031..3725891 + 286 26249724 agaD c3897 - N-acetylgalactosamine-specific PTS system transporter subunit IID 3781 50.65 0 3725892..3726659 + 255 26249725 agaI c3898 - galactosamine-6-phosphate isomerase 3782 53.82 0 3726709..3727572 - 287 26249726 yraL c3899 - hypothetical protein 3783 53.54 0 3727512..3729674 + 720 26249727 yraM c3900 - hypothetical protein 3784 54.80 0 3729632..3730027 + 131 26249728 yraN c3901 - hypothetical protein 3785 50.79 0 3729896..3730021 - 41 26249729 - c3902 - hypothetical protein 3786 49.92 0 3730047..3730637 + 196 26249730 yraO c3903 - DnaA initiator-associating protein DiaA 3787 53.82 0 3730647..3731222 + 191 26249731 yraP c3904 - hypothetical protein 3788 57.25 +1 3731335..3732375 - 346 26249732 yraQ c3905 - hypothetical protein 3789 54.72 0 3732448..3733083 - 211 26249733 yraR c3906 - hypothetical protein 3790 53.66 0 3733125..3733547 - 140 26249734 yhbP c3907 - hypothetical protein 3791 54.13 0 3733598..3733900 + 100 26249735 yhbQ c3908 - GIY-YIG nuclease superfamily protein 3792 55.16 0 3733887..3734390 - 167 26249736 yhbS c3909 - acetyltransferase YhbS 3793 50.82 0 3734384..3734932 - 182 26249737 yhbT c3910 - hypothetical protein 3794 56.30 +1 3735090..3736112 + 340 26249738 yhbU c3911 - putative protease yhbU precursor 3795 55.85 +1 3736103..3736999 + 298 26249739 yhbV c3912 - hypothetical protein 3796 55.75 +1 3737080..3738087 + 335 26249740 yhbW c3913 - hypothetical protein 3797 53.25 0 3738206..3739450 - 414 26249741 mtr c3914 - tryptophan permease 3798 38.41 -2 3739466..3739603 + 45 26249742 - c3915 - hypothetical protein 3799 55.61 0 3739604..3741493 - 629 161486111 deaD c3916 - ATP-dependent RNA helicase DeaD 3800 48.43 0 3741630..3741788 + 52 26249744 - c3917 - hypothetical protein 3801 48.36 0 3741673..3742557 - 294 26249745 yhbM c3918 - lipoprotein NlpI 3802 53.49 0 3742603..3744825 + 740 26249746 - c3919 - hypothetical protein 3803 53.04 0 3742666..3744888 - 740 26249747 pnp c3920 - polynucleotide phosphorylase/polyadenylase 3804 51.85 0 3745048..3745317 - 89 26249748 rpsO c3921 - 30S ribosomal protein S15 3805 52.80 0 3745466..3746410 - 314 26249749 truB c3922 - tRNA pseudouridine synthase B 3806 52.99 0 3746410..3746811 - 133 161486110 rbfA c3923 - ribosome-binding factor A 3807 53.20 0 3746975..3749647 - 890 26249751 infB c3924 - translation initiation factor IF-2 3808 53.13 0 3749504..3750973 + 489 26249752 - c3925 - hypothetical protein 3809 52.55 0 3749672..3751159 - 495 26249753 nusA c3926 - transcription elongation factor NusA 3810 48.79 0 3751187..3751639 - 150 161486109 yhbC c3927 - hypothetical protein 3811 52.38 0 3752270..3753613 + 447 26249756 argG c3929 - argininosuccinate synthase 3812 42.86 -1 3753621..3755279 - 552 26249757 yhbX c3930 - Outer-membrane protein yhbX precursor 3813 50.15 0 3755804..3756136 - 110 161486108 secG c3931 - preprotein translocase subunit SecG 3814 54.19 0 3756364..3757701 - 445 26249759 glmM c3932 - phosphoglucosamine mutase 3815 51.47 0 3757694..3758542 - 282 161486107 folP c3933 - dihydropteroate synthase 3816 40.74 -1 3760536..3760670 + 44 26249761 - c3935 - hypothetical protein 3817 50.48 0 3760667..3761296 - 209 26249762 rrmJ c3936 - 23S rRNA methyltransferase J 3818 48.64 0 3761422..3761715 + 97 26249763 yhbY c3937 - RNA-binding protein YhbY 3819 48.64 0 3761871..3762347 - 158 26249764 greA c3938 - transcription elongation factor GreA 3820 52.51 0 3762596..3764029 + 477 26249765 dacB c3939 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 3821 52.94 0 3764070..3765242 - 390 26249766 obgE c3940 - GTPase ObgE 3822 52.48 0 3765258..3766223 - 321 26249767 yhbE c3941 - putative transport protein YhbE 3823 50.00 0 3766350..3766607 - 85 26249768 rpmA c3942 - 50S ribosomal protein L27 3824 56.35 +1 3766437..3766562 + 41 26249769 - c3943 - hypothetical protein 3825 45.05 0 3766601..3767146 + 181 26249770 - c3944 - hypothetical protein 3826 52.67 0 3767198..3768169 + 323 26249771 ispB c3945 - octaprenyl diphosphate synthase 3827 49.82 0 3768402..3768680 + 92 26249772 nlp c3946 - DNA-binding transcriptional regulator Nlp 3828 53.49 0 3768728..3769987 - 419 26249773 murA c3947 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3829 50.37 0 3770042..3770311 - 89 26249774 yrbA c3948 - hypothetical protein 3830 47.95 0 3770108..3770449 + 113 26249775 - c3949 - hypothetical protein 3831 51.28 0 3770456..3770845 - 129 26249776 yrbB c3950 - hypothetical protein 3832 52.67 0 3770737..3771372 + 211 26249777 - c3951 - hypothetical protein 3833 52.04 0 3770749..3771384 - 211 26249778 yrbC c3952 - hypothetical protein 3834 49.21 0 3771403..3771969 - 188 26249779 yrbD c3953 - hypothetical protein 3835 54.92 0 3771959..3772741 - 260 26249780 yrbE c3954 - hypothetical protein 3836 54.57 0 3772749..3773558 - 269 26249781 yrbF c3955 - putative ABC transporter ATP-binding protein YrbF 3837 51.43 0 3773768..3774745 + 325 26249782 yrbG c3956 - putative calcium/sodium:proton antiporter 3838 51.79 0 3774738..3775745 + 335 26249783 - c3957 - D-arabinose 5-phosphate isomerase 3839 52.56 0 3775766..3776332 + 188 26249784 yrbI c3958 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3840 46.53 0 3776329..3776904 + 191 26249785 yrbK c3959 - hypothetical protein 3841 49.05 0 3776852..3777430 + 192 26249786 yhbN c3960 - hypothetical protein 3842 54.41 0 3777437..3778162 + 241 26249787 yhbG c3961 - putative ABC transporter ATP-binding protein YhbG 3843 52.86 0 3778210..3779643 + 477 26249788 rpoN c3962 - RNA polymerase factor sigma-54 3844 44.79 0 3779666..3779953 + 95 26249789 yhbH c3963 - putative sigma(54) modulation protein 3845 51.74 0 3780047..3780562 + 171 26249790 ptsN c3964 - sugar-specific enzyme IIA component of PTS 50.18 MEAN 5.55 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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