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Escherichia coli CFT073, complete genome - 1..5231428 5339 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3685 43.17 -1 3631437..3632066 + 209 26249629 yqiJ c3798 - hypothetical protein 3686 50.24 0 3632093..3633754 + 553 26249630 yqiK c3799 - hypothetical protein 3687 55.65 0 3634173..3635606 - 477 26249631 - c3800 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3688 55.79 +1 3635654..3638494 - 946 161486119 glnE c3801 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3689 54.85 0 3638517..3639845 - 442 26249633 ygiF c3802 - hypothetical protein 3690 46.14 0 3639888..3640340 - 150 26249634 - c3803 - putative transposase 3691 50.58 0 3640353..3641558 + 401 26249635 ydcM c3804 - hypothetical protein 3692 52.01 0 3641901..3642521 + 206 26249636 ygiM c3805 - putative signal transduction protein 3693 56.01 +1 3642585..3643823 + 412 26249637 cca c3806 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3694 52.85 0 3643903..3644727 - 274 26249638 uppP c3807 - undecaprenyl pyrophosphate phosphatase 3695 51.08 0 3644815..3645186 - 123 26249639 folB c3808 - bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3696 53.40 0 3645288..3645905 + 205 26249640 ygiH c3809 - putative glycerol-3-phosphate acyltransferase PlsY 3697 49.03 0 3645918..3646898 - 326 26249641 ygiP c3810 - transcriptional activator TtdR 3698 35.77 -2 3646881..3647003 + 40 26249642 - c3811 - hypothetical protein 3699 53.29 0 3647057..3647968 + 303 26249643 ttdA c3812 - tartrate dehydratase subunit alpha 3700 53.63 0 3647965..3648570 + 201 26249644 ttdB c3813 - L(+)-tartrate dehydratase subunit beta 3701 54.58 0 3648618..3650081 + 487 26249645 ygjE c3814 - putative tartrate carrier/transporter 3702 56.41 +1 3650124..3651137 - 337 26249646 ygjD c3815 - O-sialoglycoprotein endopeptidase 3703 51.85 0 3651375..3651590 + 71 26249647 rpsU c3816 - 30S ribosomal protein S21 3704 52.35 0 3651701..3653446 + 581 26249648 dnaG c3817 - DNA primase 3705 53.66 0 3653460..3653582 + 40 26249649 - c3818 - hypothetical protein 3706 52.30 0 3653641..3654747 + 368 26249650 - c3819 - hypothetical protein 3707 53.83 0 3654441..3655538 - 365 26249651 - c3820 - hypothetical protein 3708 54.12 0 3654744..3655484 + 246 26249652 rpoD c3821 - RpoD protein 3709 53.65 0 3655562..3656068 - 168 26249653 ygjF c3822 - G/U mismatch-specific DNA glycosylase 3710 56.67 +1 3656322..3657101 - 259 26249654 yqjH c3823 - hypothetical protein 3711 53.53 0 3657374..3657997 + 207 26249655 yqjI c3824 - hypothetical protein 3712 55.10 0 3658151..3659671 - 506 26249656 aer c3825 - aerotaxis receptor 3713 38.76 -2 3659862..3659990 - 42 26249657 - c3826 - hypothetical protein 3714 46.86 0 3659947..3660153 + 68 26249658 - c3827 - hypothetical protein 3715 54.73 0 3660062..3661468 + 468 161486118 ygjG c3828 - putrescine--2-oxoglutarate aminotransferase 3716 51.09 0 3661452..3661862 + 136 26249660 - c3829 - hypothetical protein 3717 51.95 0 3661510..3661842 - 110 26249661 ygjH c3830 - hypothetical protein 3718 45.90 0 3661949..3662131 + 60 26249662 - c3831 - hypothetical protein 3719 51.12 0 3662061..3663044 + 327 26249663 ebgR c3832 - DNA-binding transcriptional repressor EbgR 3720 54.38 0 3663228..3666320 + 1030 161486117 ebgA c3833 - cryptic beta-D-galactosidase subunit alpha 3721 45.11 0 3666317..3666766 + 149 26249665 ebgC c3834 - cryptic beta-D-galactosidase subunit beta 3722 43.26 -1 3666617..3666757 - 46 26249666 - c3835 - hypothetical protein 3723 49.58 0 3666829..3668262 + 477 26249667 ygjI c3836 - putative transporter YgjI 3724 52.10 0 3668396..3669466 + 356 26249668 ygjJ c3837 - hypothetical protein 3725 54.38 0 3669483..3671834 + 783 26249669 ygjK c3838 - putative glycosyl hydrolase 3726 56.71 +1 3672060..3674078 + 672 26249670 ygjL c3839 - 2,4-dienoyl-CoA reductase 3727 48.44 0 3674123..3674539 - 138 26249671 - c3840 - hypothetical protein 3728 40.35 -1 3674536..3674706 - 56 26249672 - c3841 - hypothetical protein 3729 54.00 0 3674810..3675946 - 378 26249673 ygjO c3842 - putative ribosomal RNA small subunit methyltransferase D 3730 51.85 0 3675995..3676534 + 179 26249674 ygjP c3843 - hypothetical protein 3731 50.14 0 3676602..3677303 + 233 26249675 ygjQ c3844 - hypothetical protein 3732 51.84 0 3677364..3678368 + 334 26249676 ygjR c3845 - oxidoreductase ygjR 3733 53.21 0 3678652..3679617 + 321 26249677 ygjT c3846 - hypothetical protein 3734 54.62 0 3679941..3681185 + 414 26249678 ygjU c3847 - serine/threonine transporter SstT 3735 50.36 0 3681189..3681740 - 183 26249679 ygjV c3848 - hypothetical protein 3736 54.23 0 3681823..3683310 - 495 26249680 uxaA c3849 - Altronate hydrolase 3737 53.79 0 3683325..3684737 - 470 161486116 uxaC c3850 - glucuronate isomerase 3738 53.77 0 3685100..3686518 + 472 26249682 exuT c3851 - hexuronate transporter 3739 50.84 0 3686648..3687424 + 258 161486115 exuR c3852 - DNA-binding transcriptional repressor ExuR 3740 50.98 0 3687769..3688431 + 220 26249684 yqjA c3853 - hypothetical protein 3741 53.65 0 3688435..3688818 + 127 26249685 yqjB c3854 - hypothetical protein 3742 47.66 0 3688950..3689333 + 127 26249686 yqjC c3855 - hypothetical protein 3743 54.25 0 3689371..3689676 + 101 26249687 yqjD c3856 - hypothetical protein 3744 54.81 0 3689679..3690083 + 134 26249688 yqjE c3857 - hypothetical protein 3745 56.00 +1 3690073..3690372 + 99 26249689 yqjK c3858 - hypothetical protein 3746 47.65 0 3690546..3690950 + 134 26249690 yqjF c3859 - hypothetical protein 3747 50.51 0 3692270..3692659 + 129 26249691 yhaH c3862 - hypothetical protein 3748 56.19 +1 3692693..3693589 - 298 26249692 yhaJ c3863 - putative transcriptional regulator YhaJ 3749 52.71 0 3693694..3694395 + 233 26249693 yhaK c3864 - hypothetical protein 3750 51.16 0 3694153..3694281 - 42 26249694 - c3865 - hypothetical protein 3751 50.88 0 3694412..3694582 + 56 26249695 yhaL c3866 - hypothetical protein 3752 56.22 +1 3694716..3696026 - 436 26249696 - c3867 - hypothetical protein 3753 53.10 0 3697665..3699035 - 456 26249697 - c3870 - L-serine dehydratase 1 3754 51.88 0 3699101..3699553 - 150 26249698 yhaR c3871 - hypothetical protein 3755 52.68 0 3699504..3701798 - 764 26249699 tdcE c3872 - keto-acid formate acetyltransferase 3756 41.83 -1 3701832..3701984 - 50 26249700 - c3873 - hypothetical protein 3757 48.95 0 3703066..3704397 - 443 26249701 tdcC c3874 - threonine/serine transporter TdcC 3758 46.26 0 3704419..3705408 - 329 26249702 tdcB c3875 - threonine dehydratase 3759 42.28 -1 3705507..3706445 - 312 26249703 tdcA c3876 - DNA-binding transcriptional activator TdcA 3760 31.30 -2 3706634..3706978 + 114 161486114 tdcR c3877 - DNA-binding transcriptional activator TdcR 3761 35.66 -2 3707204..3707332 + 42 26249705 - c3878 - hypothetical protein 3762 53.49 0 3707944..3709089 - 381 161486113 yhaD c3879 - glycerate kinase I 3763 53.31 0 3709186..3710076 - 296 161486112 garR c3880 - tartronate semialdehyde reductase 3764 52.27 0 3710106..3710876 - 256 26249708 yhaF c3881 - alpha-dehydro-beta-deoxy-D-glucarate aldolase 3765 51.31 0 3710892..3712226 - 444 26249709 yhaU c3882 - galactarate transporter 3766 52.54 0 3712601..3714172 + 523 26249710 yhaG c3883 - D-galactarate dehydratase 3767 47.62 0 3714321..3714656 + 111 26249711 sohA c3884 - putative regulator PrlF 3768 44.52 -1 3714656..3715120 + 154 26249712 yhaV c3885 - hypothetical protein 3769 51.73 0 3715175..3715984 - 269 26249713 agaR c3886 - DNA-binding transcriptional regulator AgaR 3770 55.19 0 3716233..3717513 + 426 26249714 agaZ c3887 - putative tagatose 6-phosphate kinase agaZ 3771 50.59 0 3717500..3718009 + 169 26249715 agaV c3888 - N-acetylgalactosamine-specific PTS system transporter subunit IIB 3772 56.28 +1 3718020..3718799 + 259 26249716 - c3889 - putative phosphotransferase system enzyme subunit 3773 52.99 0 3718783..3719667 + 294 26249717 - c3890 - PTS system, N-acetylgalactosamine-specific IID component 3774 53.10 0 3719685..3720119 + 144 26249718 - c3891 - putative phosphotransferase system enzyme subunit 3775 57.92 +1 3720095..3721249 + 384 26249719 - c3892 - putative N-acetylgalctosamine-6-phosphate deacetylase 3776 56.88 +1 3721598..3722752 + 384 26249720 agaS c3893 - putative tagatose-6-phosphate ketose/aldose isomerase 3777 52.50 0 3722765..3723625 + 286 26249721 kbaY c3894 - tagatose-bisphosphate aldolase 3778 43.82 -1 3723792..3724268 + 158 26249722 agaB c3895 - N-acetylgalactosamine-specific PTS system transporter subunit IIB 3779 51.00 0 3724307..3725110 + 267 26249723 agaC c3896 - N-acetylgalactosamine-specific PTS system transporter subunit IIC 3780 48.90 0 3725031..3725891 + 286 26249724 agaD c3897 - N-acetylgalactosamine-specific PTS system transporter subunit IID 3781 50.65 0 3725892..3726659 + 255 26249725 agaI c3898 - galactosamine-6-phosphate isomerase 3782 53.82 0 3726709..3727572 - 287 26249726 yraL c3899 - hypothetical protein 3783 53.54 0 3727512..3729674 + 720 26249727 yraM c3900 - hypothetical protein 3784 54.80 0 3729632..3730027 + 131 26249728 yraN c3901 - hypothetical protein 50.18 MEAN 5.55 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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