IslandPathversion 1.0

IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.18 STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3472	 56.74	+1	3427964..3428356	+	130	26249415	-	c3580	-	hypothetical protein
3473	 56.67	+1	3428529..3428678	-	49	26249416	-	c3581	-	hypothetical protein
3474	 38.04	-2	3428779..3429330	-	183	26249417	papX	c3582	-	PapX protein
3475	 43.13	-1	3429593..3430603	-	336	26249418	papG	c3583	-	PapG protein
3476	 44.82	0	3430647..3431177	-	176	26249419	papF	c3584	-	PapF protein
3477	 39.07	-1	3431222..3431761	-	179	26249420	papE	c3585	-	PapE protein
3478	 54.26	0	3431770..3432309	-	179	26249421	papK	c3586	-	PapK protein
3479	 54.15	0	3431915..3432529	+	204	26249422	-	c3587	-	hypothetical protein
3480	 54.81	0	3432316..3432897	-	193	26249423	papJ	c3588	-	PapJ protein
3481	 45.05	0	3432934..3433539	-	201	26249424	papD	c3589	-	PapD protein
3482	 52.48	0	3433739..3436261	-	840	26249425	papC	c3590	-	PapC protein
3483	 49.15	0	3436308..3436895	-	195	26249426	papH	c3591	-	PapH protein
3484	 41.83	-1	3436965..3437564	-	199	26249427	papA	c3592	-	PapA protein
3485	 47.01	0	3438457..3438690	+	77	26249428	papI	c3593	-	PapI protein
3486	 52.22	0	3439254..3439772	-	172	26249429	-	c3594	-	putative transposase
3487	 54.90	0	3439784..3440140	-	118	26249430	-	c3595	-	transposase
3488	 52.91	0	3440140..3440466	-	108	26249431	-	c3596	-	hypothetical protein
3489	 52.96	0	3441312..3441902	-	196	26249432	-	c3597	-	transposase
3490	 49.38	0	3441905..3442066	-	53	26249433	-	c3598	-	hypothetical protein
3491	 42.53	-1	3442496..3442756	+	86	26249434	-	c3599	-	hypothetical protein
3492	 41.18	-1	3442798..3443358	+	186	26249435	-	c3600	-	hypothetical protein
3493	 38.13	-2	3443368..3443826	+	152	26249436	-	c3601	-	hypothetical protein
3494	 52.78	0	3444379..3444594	-	71	26249437	-	c3602	-	hypothetical protein
3495	 52.34	0	3444598..3444981	-	127	26249438	-	c3603	-	hypothetical protein
3496	 53.73	0	3444661..3445062	+	133	26249439	-	c3604	-	hypothetical protein
3497	 52.60	0	3444978..3445169	-	63	26249440	-	c3605	-	hypothetical protein
3498	 42.99	-1	3445257..3445577	-	106	26249441	-	c3606	-	hypothetical protein
3499	 53.93	0	3445858..3447357	+	499	26249442	-	c3607	-	hypothetical protein
3500	 53.70	0	3447354..3448109	+	251	26249443	-	c3608	-	hypothetical protein
3501	 54.22	0	3448318..3448542	-	74	26249444	-	c3609	-	hypothetical protein
3502	 51.65	0	3448776..3450866	-	696	26249445	-	c3610	-	bifunctional enterobactin receptor/adhesin protein
3503	 55.08	0	3451366..3452271	-	301	26249446	-	c3611	-	insertion element IS2 transposase InsD
3504	 48.27	0	3452264..3452638	-	124	26249447	-	c3612	-	transposase insC
3505	 50.94	0	3452810..3452968	+	52	26249448	-	c3613	-	hypothetical protein
3506	 54.84	0	3452972..3453157	-	61	26249449	-	c3614	-	hypothetical protein
3507	 54.99	0	3453103..3454584	-	493	26249450	-	c3615	-	hypothetical protein
3508	 52.42	0	3454615..3454965	-	116	26249451	-	c3616	-	hypothetical protein
3509	 49.09	0	3454962..3455399	-	145	26249452	-	c3617	-	hypothetical protein
3510	 43.06	-1	3455734..3456432	-	232	26249453	-	c3618	-	hypothetical protein
3511	 41.51	-1	3456362..3460261	-	1299	26249454	sat	c3619	-	Aecreted auto transpoter toxin
3512	 36.81	-2	3459134..3459277	+	47	26249456	-	c3621	-	hypothetical protein
3513	 47.22	0	3460499..3460642	+	47	26249457	-	c3622	-	hypothetical protein
3514	 52.72	0	3461193..3463472	-	759	26249458	iutA	c3623	-	IutA protein
3515	 46.41	0	3463394..3464731	-	445	26249459	iucD	c3624	-	IucD protein
3516	 54.73	0	3464728..3466470	-	580	26249460	iucC	c3625	-	IucC protein
3517	 56.54	+1	3466470..3467417	-	315	26249461	iucB	c3626	-	IucB protein
3518	 53.58	0	3467418..3469205	-	595	26249462	iucA	c3627	-	IucA protein
3519	 57.04	+1	3469278..3470471	+	397	26249463	shiF	c3628	-	shiF protein
3520	 63.41	+2	3469679..3469801	-	40	26249464	-	c3629	-	hypothetical protein
3521	 42.22	-1	3470630..3471619	-	329	26249465	-	c3630	-	hypothetical protein
3522	 39.39	-1	3471917..3472081	-	54	26249466	-	c3631	-	hypothetical protein
3523	 34.09	-2	3472357..3472488	-	43	26249467	-	c3632	-	hypothetical protein
3524	 37.59	-2	3472475..3473413	-	312	26249468	-	c3633	-	hypothetical protein
3525	 40.13	-1	3473463..3474581	-	372	26249469	-	c3634	-	hypothetical protein
3526	 36.03	-2	3474585..3475325	-	246	26249470	-	c3635	-	hypothetical protein
3527	 40.25	-1	3475341..3476150	-	269	26249471	-	c3636	-	hypothetical protein
3528	 42.36	-1	3476175..3477647	-	490	161486122	-	c3637	-	putative sialic acid transporter
3529	 40.64	-1	3477696..3478571	-	291	26249473	-	c3638	-	N-acetylmannosamine kinase
3530	 38.24	-2	3478605..3479522	-	305	26249474	-	c3639	-	N-acetylneuraminate lyase
3531	 51.24	0	3480253..3480615	+	120	26249475	-	c3640	-	hypothetical protein
3532	 52.99	0	3480612..3480962	+	116	26249476	-	c3641	-	hypothetical protein
3533	 52.17	0	3480627..3480971	-	114	26249477	-	c3642	-	hypothetical protein
3534	 55.22	0	3480993..3482093	+	366	26249478	-	c3643	-	hypothetical protein
3535	 56.36	+1	3481920..3482084	-	54	26249479	-	c3644	-	hypothetical protein
3536	 59.52	+1	3482090..3483628	+	512	26249480	-	c3645	-	hypothetical protein
3537	 54.87	0	3483544..3483738	-	64	26249481	-	c3646	-	hypothetical protein
3538	 56.36	+1	3483812..3484267	-	151	26249482	-	c3647	-	hypothetical protein
3539	 57.89	+1	3484397..3484966	-	189	26249483	-	c3648	-	hypothetical protein
3540	 49.78	0	3485694..3485918	-	74	26249484	-	c3649	-	hemolysin expression modulating protein
3541	 52.87	0	3486747..3487007	+	86	26249485	-	c3650	-	hypothetical protein
3542	 51.00	0	3487066..3487665	+	199	26249486	-	c3651	-	hypothetical protein
3543	 45.99	0	3487786..3489294	-	502	26249487	-	c3652	-	hypothetical protein
3544	 38.74	-2	3489471..3489692	-	73	26249488	-	c3653	-	hypothetical protein
3545	 58.88	+1	3490608..3491480	+	290	26249489	-	c3654	-	hypothetical protein
3546	 58.29	+1	3491808..3494936	+	1042	26249490	-	c3655	-	antigen 43 precursor
3547	 53.64	0	3495115..3495444	+	109	26249491	-	c3656	-	hypothetical protein
3548	 53.18	0	3495431..3495823	+	130	26249492	-	c3657	-	hypothetical protein
3549	 54.81	0	3495830..3497431	+	533	26249493	-	c3658	-	hypothetical protein
3550	 54.01	0	3497824..3498471	+	215	26249494	-	c3659	-	hypothetical protein
3551	 55.17	0	3498471..3498818	+	115	26249495	-	c3660	-	hypothetical protein
3552	 59.44	+1	3498552..3498731	-	59	26249496	-	c3661	-	hypothetical protein
3553	 57.34	+1	3498838..3499941	+	367	26249497	-	c3662	-	hypothetical protein
3554	 53.02	0	3500024..3500404	+	126	26249498	-	c3663	-	hypothetical protein
3555	 52.72	0	3500527..3503049	+	840	26249499	-	c3664	-	hypothetical protein
3556	 48.25	0	3503125..3503580	+	151	26249500	-	c3665	-	hypothetical protein
3557	 55.13	0	3503659..3503892	+	77	26249501	-	c3666	-	hypothetical protein
3558	 57.14	+1	3503701..3503889	-	62	26249502	-	c3667	-	hypothetical protein
3559	 56.53	+1	3503993..3504811	+	272	26249503	-	c3668	-	hypothetical protein
3560	 54.53	0	3504866..3505351	+	161	26249504	-	c3669	-	hypothetical protein
3561	 57.57	+1	3504920..3505831	-	303	26249505	-	c3670	-	hypothetical protein
3562	 58.33	+1	3505352..3505843	+	163	26249506	-	c3671	-	putative radC-like protein yeeS
3563	 53.09	0	3505840..3506568	-	242	26249507	-	c3672	-	hypothetical protein
3564	 52.70	0	3505906..3506127	+	73	26249508	-	c3673	-	hypothetical protein
3565	 56.74	+1	3506146..3506790	+	214	26249509	-	c3674	-	hypothetical protein
3566	 55.67	0	3506813..3507376	-	187	26249510	-	c3675	-	hypothetical protein
3567	 58.27	+1	3506840..3507220	+	126	26249511	-	c3676	-	hypothetical protein
3568	 54.76	0	3507297..3507674	+	125	26249512	-	c3677	-	hypothetical protein
3569	 53.37	0	3507671..3508159	+	162	26249513	-	c3678	-	hypothetical protein
3570	 48.48	0	3508176..3508373	+	65	26249514	-	c3679	-	hypothetical protein
3571	 48.11	0	3508458..3509303	+	281	26249515	-	c3680	-	hypothetical protein
50.18	MEAN

5.55	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.