IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2370	 53.52	0	2270909..2274271	-	1120	26248307	-	c2455	-	putative peptide synthetase
2371	 51.94	0	2274181..2275620	-	479	26248308	-	c2456	-	hypothetical protein
2372	 56.38	+1	2275682..2277169	-	495	26248309	-	c2457	-	putative amidase
2373	 56.37	+1	2277138..2283602	-	2154	26248310	-	c2458	-	putative peptide synthetase
2374	 56.11	+1	2283613..2290113	-	2166	26248311	-	c2459	-	putative peptide synthetase
2375	 56.91	+1	2290157..2293189	-	1010	26248312	-	c2460	-	putative polyketide synthase
2376	 55.32	0	2293239..2298050	-	1603	26248313	-	c2461	-	hypothetical protein
2377	 49.24	0	2295405..2295536	+	43	26248314	-	c2462	-	hypothetical protein
2378	 56.03	+1	2298083..2299351	-	422	26248315	-	c2463	-	putative transacylase
2379	 52.09	0	2299348..2300376	-	342	26248316	-	c2464	-	putative acyl-coa dehydrogenase
2380	 39.39	-1	2300422..2300619	+	65	26248317	-	c2465	-	hypothetical protein
2381	 39.76	-1	2300482..2300730	-	82	26248318	-	c2466	-	hypothetical protein
2382	 43.79	-1	2300760..2301629	-	289	26248319	-	c2467	-	putative 3-hydroxyacyl-CoA dehydrogenase
2383	 55.02	0	2301639..2304248	-	869	26248320	-	c2468	-	putative polyketide synthase
2384	 55.83	+1	2304280..2308338	-	1352	26248321	-	c2469	-	putative polyketide synthase
2385	 51.58	0	2308283..2313910	-	1875	26248322	-	c2470	-	putative peptide/polyketide synthase
2386	 34.15	-2	2314524..2315258	+	244	26248323	-	c2471	-	hypothetical protein
2387	 47.19	0	2315404..2315670	+	88	26248324	-	c2472	-	transposase
2388	 47.50	0	2315775..2316254	+	159	26248325	-	c2473	-	transposase
2389	 45.61	0	2316245..2316472	+	75	26248326	-	c2474	-	transposase
2390	 37.09	-2	2316562..2316987	-	141	26248327	-	c2475	-	hypothetical protein
2391	 49.04	0	2317279..2318214	-	311	26248328	erfK	c2476	-	hypothetical protein
2392	 51.20	0	2318276..2319355	-	359	26248329	cobT	c2477	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2393	 52.82	0	2319367..2320146	-	259	26248330	cobS	c2478	-	cobalamin synthase
2394	 50.37	0	2320107..2320652	-	181	26248331	cobU	c2479	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
2395	 43.09	-1	2320804..2320926	-	40	26248332	-	c2480	-	hypothetical protein
2396	 41.82	-1	2321117..2321281	-	54	26248333	-	c2481	-	hypothetical protein
2397	 45.30	0	2322324..2324471	+	715	26248334	-	c2482	-	putative outer membrane receptor for iron compound or colicin
2398	 43.41	-1	2324459..2324587	+	42	26248335	-	c2483	-	hypothetical protein
2399	 50.54	0	2324842..2325486	-	214	26248336	-	c2484	-	hypothetical protein
2400	 49.07	0	2325471..2326760	-	429	26248337	-	c2485	-	hypothetical protein
2401	 35.02	-2	2327685..2328395	+	236	26248338	-	c2486	-	hypothetical protein
2402	 45.90	0	2329640..2330164	+	174	26248339	-	c2489	-	putative transferase
2403	 48.05	0	2330118..2330939	+	273	26248340	-	c2490	-	hypothetical protein
2404	 41.48	-1	2331944..2333158	+	404	26248341	-	c2492	-	putative carbohydrate kinase
2405	 39.53	-1	2333172..2333930	+	252	26248342	-	c2493	-	hypothetical protein
2406	 46.69	0	2333984..2334949	+	321	26248343	-	c2494	-	hypothetical protein
2407	 47.83	0	2334952..2335986	+	344	26248344	-	c2495	-	putative phosphotriesterase-related protein
2408	 50.62	0	2336398..2336559	-	53	26248345	-	c2496	-	hypothetical protein
2409	 50.58	0	2336638..2337495	-	285	26248346	-	c2497	-	transposase
2410	 52.55	0	2338301..2338711	-	136	26248347	-	c2498	-	hypothetical protein
2411	 52.74	0	2338699..2339100	-	133	26248348	-	c2499	-	hypothetical protein
2412	 56.93	+1	2339266..2339871	-	201	26248349	-	c2500	-	hypothetical protein
2413	 53.11	0	2340476..2340652	-	58	26248350	-	c2501	-	hypothetical protein
2414	 50.39	0	2340603..2340983	+	126	26248351	-	c2502	-	hypothetical protein
2415	 57.73	+1	2341416..2342612	+	398	26248352	-	c2503	-	transposase
2416	 57.97	+1	2342382..2342519	-	45	26248353	-	c2504	-	hypothetical protein
2417	 53.76	0	2342736..2343014	+	92	26248354	-	c2505	-	hypothetical protein
2418	 50.00	0	2343093..2343332	+	79	26248355	-	c2506	-	hypothetical protein
2419	 54.48	0	2344396..2344920	+	174	26248356	-	c2508	-	hypothetical protein
2420	 53.70	0	2344917..2345672	+	251	26248357	-	c2509	-	insertion sequence ATP-binding protein
2421	 49.15	0	2345772..2346125	+	117	26248358	-	c2510	-	hypothetical protein
2422	 50.06	0	2347151..2347933	-	260	26248359	-	c2511	-	transposase/IS protein
2423	 52.79	0	2347930..2348952	-	340	26248360	-	c2512	-	transposase
2424	 50.53	0	2349503..2349880	-	125	26248361	-	c2513	-	hypothetical protein
2425	 50.90	0	2350449..2351621	+	390	26248362	-	c2514	-	hypothetical protein
2426	 56.64	+1	2352463..2353230	-	255	26248363	-	c2515	-	putative ABC transporter
2427	 56.85	+1	2353227..2354285	-	352	26248364	-	c2516	-	ABC transporter
2428	 55.19	0	2354304..2355296	-	330	26248365	-	c2517	-	periplasmic binding protein
2429	 53.60	0	2355304..2357469	-	721	26248366	-	c2518	-	TonB dependent receptor
2430	 51.74	0	2358550..2360934	+	794	26248367	-	c2520	-	hypothetical protein
2431	 52.54	0	2360110..2360286	-	58	26248368	-	c2521	-	hypothetical protein
2432	 53.86	0	2360931..2361836	+	301	26248369	-	c2522	-	hypothetical protein
2433	 54.62	0	2361833..2362903	+	356	26248370	-	c2523	-	hypothetical protein
2434	 45.93	0	2362931..2363716	+	261	26248371	-	c2524	-	hypothetical protein
2435	 42.82	-1	2363732..2364142	+	136	26248372	-	c2525	-	hypothetical protein
2436	 56.20	+1	2364363..2365184	+	273	26248373	-	c2526	-	hypothetical protein
2437	 54.32	0	2365275..2365760	+	161	26248374	-	c2527	-	hypothetical protein
2438	 55.19	0	2365329..2365868	-	179	26248375	-	c2528	-	hypothetical protein
2439	 57.94	+1	2365806..2366252	+	148	26248376	-	c2529	-	putative radC-like protein yeeS
2440	 52.70	0	2366321..2366542	+	73	26248377	-	c2530	-	hypothetical protein
2441	 57.99	+1	2366616..2366984	+	122	26248378	-	c2531	-	hypothetical protein
2442	 53.60	0	2367073..2367447	+	124	26248379	-	c2532	-	hypothetical protein
2443	 49.74	0	2367444..2367638	+	64	26248380	yeeW	c2533	-	hypothetical protein
2444	 46.46	0	2368536..2368931	-	131	26248381	yeeX	c2534	-	hypothetical protein
2445	 41.46	-1	2368950..2369072	+	40	26248382	-	c2535	-	hypothetical protein
2446	 50.61	0	2369037..2370095	-	352	26248383	yeeA	c2536	-	hypothetical protein
2447	 47.47	0	2370293..2370766	-	157	26248384	sbmC	c2537	-	DNA gyrase inhibitor
2448	 49.10	0	2370885..2372057	-	390	26248385	dacD	c2538	-	D-alanyl-D-alanine carboxypeptidase
2449	 50.49	0	2372260..2373687	+	475	161486193	sbcB	c2539	-	exonuclease I
2450	 52.45	0	2373761..2375125	-	454	26248387	yeeF	c2540	-	putative transport protein YeeF
2451	 42.03	-1	2375301..2375438	-	45	26248388	-	c2541	-	hypothetical protein
2452	 50.89	0	2375386..2376336	-	316	26248389	yeeY	c2542	-	putative transcriptional regulator YeeY
2453	 51.88	0	2376361..2377185	-	274	26248390	-	c2543	-	hypothetical protein
2454	 43.14	-1	2377268..2377522	-	84	26248391	-	c2544	-	hypothetical protein
2455	 48.02	0	2377519..2377770	-	83	161486192	yefM	c2545	-	antitoxin YefM
2456	 43.14	-1	2378053..2378103	+	16	26248393	hisL	c5496	-	his operon leader peptide
2457	 54.33	0	2378249..2379148	+	299	26248394	hisG	c2546	-	ATP phosphoribosyltransferase
2458	 57.99	+1	2379145..2380458	+	437	26248395	hisD	c2547	-	histidinol dehydrogenase
2459	 55.18	0	2380455..2381525	+	356	26248396	hisC	c2548	-	histidinol-phosphate aminotransferase
2460	 53.56	0	2381525..2382592	+	355	161486191	hisB	c2549	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2461	 55.84	+1	2382592..2383182	+	196	26248398	hisH	c2550	-	imidazole glycerol phosphate synthase subunit HisH
2462	 55.83	+1	2383182..2383919	+	245	161486190	hisA	c2551	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2463	 52.77	0	2383901..2384677	+	258	26248400	hisF	c2552	-	imidazole glycerol phosphate synthase subunit HisF
2464	 53.92	0	2384671..2385282	+	203	26248401	hisI	c2553	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2465	 45.76	0	2385469..2386482	-	337	26248402	wzzB	c2554	-	chain length determinant protein
2466	 43.87	-1	2386589..2387755	-	388	26248403	ugd	c2555	-	UDP-glucose 6-dehydrogenase
2467	 50.25	0	2388005..2389411	-	468	26248404	gnd	c2556	-	6-phosphogluconate dehydrogenase
2468	 54.85	0	2389574..2390944	-	456	26248405	manB	c2557	-	phosphomannomutase
2469	 38.09	-2	2391027..2392478	-	483	26248406	-	c2558	-	mannose-1-phosphate guanylyltransferase
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.