IslandPathversion 1.0

IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.18 STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2312	 43.31	-1	2201204..2202706	+	500	26248249	-	c2397	-	hypothetical protein
2313	 32.14	-2	2202763..2203686	+	307	26248250	-	c2398	-	hypothetical protein
2314	 33.14	-2	2203818..2204327	-	169	26248251	-	c2399	-	hypothetical protein
2315	 29.63	-2	2204464..2205300	+	278	26248252	-	c2400	-	hypothetical protein
2316	 47.05	0	2205646..2206221	-	191	26248253	-	c2401	-	hypothetical protein
2317	 33.33	-2	2206262..2206399	-	45	26248254	-	c2402	-	hypothetical protein
2318	 36.61	-2	2206594..2207082	+	162	26248255	-	c2403	-	hypothetical protein
2319	 34.74	-2	2207072..2207284	+	70	26248256	-	c2404	-	hypothetical protein
2320	 33.42	-2	2207572..2208753	-	393	26248257	-	c2405	-	hypothetical protein
2321	 45.07	0	2208805..2209767	-	320	26248258	-	c2406	-	hypothetical protein
2322	 23.53	-2	2210085..2210237	+	50	26248259	-	c2407	-	hypothetical protein
2323	 32.82	-2	2211120..2211701	+	193	26248260	-	c2408	-	hypothetical protein
2324	 31.01	-2	2211786..2212517	-	243	26248261	-	c2409	-	hypothetical protein
2325	 36.25	-2	2212691..2213170	+	159	26248262	-	c2410	-	hypothetical protein
2326	 46.42	0	2213329..2213733	+	134	26248263	-	c2411	-	DNA-binding protein H-NS
2327	 47.24	0	2213797..2214177	-	126	26248264	-	c2412	-	hypothetical protein
2328	 36.63	-2	2214256..2214498	-	80	26248265	-	c2413	-	hypothetical protein
2329	 36.03	-2	2214571..2214867	-	98	26248266	-	c2414	-	hypothetical protein
2330	 33.33	-2	2214920..2215222	-	100	26248267	-	c2415	-	hypothetical protein
2331	 43.62	-1	2215727..2216620	-	297	26248268	-	c2416	-	hypothetical protein
2332	 45.28	0	2216985..2217821	+	278	26248269	yeeI	c2417	-	hypothetical protein
2333	 52.87	0	2218378..2219421	+	347	26248270	-	c2418	-	prophage P4 integrase
2334	 55.25	0	2219615..2220919	-	434	26248271	-	c2419	-	salicylate synthase Irp9
2335	 59.62	+1	2220947..2222350	-	467	26248272	-	c2420	-	putative cytoplasmic transmembrane protein
2336	 58.42	+1	2222220..2224049	-	609	26248273	-	c2421	-	ABC transporter
2337	 57.29	+1	2224009..2225811	-	600	26248274	-	c2422	-	putative inner membrane ABC-transporter
2338	 56.25	+1	2225978..2226937	+	319	26248275	-	c2423	-	putative AraC type regulator
2339	 60.01	+1	2227110..2231378	+	1422	26248276	-	c2424	-	putative peptide synthetase
2340	 46.03	0	2231467..2231844	-	125	26248277	-	c2425	-	hypothetical protein
2341	 57.23	+1	2231817..2233946	+	709	26248278	-	c2426	-	putative peptide synthetase
2342	 60.61	+1	2234022..2236217	+	731	26248279	-	c2427	-	putative peptide/polyketide synthetase protein
2343	 61.39	+2	2236117..2239014	+	965	26248280	-	c2428	-	hypothetical protein
2344	 60.25	+1	2238812..2243521	+	1569	26248281	-	c2429	-	hypothetical protein
2345	 60.49	+1	2243518..2244618	+	366	26248282	-	c2430	-	hypothetical protein
2346	 60.00	+1	2244588..2244722	-	44	26248283	-	c2431	-	hypothetical protein
2347	 57.99	+1	2244762..2245418	+	218	26248284	-	c2432	-	putative thioesterase
2348	 59.05	+1	2245422..2246669	+	415	26248285	-	c2433	-	2,3-dihydroxybenzoate-AMP ligase
2349	 58.25	+1	2246714..2246998	+	94	26248286	-	c2434	-	putative salicyl-AMP ligase
2350	 58.15	+1	2246735..2247004	-	89	26248287	-	c2435	-	hypothetical protein
2351	 56.43	+1	2247129..2249150	+	673	26248288	-	c2436	-	putative pesticin receptor precursor
2352	 43.49	-1	2249741..2250547	+	268	26248289	-	c2437	-	hypothetical protein
2353	 52.05	0	2250474..2250644	+	56	26248290	-	c2438	-	hypothetical protein
2354	 49.59	0	2250680..2252149	+	489	26248291	-	c2439	-	hypothetical protein
2355	 46.75	0	2252162..2252638	+	158	26248292	-	c2440	-	hypothetical protein
2356	 41.71	-1	2252766..2253386	-	206	26248293	-	c2441	-	hypothetical protein
2357	 35.84	-2	2253361..2253879	-	172	26248294	-	c2442	-	hypothetical protein
2358	 50.49	0	2254131..2255447	+	438	26248295	shiA	c2443	-	shikimate transporter
2359	 49.55	0	2255549..2257003	+	484	161486195	amn	c2444	-	AMP nucleosidase
2360	 39.33	-1	2257346..2258062	+	238	26248297	yeeN	c2445	-	hypothetical protein
2361	 48.80	0	2258918..2259835	+	305	161486194	nac	c2446	-	nitrogen assimilation transcriptional regulator
2362	 48.37	0	2259937..2260887	+	316	26248299	cbl	c2447	-	transcriptional regulator Cbl
2363	 48.45	0	2261008..2262648	+	546	26248300	yeeO	c2448	-	hypothetical protein
2364	 51.34	0	2262986..2264257	+	423	26248301	-	c2449	-	prophage P4 integrase
2365	 39.77	-1	2264537..2265049	-	170	26248302	-	c2450	-	hypothetical protein
2366	 46.06	0	2265084..2265806	-	240	26248303	-	c2451	-	putative thioesterase
2367	 50.23	0	2265799..2267313	-	504	26248304	-	c2452	-	hypothetical protein
2368	 52.11	0	2267326..2269785	-	819	26248305	-	c2453	-	putative polyketide synthase
2369	 55.29	0	2269816..2270931	-	371	26248306	-	c2454	-	hypothetical protein
2370	 53.52	0	2270909..2274271	-	1120	26248307	-	c2455	-	putative peptide synthetase
2371	 51.94	0	2274181..2275620	-	479	26248308	-	c2456	-	hypothetical protein
2372	 56.38	+1	2275682..2277169	-	495	26248309	-	c2457	-	putative amidase
2373	 56.37	+1	2277138..2283602	-	2154	26248310	-	c2458	-	putative peptide synthetase
2374	 56.11	+1	2283613..2290113	-	2166	26248311	-	c2459	-	putative peptide synthetase
2375	 56.91	+1	2290157..2293189	-	1010	26248312	-	c2460	-	putative polyketide synthase
2376	 55.32	0	2293239..2298050	-	1603	26248313	-	c2461	-	hypothetical protein
2377	 49.24	0	2295405..2295536	+	43	26248314	-	c2462	-	hypothetical protein
2378	 56.03	+1	2298083..2299351	-	422	26248315	-	c2463	-	putative transacylase
2379	 52.09	0	2299348..2300376	-	342	26248316	-	c2464	-	putative acyl-coa dehydrogenase
2380	 39.39	-1	2300422..2300619	+	65	26248317	-	c2465	-	hypothetical protein
2381	 39.76	-1	2300482..2300730	-	82	26248318	-	c2466	-	hypothetical protein
2382	 43.79	-1	2300760..2301629	-	289	26248319	-	c2467	-	putative 3-hydroxyacyl-CoA dehydrogenase
2383	 55.02	0	2301639..2304248	-	869	26248320	-	c2468	-	putative polyketide synthase
2384	 55.83	+1	2304280..2308338	-	1352	26248321	-	c2469	-	putative polyketide synthase
2385	 51.58	0	2308283..2313910	-	1875	26248322	-	c2470	-	putative peptide/polyketide synthase
2386	 34.15	-2	2314524..2315258	+	244	26248323	-	c2471	-	hypothetical protein
2387	 47.19	0	2315404..2315670	+	88	26248324	-	c2472	-	transposase
2388	 47.50	0	2315775..2316254	+	159	26248325	-	c2473	-	transposase
2389	 45.61	0	2316245..2316472	+	75	26248326	-	c2474	-	transposase
2390	 37.09	-2	2316562..2316987	-	141	26248327	-	c2475	-	hypothetical protein
2391	 49.04	0	2317279..2318214	-	311	26248328	erfK	c2476	-	hypothetical protein
2392	 51.20	0	2318276..2319355	-	359	26248329	cobT	c2477	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2393	 52.82	0	2319367..2320146	-	259	26248330	cobS	c2478	-	cobalamin synthase
2394	 50.37	0	2320107..2320652	-	181	26248331	cobU	c2479	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
2395	 43.09	-1	2320804..2320926	-	40	26248332	-	c2480	-	hypothetical protein
2396	 41.82	-1	2321117..2321281	-	54	26248333	-	c2481	-	hypothetical protein
2397	 45.30	0	2322324..2324471	+	715	26248334	-	c2482	-	putative outer membrane receptor for iron compound or colicin
2398	 43.41	-1	2324459..2324587	+	42	26248335	-	c2483	-	hypothetical protein
2399	 50.54	0	2324842..2325486	-	214	26248336	-	c2484	-	hypothetical protein
2400	 49.07	0	2325471..2326760	-	429	26248337	-	c2485	-	hypothetical protein
2401	 35.02	-2	2327685..2328395	+	236	26248338	-	c2486	-	hypothetical protein
2402	 45.90	0	2329640..2330164	+	174	26248339	-	c2489	-	putative transferase
2403	 48.05	0	2330118..2330939	+	273	26248340	-	c2490	-	hypothetical protein
2404	 41.48	-1	2331944..2333158	+	404	26248341	-	c2492	-	putative carbohydrate kinase
2405	 39.53	-1	2333172..2333930	+	252	26248342	-	c2493	-	hypothetical protein
2406	 46.69	0	2333984..2334949	+	321	26248343	-	c2494	-	hypothetical protein
2407	 47.83	0	2334952..2335986	+	344	26248344	-	c2495	-	putative phosphotriesterase-related protein
2408	 50.62	0	2336398..2336559	-	53	26248345	-	c2496	-	hypothetical protein
2409	 50.58	0	2336638..2337495	-	285	26248346	-	c2497	-	transposase
2410	 52.55	0	2338301..2338711	-	136	26248347	-	c2498	-	hypothetical protein
2411	 52.74	0	2338699..2339100	-	133	26248348	-	c2499	-	hypothetical protein
50.18	MEAN

5.55	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.