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Escherichia coli CFT073, complete genome - 1..5231428 5339 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1855 43.45 -1 1773472..1773975 - 167 26247788 ydeR c1932 - fimbrial-like protein ydeR precursor 1856 43.69 -1 1773988..1774518 - 176 26247789 ydeS c1933 - fimbrial-like protein ydeS precursor 1857 44.34 -1 1774532..1777183 - 883 26247790 - c1934 - Outer membrane usher protein fimD precursor 1858 45.29 0 1777225..1777935 - 236 26247791 - c1935 - chaperone protein fimC precursor 1859 44.44 -1 1778297..1778908 - 203 26247792 - c1936 - Type-1 fimbrial protein, A chain precursor 1860 46.74 0 1779636..1780418 - 260 26247793 - c1937 - hypothetical protein 1861 49.05 0 1780528..1781475 + 315 26247794 oprR c1938 - putative transcriptional regulator YcjZ 1862 47.90 0 1781157..1781609 + 150 26247795 - c1939 - hypothetical protein 1863 47.22 0 1781779..1783197 - 472 26247796 hipA c1940 - protein hipA 1864 45.61 0 1783191..1783475 - 94 26247797 hipB c1941 - DNA-binding transcriptional regulator HipB 1865 54.94 0 1783765..1784523 + 252 26247798 tam c1942 - trans-aconitate 2-methyltransferase 1866 47.72 0 1784527..1785492 - 321 26247799 yneE c1943 - hypothetical protein 1867 48.84 0 1787317..1788735 - 472 26247800 yneF c1945 - hypothetical protein 1868 51.39 0 1788874..1789233 - 119 26247801 yneG c1946 - hypothetical protein 1869 51.78 0 1789233..1790159 - 308 26247802 yneH c1947 - glutaminase 1870 52.51 0 1790223..1791635 - 470 26247803 yneI c1948 - aldehyde-dehydrogenase like protein 1871 53.51 0 1791712..1792593 + 293 26247804 yneJ c1949 - putative transcriptional regulator YneJ 1872 50.80 0 1792932..1794122 + 396 26247805 sotB c1950 - sugar efflux transporter 1873 50.30 0 1794147..1794812 - 221 26247806 marC c1951 - multiple drug resistance protein MarC 1874 49.20 0 1795024..1795458 + 144 26247807 marR c1952 - DNA-binding transcriptional repressor MarR 1875 44.79 0 1795479..1795862 + 127 161486229 marA c1953 - DNA-binding transcriptional activator MarA 1876 48.86 0 1795894..1796112 + 72 26247809 marB c1954 - hypothetical protein 1877 44.40 -1 1796169..1797614 - 481 26247810 celA c1955 - 6-phospho-beta-glucosidase 1878 42.65 -1 1797633..1799306 - 557 26247811 - c1956 - hypothetical protein 1879 43.81 -1 1799361..1799675 - 104 26247812 - c1957 - PTS system, cellobiose-specific IIA component 1880 42.95 -1 1799700..1801061 - 453 26247813 - c1958 - hypothetical protein 1881 41.67 -1 1801137..1801448 - 103 26247814 - c1959 - PTS system, cellobiose-specific IIB component 1882 41.06 -1 1801647..1802345 + 232 26247815 - c1960 - hypothetical protein 1883 49.78 0 1802390..1803289 - 299 161486228 ydeD c1961 - O-acetylserine/cysteine export protein 1884 49.83 0 1803484..1804671 + 395 26247817 ydeF c1962 - putative MFS-type transporter YdeE 1885 44.70 0 1805113..1806009 - 298 26247818 ydeH c1963 - hypothetical protein 1886 50.28 0 1806510..1808621 - 703 26247819 dcp c1964 - dipeptidyl carboxypeptidase II 1887 50.66 0 1808677..1809438 + 253 26247820 ydfG c1965 - 3-hydroxy acid dehydrogenase 1888 50.80 0 1809527..1810213 + 228 26247821 ydfH c1966 - putative transcriptional regulator YdfH 1889 51.96 0 1810390..1810593 + 67 26247822 ydfZ c1967 - hypothetical protein 1890 49.42 0 1810629..1812089 - 486 26247823 - c1968 - oxidoreductase ydfI 1891 46.35 0 1812178..1813545 - 455 26247824 ydfJ c1969 - metabolite transport protein 1892 45.40 0 1813603..1814646 - 347 26247825 rspB c1970 - putative dehydrogenase 1893 50.88 0 1814634..1815881 - 415 26247826 rspA c1971 - starvation sensing protein rspA 1894 51.79 0 1816054..1816389 - 111 26247827 ynfA c1972 - hypothetical protein 1895 50.29 0 1816515..1816856 + 113 26247828 ynfB c1973 - hypothetical protein 1896 46.88 0 1816891..1817451 + 186 26247829 speG c1974 - spermidine N(1)-acetyltransferase 1897 44.16 -1 1817454..1818164 - 236 161486227 ynfC c1975 - hypothetical protein 1898 52.87 0 1818230..1818577 + 115 26247831 ynfD c1976 - hypothetical protein 1899 50.52 0 1818776..1821202 + 808 26247832 ynfE c1977 - putative dimethyl sulfoxide reductase chain ynfE precursor 1900 50.72 0 1821260..1823686 + 808 26247833 ynfF c1978 - dimethyl sulfoxide reductase chain ynfF precursor 1901 52.27 0 1823697..1824314 + 205 26247834 ynfG c1979 - anaerobic dimethyl sulfoxide reductase chain ynfG 1902 49.66 0 1824295..1824441 - 48 26247835 - c1980 - hypothetical protein 1903 51.23 0 1824316..1825170 + 284 26247836 ynfH c1981 - anaerobic dimethyl sulfoxide reductase chain ynfH 1904 53.66 0 1825213..1825827 + 204 161486226 ynfI c1982 - twin-argninine leader-binding protein DmsD 1905 54.10 0 1826022..1827278 + 418 161486225 ynfJ c1983 - putative voltage-gated ClC-type chloride channel ClcB 1906 52.16 0 1827231..1827926 - 231 161486224 bioD c1984 - putative dithiobiotin synthetase 1907 52.01 0 1828051..1829271 - 406 26247840 mlc c1985 - Mlc protein 1908 52.13 0 1829406..1830299 - 297 26247841 ynfL c1986 - putative transcriptional regulator YnfL 1909 52.71 0 1830406..1831659 + 417 26247842 ynfM c1987 - putative transport protein YnfM 1910 51.13 0 1832071..1832379 + 102 161486223 asr c1988 - acid shock protein precursor 1911 52.55 0 1832655..1833476 + 273 26247845 - c1990 - putative protease ydgD precursor 1912 51.21 0 1833515..1833844 - 109 26247846 ydgE c1991 - multidrug efflux system protein MdtI 1913 43.44 -1 1833831..1834196 - 121 26247847 ydgF c1992 - multidrug efflux system protein MdtJ 1914 50.14 0 1834608..1835642 + 344 26247848 tqsA c1993 - putative transport protein 1915 52.56 0 1835667..1837055 - 462 26247849 pntB c1994 - pyridine nucleotide transhydrogenase 1916 52.24 0 1837066..1838652 - 528 26247850 pntA c1995 - NAD(P) transhydrogenase subunit alpha 1917 50.79 0 1839122..1840066 + 314 26247851 ydgH c1996 - hypothetical protein 1918 53.19 0 1840225..1841634 + 469 26247852 ydgI c1997 - putative arginine/ornithine antiporter 1919 51.31 0 1841671..1842393 + 240 26247853 ydgB c1998 - short chain dehydrogenase 1920 47.32 0 1842390..1842725 - 111 26247854 ydgC c1999 - hypothetical protein 1921 48.33 0 1842794..1843573 + 259 26247855 rstA c2000 - DNA-binding transcriptional regulator RstA 1922 51.31 0 1843577..1844878 + 433 26247856 rstB c2001 - sensor protein RstB 1923 49.79 0 1844942..1845883 + 313 26247857 tus c2002 - DNA replication terminus site-binding protein 1924 54.20 0 1845880..1847283 - 467 26247858 fumC c2003 - fumarate hydratase 1925 51.12 0 1847426..1849072 - 548 26247859 fumA c2004 - fumarate hydratase class I, aerobic 1926 50.60 0 1849271..1850446 + 391 26247860 manA c2005 - mannose-6-phosphate isomerase 1927 49.57 0 1850547..1852055 + 502 26247861 ydgA c2006 - hypothetical protein 1928 47.39 0 1852100..1853365 - 421 26247862 uidC c2007 - putative outer membrane porin protein 1929 51.75 0 1853404..1854777 - 457 26247863 uidB c2008 - glucuronide transporter 1930 51.88 0 1854774..1856585 - 603 26247864 uidA c2009 - beta-D-glucuronidase 1931 50.59 0 1856975..1857565 - 196 26247865 uidR c2010 - uid operon repressor 1932 47.27 0 1857794..1858561 - 255 26247866 hdhA c2011 - 7-alpha-hydroxysteroid dehydrogenase 1933 54.42 0 1858673..1859701 - 342 26247867 malI c2012 - DNA-binding transcriptional repressor MalI 1934 52.42 0 1859876..1861468 + 530 161486222 malX c2013 - bifunctional maltose and glucose-specific PTS system components IICB 1935 51.32 0 1861478..1862650 + 390 26247869 malY c2014 - cystathionine beta-lyase 1936 53.69 0 1862754..1863755 + 333 26247870 add c2015 - adenosine deaminase 1937 53.99 0 1863791..1864831 - 346 161486221 ydgJ c2016 - putative oxidoreductase 1938 47.22 0 1865472..1865687 + 71 26247872 ydgT c2017 - oriC-binding nucleoid-associated protein 1939 49.03 0 1865749..1866213 + 154 26247873 ydgK c2018 - hypothetical protein 1940 51.20 0 1866290..1866871 + 193 26247874 - c2019 - Na(+)-translocating NADH-quinone reductase subunit E 1941 55.09 0 1866871..1867449 + 192 26247875 - c2020 - electron transport complex protein RnfB 1942 54.87 0 1867442..1869670 + 742 26247876 - c2021 - electron transport complex protein RnfC 1943 53.07 0 1869671..1870729 + 352 26247877 rnfD c2022 - electron transport complex protein RnfD 1944 52.82 0 1870733..1871353 + 206 26247878 - c2023 - electron transport complex protein RnfG 1945 52.87 0 1871357..1872052 + 231 26247879 ydgQ c2024 - SoxR-reducing system protein RsxE 1946 48.11 0 1872052..1872687 + 211 26247880 nth c2025 - endonuclease III 1947 51.03 0 1873298..1874800 + 500 26247881 tppB c2026 - putative tripeptide transporter permease 1948 50.50 0 1874906..1875511 + 201 26247882 gst c2027 - glutathionine S-transferase 1949 52.20 0 1875555..1876418 - 287 26247883 pdxY c2028 - pyridoxamine kinase 1950 51.83 0 1876477..1877763 - 428 26247884 tyrS c2029 - tyrosyl-tRNA synthetase 1951 51.45 0 1877880..1878536 - 218 26247885 pdxH c2030 - pyridoxamine 5'-phosphate oxidase 1952 46.67 0 1878595..1878924 - 109 26247886 ydhA c2031 - lysozyme inhibitor 1953 55.50 0 1879022..1880131 - 369 26247887 anmK c2032 - anhydro-N-acetylmuramic acid kinase 1954 50.64 0 1880405..1880872 + 155 26247888 slyB c2033 - Outer membrane lipoprotein slyB precursor 50.18 MEAN 5.55 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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