IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1763	 43.03	-1	1672343..1673239	+	298	26247696	ynbB	c1835	-	hypothetical protein
1764	 51.54	0	1673255..1675012	+	585	26247697	ynbC	c1836	-	hypothetical protein
1765	 49.50	0	1674927..1676318	+	463	26247698	ynbD	c1837	-	hypothetical protein
1766	 51.58	0	1676303..1676965	+	220	26247699	-	c1838	-	hypothetical protein
1767	 51.98	0	1676372..1676977	-	201	26247700	acpD	c1839	-	azoreductase
1768	 53.82	0	1677235..1681080	+	1281	161486233	hrpA	c1840	-	ATP-dependent RNA helicase HrpA
1769	 51.31	0	1681353..1682153	+	266	26247702	ydcF	c1841	-	hypothetical protein
1770	 50.83	0	1682350..1683789	+	479	26247703	aldA	c1842	-	aldehyde dehydrogenase A
1771	 48.60	0	1683831..1684832	-	333	26247704	-	c1843	-	glyceraldehyde 3-phosphate dehydrogenase A
1772	 48.21	0	1685021..1685551	+	176	161486232	cybB	c1844	-	cytochrome b561
1773	 45.98	0	1685796..1685969	+	57	26247706	ydcA	c1845	-	hypothetical protein
1774	 53.72	0	1686126..1686596	+	156	26247707	-	c1846	-	hypothetical protein
1775	 47.98	0	1686634..1687698	-	354	26247708	ycdI	c1847	-	putative transcriptional regulator YdcI
1776	 53.05	0	1687774..1689117	+	447	26247709	ydcJ	c1848	-	hypothetical protein
1777	 50.97	0	1689342..1690997	+	551	26247710	mdoD	c1849	-	glucan biosynthesis protein D
1778	 41.99	-1	1691131..1691361	+	76	26247711	ydcH	c1850	-	hypothetical protein
1779	 42.88	-1	1691409..1691963	+	184	26247712	rimL	c1851	-	ribosomal-protein-L7/L12-serine acetyltransferase
1780	 47.91	0	1691955..1692935	-	326	26247713	ydcK	c1852	-	hypothetical protein
1781	 51.32	0	1692951..1694051	+	366	26247714	tehA	c1853	-	potassium-tellurite ethidium and proflavin transporter
1782	 46.80	0	1694048..1694641	+	197	26247715	tehB	c1854	-	tellurite resistance protein TehB
1783	 41.09	-1	1694925..1695053	-	42	26247716	-	c1855	-	hypothetical protein
1784	 44.69	0	1694944..1695612	+	222	26247717	ydcL	c1856	-	lipoprotein ydcL precursor
1785	 52.47	0	1695647..1696942	-	431	26247718	ydcO	c1857	-	hypothetical protein
1786	 49.53	0	1696911..1697447	+	178	26247719	ydcN	c1858	-	hypothetical protein
1787	 50.65	0	1697478..1699481	+	667	26247720	ydcP	c1859	-	putative protease ydcP precursor
1788	 48.92	0	1699573..1699803	-	76	26247721	yncJ	c1860	-	hypothetical protein
1789	 40.31	-1	1699860..1699988	-	42	26247722	-	c1861	-	hypothetical protein
1790	 46.57	0	1700015..1700218	+	67	26247723	-	c1862	-	hypothetical protein
1791	 50.96	0	1700297..1701703	+	468	26247724	ydcR	c1863	-	hypothetical protein
1792	 53.05	0	1701948..1703093	+	381	26247725	ydcS	c1864	-	ABC transporter periplasmic-binding protein
1793	 54.93	0	1703111..1704124	+	337	26247726	ydcT	c1865	-	ABC transporter ATP-binding protein
1794	 54.03	0	1704125..1705066	+	313	26247727	ydcU	c1866	-	ABC transporter permease
1795	 53.95	0	1705056..1705700	+	214	26247728	ydcV	c1867	-	ABC transporter permease
1796	 53.47	0	1705873..1707297	+	474	26247729	ydcW	c1869	-	gamma-aminobutyraldehyde dehydrogenase
1797	 44.98	0	1707609..1707857	+	82	26247730	-	c1870	-	hypothetical protein
1798	 52.56	0	1707943..1708176	+	77	26247731	ydc	c1871	-	hypothetical protein
1799	 52.67	0	1708177..1708626	-	149	26247732	ydcZ	c1872	-	hypothetical protein
1800	 51.89	0	1708623..1709204	-	193	26247733	yncA	c1873	-	acetyltransferase yncA
1801	 47.68	0	1709348..1709584	+	78	26247734	-	c1874	-	hypothetical protein
1802	 50.00	0	1711967..1713028	+	353	26247735	yncE	c1877	-	hypothetical protein
1803	 51.77	0	1713141..1714691	-	516	26247736	ansP	c1878	-	L-asparagine permease
1804	 46.89	0	1714907..1715083	+	58	26247737	-	c1879	-	hypothetical protein
1805	 43.33	-1	1715196..1715525	+	109	26247738	-	c1880	-	hypothetical protein
1806	 38.00	-2	1715945..1716094	-	49	26247739	-	c1881	-	hypothetical protein
1807	 56.84	+1	1716066..1716350	+	94	26247740	-	c1882	-	hypothetical protein
1808	 57.78	+1	1716369..1718327	+	652	26247741	-	c1883	-	hypothetical protein
1809	 44.26	-1	1718427..1719167	+	246	26247742	-	c1884	-	hypothetical protein
1810	 38.11	-2	1719505..1720740	+	411	26247743	-	c1885	-	hypothetical protein
1811	 43.39	-1	1720751..1721794	+	347	26247744	-	c1886	-	hypothetical protein
1812	 54.74	0	1721906..1722190	+	94	26247745	-	c1887	-	hypothetical protein
1813	 56.73	+1	1722209..1724614	+	801	26247746	-	c1888	-	hypothetical protein
1814	 35.82	-2	1724601..1725203	+	200	26247747	-	c1889	-	hypothetical protein
1815	 30.91	-2	1725540..1725992	+	150	26247748	-	c1890	-	hypothetical protein
1816	 28.99	-2	1726211..1726717	+	168	26247749	-	c1891	-	hypothetical protein
1817	 27.14	-2	1726714..1727181	+	155	26247750	-	c1892	-	hypothetical protein
1818	 35.42	-2	1727294..1727437	+	47	26247751	-	c1893	-	hypothetical protein
1819	 52.46	0	1728047..1728616	-	189	26247752	yddH	c1894	-	hypothetical protein
1820	 50.35	0	1728791..1729636	+	281	26247753	nhoA	c1895	-	N-hydroxyarylamine O-acetyltransferase
1821	 52.35	0	1729732..1730625	-	297	26247754	yddE	c1896	-	hypothetical protein
1822	 51.84	0	1730705..1731385	-	226	26247755	narV	c1897	-	respiratory nitrate reductase 2 gamma chain
1823	 55.75	+1	1731382..1732077	-	231	26247756	narW	c1898	-	respiratory nitrate reductase 2 delta chain
1824	 54.05	0	1732077..1733621	-	514	26247757	narY	c1899	-	respiratory nitrate reductase 2 beta chain
1825	 54.53	0	1733618..1737481	-	1287	26247758	narZ	c1900	-	respiratory nitrate reductase 2 alpha chain
1826	 49.03	0	1737453..1738841	-	462	26247759	narU	c1901	-	nitrite extrusion protein 2
1827	 49.89	0	1739114..1739995	-	293	26247760	yddG	c1902	-	hypothetical protein
1828	 54.04	0	1740228..1743275	+	1015	26247761	fdnG	c5623	-	formate dehydrogenase, nitrate-inducible, major subunit
1829	 54.07	0	1743252..1744196	-	314	26247762	-	c1905	-	hypothetical protein
1830	 54.35	0	1743288..1744172	+	294	26247763	fdnH	c1906	-	formate dehydrogenase-N beta subunit
1831	 49.54	0	1744165..1744818	+	217	26247764	fdnI	c1907	-	formate dehydrogenase-N subunit gamma
1832	 50.18	0	1745018..1745290	+	90	26247765	-	c1908	-	hypothetical protein
1833	 51.58	0	1745044..1745328	-	94	26247766	yddM	c1909	-	hypothetical protein
1834	 48.35	0	1745328..1745600	-	90	26247767	-	c1910	-	hypothetical protein
1835	 53.21	0	1745792..1746802	-	336	161486231	adhP	c1911	-	alcohol dehydrogenase
1836	 51.71	0	1746936..1748660	-	574	26247769	sfcA	c1912	-	malate dehydrogenase
1837	 44.93	0	1748790..1748927	-	45	26247770	rpsV	c1913	-	30S ribosomal subunit S22
1838	 45.83	0	1749029..1749244	-	71	161486230	-	c1914	-	biofilm-dependent modulation protein
1839	 33.33	-2	1749411..1749551	+	46	26247772	-	c1915	-	hypothetical protein
1840	 49.54	0	1749589..1750020	+	143	26247773	osmC	c1916	-	osmotically inducible protein C
1841	 51.01	0	1751294..1752634	-	446	26247774	-	c1918	-	putative sensor kinase
1842	 44.75	0	1752635..1752853	-	72	26247775	-	c1919	-	hypothetical protein
1843	 52.50	0	1753177..1754496	-	439	26247776	yddW	c1920	-	lipoprotein yddW precursor
1844	 48.37	0	1754627..1756162	-	511	26247777	xasA	c1921	-	amino acid antiporter
1845	 52.38	0	1756318..1757787	-	489	26247778	gadB	c1922	-	glutamate decarboxylase beta
1846	 46.67	0	1758079..1760874	-	931	26247779	pqqL	c1923	-	zinc protease pqqL
1847	 46.19	0	1760919..1763291	-	790	26247780	yddB	c1924	-	hypothetical protein
1848	 43.24	-1	1763329..1765014	-	561	26247781	yddA	c1925	-	ABC transporter ATP-binding protein
1849	 39.13	-1	1765305..1766477	-	390	26247782	ydeM	c1926	-	hypothetical protein
1850	 43.65	-1	1766514..1768229	-	571	26247783	ydeN	c1927	-	putative sulfatase ydeN precursor
1851	 39.24	-1	1768598..1769359	-	253	26247784	ydeO	c1928	-	transcriptional regulator YdeO
1852	 37.88	-2	1769435..1769632	-	65	26247785	-	c1929	-	hypothetical protein
1853	 49.65	0	1769880..1772159	-	759	26247786	ydeP	c1930	-	putative oxidoreductase
1854	 44.26	-1	1772498..1773412	-	304	26247787	ydeQ	c1931	-	fimbrial-like protein ydeQ precursor
1855	 43.45	-1	1773472..1773975	-	167	26247788	ydeR	c1932	-	fimbrial-like protein ydeR precursor
1856	 43.69	-1	1773988..1774518	-	176	26247789	ydeS	c1933	-	fimbrial-like protein ydeS precursor
1857	 44.34	-1	1774532..1777183	-	883	26247790	-	c1934	-	Outer membrane usher protein fimD precursor
1858	 45.29	0	1777225..1777935	-	236	26247791	-	c1935	-	chaperone protein fimC precursor
1859	 44.44	-1	1778297..1778908	-	203	26247792	-	c1936	-	Type-1 fimbrial protein, A chain precursor
1860	 46.74	0	1779636..1780418	-	260	26247793	-	c1937	-	hypothetical protein
1861	 49.05	0	1780528..1781475	+	315	26247794	oprR	c1938	-	putative transcriptional regulator YcjZ
1862	 47.90	0	1781157..1781609	+	150	26247795	-	c1939	-	hypothetical protein
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.