IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1727	 51.68	0	1630926..1631432	-	168	26247660	tpx	c1796	-	thiol peroxidase
1728	 54.27	0	1631509..1632516	+	335	26247661	ycjG	c1797	-	hypothetical protein
1729	 42.57	-1	1633510..1634148	-	212	26247662	-	c1800	-	hypothetical protein
1730	 48.55	0	1634219..1635151	-	310	26247663	-	c1801	-	hypothetical protein
1731	 46.89	0	1635277..1636176	+	299	26247664	-	c1802	-	putative transcriptional regulator YcjZ
1732	 48.56	0	1636492..1638126	+	544	26247665	mppA	c1803	-	periplasmic murein peptide-binding protein precursor
1733	 43.31	-1	1638177..1639208	-	343	26247666	ynaI	c1804	-	hypothetical protein
1734	 45.35	0	1639452..1639709	+	85	26247667	ynaJ	c1805	-	hypothetical protein
1735	 50.58	0	1639759..1640709	-	316	26247668	ydaA	c1806	-	universal stress protein UspE
1736	 50.60	0	1640861..1641613	-	250	161486234	fnr	c1807	-	fumarate/nitrate reduction transcriptional regulator
1737	 52.91	0	1641808..1642323	-	171	26247670	ogt	c1808	-	O-6-alkylguanine-DNA:cysteine-protein methyltransferase
1738	 42.19	-1	1642334..1642525	-	63	26247671	-	c1809	-	hypothetical protein
1739	 45.83	0	1642836..1643651	-	271	26247672	-	c1810	-	hypothetical protein
1740	 43.04	-1	1643745..1644053	+	102	26247673	-	c1811	-	hypothetical protein
1741	 40.85	-1	1644038..1644436	+	132	26247674	-	c1812	-	hypothetical protein
1742	 39.53	-1	1644184..1644312	-	42	26247675	-	c1813	-	hypothetical protein
1743	 53.90	0	1644631..1645194	+	187	26247676	ydaL	c1814	-	hypothetical protein
1744	 47.10	0	1645215..1646507	-	430	26247677	ydaM	c1815	-	hypothetical protein
1745	 51.32	0	1646702..1647685	+	327	26247678	zntB	c1816	-	zinc transporter
1746	 51.75	0	1648163..1649536	+	457	26247679	dbpA	c1817	-	ATP-dependent RNA helicase DbpA
1747	 49.15	0	1649665..1650600	-	311	26247680	ydaO	c1818	-	C32 tRNA thiolase
1748	 50.81	0	1650652..1650960	-	102	26247681	-	c1819	-	hypothetical protein
1749	 37.67	-2	1652469..1652837	-	122	26247682	-	c1820	-	hypothetical protein
1750	 47.14	0	1652926..1653432	-	168	26247683	ynaF	c1821	-	hypothetical protein
1751	 46.47	0	1653501..1654634	-	377	26247684	ompN	c1822	-	Outer membrane protein N precursor
1752	 53.45	0	1655000..1658524	-	1174	26247685	ydbK	c1823	-	pyruvate-flavodoxin oxidoreductase
1753	 49.11	0	1658595..1658930	-	111	26247686	-	c1824	-	hypothetical protein
1754	 53.85	0	1658909..1659064	+	51	26247687	-	c1825	-	hypothetical protein
1755	 47.82	0	1659061..1659495	-	144	26247688	hslJ	c1826	-	heat-inducible protein
1756	 50.00	0	1659594..1660583	-	329	26247689	ldhA	c1827	-	D-lactate dehydrogenase
1757	 51.82	0	1660791..1663430	+	879	26247690	ydbH	c1828	-	hypothetical protein
1758	 43.55	-1	1663427..1663612	+	61	26247691	ynbE	c1829	-	hypothetical protein
1759	 44.17	-1	1663587..1663946	+	119	26247692	ydbL	c1830	-	hypothetical protein
1760	 51.57	0	1670579..1671439	+	286	26247693	ydbC	c1832	-	putative oxidoreductase
1761	 44.00	-1	1671484..1671708	-	74	26247694	-	c1833	-	hypothetical protein
1762	 45.21	0	1671738..1672343	+	201	26247695	ynbA	c1834	-	hypothetical protein
1763	 43.03	-1	1672343..1673239	+	298	26247696	ynbB	c1835	-	hypothetical protein
1764	 51.54	0	1673255..1675012	+	585	26247697	ynbC	c1836	-	hypothetical protein
1765	 49.50	0	1674927..1676318	+	463	26247698	ynbD	c1837	-	hypothetical protein
1766	 51.58	0	1676303..1676965	+	220	26247699	-	c1838	-	hypothetical protein
1767	 51.98	0	1676372..1676977	-	201	26247700	acpD	c1839	-	azoreductase
1768	 53.82	0	1677235..1681080	+	1281	161486233	hrpA	c1840	-	ATP-dependent RNA helicase HrpA
1769	 51.31	0	1681353..1682153	+	266	26247702	ydcF	c1841	-	hypothetical protein
1770	 50.83	0	1682350..1683789	+	479	26247703	aldA	c1842	-	aldehyde dehydrogenase A
1771	 48.60	0	1683831..1684832	-	333	26247704	-	c1843	-	glyceraldehyde 3-phosphate dehydrogenase A
1772	 48.21	0	1685021..1685551	+	176	161486232	cybB	c1844	-	cytochrome b561
1773	 45.98	0	1685796..1685969	+	57	26247706	ydcA	c1845	-	hypothetical protein
1774	 53.72	0	1686126..1686596	+	156	26247707	-	c1846	-	hypothetical protein
1775	 47.98	0	1686634..1687698	-	354	26247708	ycdI	c1847	-	putative transcriptional regulator YdcI
1776	 53.05	0	1687774..1689117	+	447	26247709	ydcJ	c1848	-	hypothetical protein
1777	 50.97	0	1689342..1690997	+	551	26247710	mdoD	c1849	-	glucan biosynthesis protein D
1778	 41.99	-1	1691131..1691361	+	76	26247711	ydcH	c1850	-	hypothetical protein
1779	 42.88	-1	1691409..1691963	+	184	26247712	rimL	c1851	-	ribosomal-protein-L7/L12-serine acetyltransferase
1780	 47.91	0	1691955..1692935	-	326	26247713	ydcK	c1852	-	hypothetical protein
1781	 51.32	0	1692951..1694051	+	366	26247714	tehA	c1853	-	potassium-tellurite ethidium and proflavin transporter
1782	 46.80	0	1694048..1694641	+	197	26247715	tehB	c1854	-	tellurite resistance protein TehB
1783	 41.09	-1	1694925..1695053	-	42	26247716	-	c1855	-	hypothetical protein
1784	 44.69	0	1694944..1695612	+	222	26247717	ydcL	c1856	-	lipoprotein ydcL precursor
1785	 52.47	0	1695647..1696942	-	431	26247718	ydcO	c1857	-	hypothetical protein
1786	 49.53	0	1696911..1697447	+	178	26247719	ydcN	c1858	-	hypothetical protein
1787	 50.65	0	1697478..1699481	+	667	26247720	ydcP	c1859	-	putative protease ydcP precursor
1788	 48.92	0	1699573..1699803	-	76	26247721	yncJ	c1860	-	hypothetical protein
1789	 40.31	-1	1699860..1699988	-	42	26247722	-	c1861	-	hypothetical protein
1790	 46.57	0	1700015..1700218	+	67	26247723	-	c1862	-	hypothetical protein
1791	 50.96	0	1700297..1701703	+	468	26247724	ydcR	c1863	-	hypothetical protein
1792	 53.05	0	1701948..1703093	+	381	26247725	ydcS	c1864	-	ABC transporter periplasmic-binding protein
1793	 54.93	0	1703111..1704124	+	337	26247726	ydcT	c1865	-	ABC transporter ATP-binding protein
1794	 54.03	0	1704125..1705066	+	313	26247727	ydcU	c1866	-	ABC transporter permease
1795	 53.95	0	1705056..1705700	+	214	26247728	ydcV	c1867	-	ABC transporter permease
1796	 53.47	0	1705873..1707297	+	474	26247729	ydcW	c1869	-	gamma-aminobutyraldehyde dehydrogenase
1797	 44.98	0	1707609..1707857	+	82	26247730	-	c1870	-	hypothetical protein
1798	 52.56	0	1707943..1708176	+	77	26247731	ydc	c1871	-	hypothetical protein
1799	 52.67	0	1708177..1708626	-	149	26247732	ydcZ	c1872	-	hypothetical protein
1800	 51.89	0	1708623..1709204	-	193	26247733	yncA	c1873	-	acetyltransferase yncA
1801	 47.68	0	1709348..1709584	+	78	26247734	-	c1874	-	hypothetical protein
1802	 50.00	0	1711967..1713028	+	353	26247735	yncE	c1877	-	hypothetical protein
1803	 51.77	0	1713141..1714691	-	516	26247736	ansP	c1878	-	L-asparagine permease
1804	 46.89	0	1714907..1715083	+	58	26247737	-	c1879	-	hypothetical protein
1805	 43.33	-1	1715196..1715525	+	109	26247738	-	c1880	-	hypothetical protein
1806	 38.00	-2	1715945..1716094	-	49	26247739	-	c1881	-	hypothetical protein
1807	 56.84	+1	1716066..1716350	+	94	26247740	-	c1882	-	hypothetical protein
1808	 57.78	+1	1716369..1718327	+	652	26247741	-	c1883	-	hypothetical protein
1809	 44.26	-1	1718427..1719167	+	246	26247742	-	c1884	-	hypothetical protein
1810	 38.11	-2	1719505..1720740	+	411	26247743	-	c1885	-	hypothetical protein
1811	 43.39	-1	1720751..1721794	+	347	26247744	-	c1886	-	hypothetical protein
1812	 54.74	0	1721906..1722190	+	94	26247745	-	c1887	-	hypothetical protein
1813	 56.73	+1	1722209..1724614	+	801	26247746	-	c1888	-	hypothetical protein
1814	 35.82	-2	1724601..1725203	+	200	26247747	-	c1889	-	hypothetical protein
1815	 30.91	-2	1725540..1725992	+	150	26247748	-	c1890	-	hypothetical protein
1816	 28.99	-2	1726211..1726717	+	168	26247749	-	c1891	-	hypothetical protein
1817	 27.14	-2	1726714..1727181	+	155	26247750	-	c1892	-	hypothetical protein
1818	 35.42	-2	1727294..1727437	+	47	26247751	-	c1893	-	hypothetical protein
1819	 52.46	0	1728047..1728616	-	189	26247752	yddH	c1894	-	hypothetical protein
1820	 50.35	0	1728791..1729636	+	281	26247753	nhoA	c1895	-	N-hydroxyarylamine O-acetyltransferase
1821	 52.35	0	1729732..1730625	-	297	26247754	yddE	c1896	-	hypothetical protein
1822	 51.84	0	1730705..1731385	-	226	26247755	narV	c1897	-	respiratory nitrate reductase 2 gamma chain
1823	 55.75	+1	1731382..1732077	-	231	26247756	narW	c1898	-	respiratory nitrate reductase 2 delta chain
1824	 54.05	0	1732077..1733621	-	514	26247757	narY	c1899	-	respiratory nitrate reductase 2 beta chain
1825	 54.53	0	1733618..1737481	-	1287	26247758	narZ	c1900	-	respiratory nitrate reductase 2 alpha chain
1826	 49.03	0	1737453..1738841	-	462	26247759	narU	c1901	-	nitrite extrusion protein 2
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.