IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1082	 43.19	-1	1086202..1086414	+	70	26247008	cspG	c1123	-	cold shock protein CspG
1083	 42.80	-1	1086555..1086818	+	87	26247009	sfa	c1124	-	cold shock gene
1084	 39.66	-1	1086808..1086981	+	57	26247010	-	c1125	-	GnsB protein
1085	 39.66	-1	1086823..1086996	-	57	26247011	-	c1126	-	hypothetical protein
1086	 48.79	0	1087030..1088103	-	357	26247012	yccM	c1127	-	putative electron transport protein yccM
1087	 54.01	0	1088186..1090918	-	910	161486256	torS	c1128	-	hybrid sensory histidine kinase TorS
1088	 53.55	0	1091001..1092029	+	342	26247015	torT	c1130	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
1089	 53.54	0	1092002..1092694	-	230	26247016	torR	c1131	-	DNA-binding transcriptional regulator TorR
1090	 50.29	0	1092776..1093996	+	406	26247017	torC	c1132	-	cytochrome c-type protein torC
1091	 55.36	0	1093996..1096542	+	848	26247018	torA	c1133	-	trimethylamine-N-oxide reductase 1 precursor
1092	 52.83	0	1096539..1097138	+	199	161486255	torD	c1134	-	chaperone protein TorD
1093	 54.90	0	1097494..1097799	-	101	26247020	yccD	c1135	-	chaperone-modulator protein CbpM
1094	 53.31	0	1097799..1098719	-	306	26247021	cbpA	c1136	-	curved DNA-binding protein CbpA
1095	 51.20	0	1099254..1100210	+	318	26247022	agp	c1137	-	glucose-1-phosphatase/inositol phosphatase
1096	 49.80	0	1100241..1100495	+	84	26247023	-	c1138	-	hypothetical protein
1097	 47.37	0	1100533..1100760	-	75	26247024	yccJ	c1139	-	hypothetical protein
1098	 53.94	0	1100781..1101377	-	198	26247025	wrbA	c1140	-	TrpR binding protein WrbA
1099	 49.69	0	1101781..1101939	+	52	26247026	-	c1141	-	hypothetical protein
1100	 50.00	0	1101936..1102073	+	45	26247027	-	c1142	-	hypothetical protein
1101	 53.91	0	1102006..1103400	-	464	26247028	ycdG	c1143	-	putative purine permease ycdG
1102	 58.38	+1	1103355..1103909	-	184	26247029	-	c1144	-	putative flavin:NADH reductase ycdH
1103	 56.51	+1	1103860..1104450	-	196	26247030	-	c1145	-	hypothetical protein
1104	 58.09	+1	1104460..1105287	-	275	26247031	ycdJ	c1146	-	hypothetical protein
1105	 54.78	0	1105268..1105654	-	128	26247032	ycdK	c1147	-	hypothetical protein
1106	 55.92	+1	1105666..1106400	-	244	26247033	ycdL	c1148	-	isochorismatase family protein ycdL
1107	 54.48	0	1106358..1107539	-	393	26247034	-	c1149	-	putative monooxygenase ycdM
1108	 51.20	0	1107710..1108375	+	221	26247035	ycdC	c1150	-	putative transcriptional regulator YcdC
1109	 56.04	+1	1108415..1112377	-	1320	161486254	putA	c1151	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1110	 36.67	-2	1112432..1112641	+	69	26247037	-	c1152	-	hypothetical protein
1111	 39.06	-2	1112529..1112720	-	63	26247038	-	c1153	-	hypothetical protein
1112	 53.61	0	1112800..1114308	+	502	26247039	putP	c1154	-	Sodium/proline symporter
1113	 54.43	0	1114592..1115359	+	255	26247040	-	c1155	-	putative cytochrome
1114	 50.80	0	1115417..1116544	+	375	26247041	ycdO	c1156	-	hypothetical protein
1115	 53.85	0	1116550..1117821	+	423	26247042	ycdB	c1157	-	hypothetical protein
1116	 34.81	-2	1117958..1118092	-	44	26247043	-	c1158	-	hypothetical protein
1117	 52.60	0	1118312..1119235	+	307	26247044	phoH	c1159	-	hypothetical protein
1118	 43.72	-1	1119285..1119698	-	137	26247045	ycdP	c1160	-	hypothetical protein
1119	 46.98	0	1119700..1121025	-	441	26247046	ycdQ	c1161	-	N-glycosyltransferase PgaC
1120	 44.43	-1	1121018..1123036	-	672	26247047	ycdR	c1162	-	lipoprotein ycdR precursor
1121	 46.99	0	1123045..1125468	-	807	26247048	ycdS	c1163	-	outer membrane protein PgaA
1122	 37.83	-2	1125933..1127423	+	496	26247049	ycdT	c1164	-	hypothetical protein
1123	 48.71	0	1127702..1128904	+	400	26247050	-	c1165	-	P4 family integrase
1124	 32.45	-2	1129092..1130909	-	605	26247051	-	c1166	-	hypothetical protein
1125	 43.03	-1	1131195..1131359	+	54	26247052	-	c1167	-	hypothetical protein
1126	 47.07	0	1131407..1131799	+	130	26247053	-	c1168	-	hypothetical protein
1127	 44.18	-1	1132071..1132319	+	82	26247054	alpA	c1169	-	prophage CP4-57 regulatory protein alpA
1128	 42.16	-1	1132944..1134404	+	486	26247055	-	c1170	-	hypothetical protein
1129	 44.28	-1	1135368..1135961	+	197	26247056	-	c1171	-	hypothetical protein
1130	 56.98	+1	1136060..1136317	-	85	26247057	-	c1172	-	hypothetical protein
1131	 56.52	+1	1136063..1136269	+	68	26247058	-	c1173	-	hypothetical protein
1132	 49.93	0	1136438..1138438	-	666	26247059	-	c1174	-	hypothetical protein
1133	 54.67	0	1138353..1139519	-	388	26247060	-	c1175	-	putative aminotransferase
1134	 54.49	0	1139941..1140564	-	207	26247061	-	c1176	-	hypothetical protein
1135	 55.43	0	1142429..1142953	+	174	26247062	-	c1183	-	hypothetical protein
1136	 51.41	0	1142992..1143417	+	141	26247063	-	c1184	-	hypothetical protein
1137	 49.70	0	1143016..1143180	-	54	26247064	-	c1185	-	hypothetical protein
1138	 55.28	0	1143727..1144956	-	409	26247065	-	c1186	-	3-oxoacyl-(acyl carrier protein) synthase II
1139	 56.69	+1	1144953..1145684	-	243	26247066	fabG	c1187	-	3-ketoacyl-(acyl-carrier-protein) reductase
1140	 59.78	+1	1145684..1146148	-	154	26247067	-	c1188	-	hypothetical protein
1141	 60.31	+1	1146145..1147323	-	392	26247068	-	c1189	-	3-oxoacyl-(acyl carrier protein) synthase I
1142	 57.09	+1	1147316..1147900	-	194	26247069	-	c1190	-	hypothetical protein
1143	 58.09	+1	1147897..1150215	-	772	26247070	-	c1191	-	hypothetical protein
1144	 54.29	0	1150184..1150789	-	201	26247071	-	c1192	-	hypothetical protein
1145	 54.37	0	1150786..1151208	-	140	26247072	-	c1193	-	hypothetical protein
1146	 57.73	+1	1151212..1152834	-	540	26247073	-	c1194	-	hypothetical protein
1147	 61.79	+2	1152806..1152928	-	40	26247074	-	c1195	-	hypothetical protein
1148	 50.26	0	1152879..1153256	-	125	26247075	-	c1196	-	hypothetical protein
1149	 47.83	0	1153219..1154577	-	452	26247076	-	c1197	-	hypothetical protein
1150	 51.97	0	1154574..1155158	-	194	26247077	-	c1198	-	hypothetical protein
1151	 48.02	0	1155160..1155411	-	83	26247078	-	c1199	-	acyl carrier protein
1152	 49.22	0	1155423..1155680	-	85	26247079	-	c1200	-	putative acyl carrier protein
1153	 51.07	0	1155655..1156494	-	279	26247080	-	c1201	-	putative phospholipid biosynthesis acyltransferase
1154	 53.68	0	1156473..1157219	-	248	26247081	-	c1202	-	hypothetical protein
1155	 45.89	0	1157236..1158294	-	352	26247082	-	c1203	-	putative O-methyltransferase
1156	 41.79	-1	1158359..1158748	-	129	26247083	-	c1204	-	hypothetical protein
1157	 56.29	+1	1159313..1162039	+	908	26247084	-	c1205	-	hypothetical protein
1158	 55.64	0	1161999..1163231	+	410	26247085	-	c1206	-	hypothetical protein
1159	 51.98	0	1163191..1164804	+	537	26247086	-	c1207	-	hypothetical protein
1160	 53.70	0	1165325..1165702	+	125	26247087	-	c1208	-	hypothetical protein
1161	 47.73	0	1166202..1166597	+	131	26247088	-	c1209	-	hypothetical protein
1162	 50.85	0	1166395..1166571	-	58	26247089	-	c1210	-	hypothetical protein
1163	 55.85	+1	1167823..1168386	+	187	26247090	-	c1213	-	hypothetical protein
1164	 47.50	0	1168463..1168702	-	79	26247091	-	c1214	-	Cea protein
1165	 47.14	0	1169460..1169669	+	69	26247092	-	c1215	-	entry exclusion protein 2
1166	 49.36	0	1169792..1169947	-	51	26247093	-	c1216	-	hypothetical protein
1167	 50.16	0	1169968..1170276	-	102	26247094	-	c1217	-	hypothetical protein
1168	 49.60	0	1170358..1170861	-	167	26247095	-	c1218	-	hypothetical protein
1169	 53.47	0	1170833..1171582	-	249	26247096	-	c1219	-	putative transposase
1170	 41.13	-1	1172485..1173561	+	358	26247097	-	c1220	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1171	 35.47	-2	1173449..1173682	+	77	26247098	-	c1221	-	hypothetical protein
1172	 37.12	-2	1174032..1174163	+	43	26247099	-	c1222	-	hypothetical protein
1173	 56.84	+1	1174628..1175380	-	250	26247100	-	c1224	-	transposase insF
1174	 50.67	0	1175364..1175588	-	74	26247101	-	c1225	-	transposase insE
1175	 50.68	0	1176756..1177049	+	97	26247102	mchB	c1227	-	MchB protein
1176	 43.26	-1	1177321..1178871	+	516	26247103	mchC	c1229	-	MchC protein
1177	 42.38	-1	1178897..1179349	+	150	26247104	mchD	c1230	-	MchD protein
1178	 42.35	-1	1179502..1180776	+	424	26247105	mchE	c1231	-	microcin H47 secretion protein
1179	 46.00	0	1180751..1182865	+	704	26247106	mchF	c1232	-	microcin H47 secretion ATP-binding protein
1180	 32.90	-2	1183572..1184258	-	228	26247107	-	c1233	-	hypothetical protein
1181	 36.09	-2	1184358..1184828	-	156	26247108	-	c1234	-	hypothetical protein
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.