IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
743	 52.49	0	841019..841279	-	86	90111171	ybiM	b0806	-	predicted protein
744	 54.15	0	841555..842481	+	308	162135897	rlmF	b0807	-	predicted SAM-dependent methyltransferase
745	 53.32	0	842478..844703	-	741	90111173	ybiO	b0808	-	predicted mechanosensitive channel
746	 53.94	0	844964..845686	-	240	16128777	glnQ	b0809	-	glutamine transporter subunit
747	 53.48	0	845683..846342	-	219	16128778	glnP	b0810	-	glutamine transporter subunit
748	 48.73	0	846481..847227	-	248	16128779	glnH	b0811	-	glutamine transporter subunit
749	 49.01	0	847631..848134	-	167	16128780	dps	b0812	-	Fe-binding and storage protein
750	 53.49	0	848433..849320	-	295	16128781	rhtA	b0813	-	threonine and homoserine efflux system
751	 51.36	0	849673..850188	+	171	16128782	ompX	b0814	-	outer membrane protein
752	 48.36	0	850237..851820	-	527	16128783	ybiP	b0815	-	predicted hydrolase, inner membrane
753	 50.74	0	851894..852163	+	89	16128784	yliL	b0816	-	predicted protein
754	 54.06	0	852406..852873	+	155	16128785	mntR	b0817	-	DNA-binding transcriptional regulator of mntH
755	 52.28	0	852870..853988	+	372	16128786	ybiR	b0818	-	predicted transporter
756	 52.99	0	854047..854967	-	306	16128787	ybiS	b0819	-	conserved protein
757	 52.79	0	855186..856778	+	530	16128788	ybiT	b0820	-	fused predicted transporter subunits of ABC superfamily: ATP-binding components
758	 55.61	0	857019..858284	-	421	16128789	ybiU	b0821	-	predicted protein
759	 46.69	0	858436..859251	-	271	16128790	ybiV	b0822	-	predicted hydrolase
760	 54.99	0	859397..861829	-	810	16128791	ybiW	b0823	-	predicted pyruvate formate lyase
761	 53.72	0	861835..862761	-	308	16128792	ybiY	b0824	-	predicted pyruvate formate lyase activating enzyme
762	 54.15	0	862865..863527	+	220	90111174	fsaA	b0825	-	fructose-6-phosphate aldolase 1
763	 55.20	0	863603..864352	-	249	16128794	moeB	b0826	-	molybdopterin synthase sulfurylase
764	 56.39	+1	864352..865587	-	411	16128795	moeA	b0827	-	molybdopterin biosynthesis protein
765	 56.52	+1	865791..866756	+	321	16128796	iaaA	b0828	-	L-asparaginase
766	 54.01	0	866743..868614	+	623	145698235	gsiA	b0829	-	fused predicted peptide transport subunits of ABC superfamily: ATP-binding components
767	 52.24	0	868634..870172	+	512	16128798	gsiB	b0830	-	predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily
768	 53.53	0	870190..871110	+	306	16128799	gsiC	b0831	-	predicted peptide transporter subunit: membrane component of ABC superfamily
769	 53.07	0	871113..872024	+	303	16128800	gsiD	b0832	-	predicted peptide transporter subunit: membrane component of ABC superfamily
770	 41.59	-2	872202..874550	+	782	16128801	yliE	b0833	-	conserved inner membrane protein
771	 43.49	-1	874558..875886	+	442	16128802	yliF	b0834	-	predicted diguanylate cyclase
772	 52.64	0	875933..877258	-	441	16128803	yliG	b0835	-	predicted SAM-dependent methyltransferase
773	 48.70	0	877471..877854	+	127	16128804	bssR	b0836	-	conserved protein
774	 51.70	0	877965..879080	+	371	16128805	yliI	b0837	-	predicted dehydrogenase
775	 51.99	0	879077..879703	-	208	90111175	yliJ	b0838	-	predicted glutathione S-transferase
776	 51.70	0	879950..881152	+	400	16128807	dacC	b0839	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
777	 50.72	0	881199..881957	-	252	16128808	deoR	b0840	-	DNA-binding transcriptional repressor
778	 51.59	0	882015..882611	-	198	16128809	ybjG	b0841	-	undecaprenyl pyrophosphate phosphatase
779	 52.39	0	882896..884128	+	410	16128810	cmr	b0842	-	multidrug efflux system protein
780	 52.98	0	884169..884453	-	94	16128811	ybjH	b0843	-	predicted protein
781	 45.59	-1	884539..885354	-	271	90111176	ybjI	b0844	-	conserved protein
782	 54.92	0	885354..886562	-	402	16128813	ybjJ	b0845	-	predicted transporter
783	 51.58	0	886646..887182	+	178	16128814	ybjK	b0846	-	predicted DNA-binding transcriptional regulator
784	 51.54	0	887357..889042	-	561	16128815	ybjL	b0847	-	predicted transporter
785	 49.74	0	889312..889689	+	125	16128816	ybjM	b0848	-	predicted inner membrane protein
786	 44.96	-1	889719..889976	-	85	16128817	grxA	b0849	-	glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a)
787	 50.35	0	890136..890423	+	95	16128818	ybjC	b0850	-	predicted inner membrane protein
788	 52.56	0	890407..891129	+	240	16128819	nfsA	b0851	-	nitroreductase A, NADPH-dependent, FMN-dependent
789	 56.26	+1	891190..892092	+	300	16128820	rimK	b0852	-	ribosomal protein S6 modification protein
790	 48.43	0	892180..892656	+	158	16128821	ybjN	b0853	-	predicted oxidoreductase
791	 50.85	0	893007..894119	+	370	16128822	potF	b0854	-	putrescine transporter subunit: periplasmic-binding component of ABC superfamily
792	 55.20	0	894214..895347	+	377	90111177	potG	b0855	-	putrescine transporter subunit: ATP-binding component of ABC superfamily
793	 50.94	0	895357..896310	+	317	16128824	potH	b0856	-	putrescine transporter subunit: membrane component of ABC superfamily
794	 54.73	0	896307..897152	+	281	16128825	potI	b0857	-	putrescine transporter subunit: membrane component of ABC superfamily
795	 52.15	0	897212..897700	+	162	16128826	ybjO	b0858	-	predicted inner membrane protein
796	 54.61	0	897741..898868	+	375	16128827	rumB	b0859	-	23S rRNA m(5)U747 methyltransferase
797	 44.81	-1	899067..899798	-	243	16128828	artJ	b0860	-	arginine transporter subunit
798	 52.17	0	900089..900757	-	222	16128829	artM	b0861	-	arginine transporter subunit
799	 54.95	0	900757..901473	-	238	16128830	artQ	b0862	-	arginine transporter subunit
800	 50.27	0	901480..902211	-	243	16128831	artI	b0863	-	arginine transporter subunit
801	 52.67	0	902229..902957	-	242	16128832	artP	b0864	-	arginine transporter subunit
802	 53.88	0	903175..903690	-	171	16128833	ybjP	b0865	-	predicted lipoprotein
803	 54.01	0	903816..904139	+	107	16128834	ybjQ	b0866	-	conserved protein
804	 56.08	+1	904136..904966	+	276	16128835	amiD	b0867	-	predicted amidase and lipoprotein
805	 54.44	0	904963..905976	-	337	90111178	ybjS	b0868	-	predicted NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain
806	 55.00	0	906075..907505	-	476	90111179	ybjT	b0869	-	conserved protein with NAD(P)-binding Rossmann-fold domain
807	 56.19	+1	907516..908517	-	333	16128838	ltaE	b0870	-	L-allo-threonine aldolase, PLP-dependent
808	 54.04	0	908554..910272	-	572	16128839	poxB	b0871	-	pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding
809	 55.42	0	910405..911373	-	322	16128840	hcr	b0872	-	HCP oxidoreductase, NADH-dependent
810	 54.75	0	911385..913037	-	550	90111180	hcp	b0873	-	hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases
811	 48.22	0	913181..914080	-	299	90111181	ybjE	b0874	-	predicted transporter
812	 52.30	0	914575..915270	-	231	16128843	aqpZ	b0875	-	aquaporin
813	 53.10	0	915696..917354	+	552	16128844	ybjD	b0876	-	conserved protein with nucleoside triphosphate hydrolase domain
814	 49.95	0	917351..918343	-	330	16128845	ybjX	b0877	-	conserved protein
815	 53.05	0	918458..919573	+	371	90111182	macA	b0878	-	macrolide transporter subunit, membrane fusion protein (MFP) component
816	 53.93	0	919570..921516	+	648	16128847	macB	b0879	-	fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component
817	 48.44	0	921589..921813	-	74	16128848	cspD	b0880	-	cold shock protein homolog
818	 45.17	-1	922136..922456	+	106	16128849	clpS	b0881	-	regulatory protein for ClpA substrate specificity
819	 52.61	0	922487..924763	+	758	16128850	clpA	b0882	-	ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity
820	 48.40	0	925448..925666	-	72	16128851	infA	b0884	-	translation initiation factor IF-1
821	 54.04	0	925951..926655	-	234	16128852	aat	b0885	-	leucyl/phenylalanyl-tRNA-protein transferase
822	 53.77	0	926697..928418	-	573	16128853	cydC	b0886	-	fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component
823	 53.65	0	928419..930185	-	588	16128854	cydD	b0887	-	fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component
824	 53.62	0	930308..931273	-	321	16128855	trxB	b0888	-	thioredoxin reductase, FAD/NAD(P)-binding
825	 47.88	0	931818..932312	+	164	16128856	lrp	b0889	-	DNA-binding transcriptional dual regulator, leucine-binding
826	 54.01	0	932447..936436	+	1329	16128857	ftsK	b0890	-	DNA-binding membrane protein required for chromosome resolution and partitioning
827	 50.98	0	936595..937206	+	203	145698236	lolA	b0891	-	chaperone for lipoproteins
828	 53.57	0	937217..938560	+	447	16128859	rarA	b0892	-	recombination protein
829	 52.67	0	938651..939943	+	430	16128860	serS	b0893	-	seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine
830	 52.72	0	940182..942626	+	814	90111183	dmsA	b0894	-	dimethyl sulfoxide reductase, anaerobic, subunit A
831	 51.78	0	942637..943254	+	205	16128862	dmsB	b0895	-	dimethyl sulfoxide reductase, anaerobic, subunit B
832	 54.63	0	943256..944119	+	287