IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
723	 48.65	0	819107..819811	+	234	16128754	ybhL	b0786	-	predicted inner membrane protein
724	 42.30	-1	820016..820729	+	237	16128755	ybhM	b0787	-	conserved inner membrane protein
725	 52.35	0	820765..821721	-	318	16128756	ybhN	b0788	-	conserved inner membrane protein
726	 54.43	0	821721..822962	-	413	16128757	ybhO	b0789	-	cardiolipin synthase 2
727	 55.51	0	822959..823720	-	253	16128758	ybhP	b0790	-	predicted DNase
728	 54.50	0	823853..824263	+	136	16128759	ybhQ	b0791	-	predicted inner membrane protein
729	 52.30	0	824225..825331	-	368	16128760	ybhR	b0792	-	predicted transporter subunit: membrane component of ABC superfamily
730	 55.11	0	825342..826475	-	377	16128761	ybhS	b0793	-	predicted transporter subunit: membrane component of ABC superfamily
731	 55.56	0	826468..828204	-	578	90111168	ybhF	b0794	-	fused predicted transporter subunits of ABC superfamily: ATP-binding components
732	 57.06	+1	828197..829195	-	332	16128763	ybhG	b0795	-	predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor
733	 54.17	0	829195..829866	-	223	162135896	ybiH	b0796	-	predicted DNA-binding transcriptional regulator
734	 56.70	+1	830095..831459	+	454	16128765	rhlE	b0797	-	RNA helicase
735	 50.31	0	831691..832173	-	160	16128766	ybiA	b0798	-	conserved protein
736	 54.07	0	832293..834443	+	716	16128767	dinG	b0799	-	ATP-dependent DNA helicase
737	 55.66	0	834471..835433	+	320	16128768	ybiB	b0800	-	predicted transferase/phosphorylase
738	 55.62	0	835574..836659	+	361	16128769	ybiC	b0801	-	predicted dehydrogenase
739	 50.57	0	836888..837148	-	86	16128770	ybiJ	b0802	-	predicted protein
740	 52.06	0	837413..837679	-	88	16128771	ybiI	b0803	-	conserved protein
741	 52.95	0	837753..838430	-	225	90111170	ybiX	b0804	-	conserved protein
742	 53.83	0	838472..840754	-	760	16128773	fiu	b0805	-	predicted iron outer membrane transporter
743	 52.49	0	841019..841279	-	86	90111171	ybiM	b0806	-	predicted protein
744	 54.15	0	841555..842481	+	308	162135897	rlmF	b0807	-	predicted SAM-dependent methyltransferase
745	 53.32	0	842478..844703	-	741	90111173	ybiO	b0808	-	predicted mechanosensitive channel
746	 53.94	0	844964..845686	-	240	16128777	glnQ	b0809	-	glutamine transporter subunit
747	 53.48	0	845683..846342	-	219	16128778	glnP	b0810	-	glutamine transporter subunit
748	 48.73	0	846481..847227	-	248	16128779	glnH	b0811	-	glutamine transporter subunit
749	 49.01	0	847631..848134	-	167	16128780	dps	b0812	-	Fe-binding and storage protein
750	 53.49	0	848433..849320	-	295	16128781	rhtA	b0813	-	threonine and homoserine efflux system
751	 51.36	0	849673..850188	+	171	16128782	ompX	b0814	-	outer membrane protein
752	 48.36	0	850237..851820	-	527	16128783	ybiP	b0815	-	predicted hydrolase, inner membrane
753	 50.74	0	851894..852163	+	89	16128784	yliL	b0816	-	predicted protein
754	 54.06	0	852406..852873	+	155	16128785	mntR	b0817	-	DNA-binding transcriptional regulator of mntH
755	 52.28	0	852870..853988	+	372	16128786	ybiR	b0818	-	predicted transporter
756	 52.99	0	854047..854967	-	306	16128787	ybiS	b0819	-	conserved protein
757	 52.79	0	855186..856778	+	530	16128788	ybiT	b0820	-	fused predicted transporter subunits of ABC superfamily: ATP-binding components
758	 55.61	0	857019..858284	-	421	16128789	ybiU	b0821	-	predicted protein
759	 46.69	0	858436..859251	-	271	16128790	ybiV	b0822	-	predicted hydrolase
760	 54.99	0	859397..861829	-	810	16128791	ybiW	b0823	-	predicted pyruvate formate lyase
761	 53.72	0	861835..862761	-	308	16128792	ybiY	b0824	-	predicted pyruvate formate lyase activating enzyme
762	 54.15	0	862865..863527	+	220	90111174	fsaA	b0825	-	fructose-6-phosphate aldolase 1
763	 55.20	0	863603..864352	-	249	16128794	moeB	b0826	-	molybdopterin synthase sulfurylase
764	 56.39	+1	864352..865587	-	411	16128795	moeA	b0827	-	molybdopterin biosynthesis protein
765	 56.52	+1	865791..866756	+	321	16128796	iaaA	b0828	-	L-asparaginase
766	 54.01	0	866743..868614	+	623	145698235	gsiA	b0829	-	fused predicted peptide transport subunits of ABC superfamily: ATP-binding components
767	 52.24	0	868634..870172	+	512	16128798	gsiB	b0830	-	predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily
768	 53.53	0	870190..871110	+	306	16128799	gsiC	b0831	-	predicted peptide transporter subunit: membrane component of ABC superfamily
769	 53.07	0	871113..872024	+	303	16128800	gsiD	b0832	-	predicted peptide transporter subunit: membrane component of ABC superfamily
770	 41.59	-2	872202..874550	+	782	16128801	yliE	b0833	-	conserved inner membrane protein
771	 43.49	-1	874558..875886	+	442	16128802	yliF	b0834	-	predicted diguanylate cyclase
772	 52.64	0	875933..877258	-	441	16128803	yliG	b0835	-	predicted SAM-dependent methyltransferase
773	 48.70	0	877471..877854	+	127	16128804	bssR	b0836	-	conserved protein
774	 51.70	0	877965..879080	+	371	16128805	yliI	b0837	-	predicted dehydrogenase
775	 51.99	0	879077..879703	-	208	90111175	yliJ	b0838	-	predicted glutathione S-transferase
776	 51.70	0	879950..881152	+	400	16128807	dacC	b0839	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
777	 50.72	0	881199..881957	-	252	16128808	deoR	b0840	-	DNA-binding transcriptional repressor
778	 51.59	0	882015..882611	-	198	16128809	ybjG	b0841	-	undecaprenyl pyrophosphate phosphatase
779	 52.39	0	882896..884128	+	410	16128810	cmr	b0842	-	multidrug efflux system protein
780	 52.98	0	884169..884453	-	94	16128811	ybjH	b0843	-	predicted protein
781	 45.59	-1	884539..885354	-	271	90111176	ybjI	b0844	-	conserved protein
782	 54.92	0	885354..886562	-	402	16128813	ybjJ	b0845	-	predicted transporter
783	 51.58	0	886646..887182	+	178	16128814	ybjK	b0846	-	predicted DNA-binding transcriptional regulator
784	 51.54	0	887357..889042	-	561	16128815	ybjL	b0847	-	predicted transporter
785	 49.74	0	889312..889689	+	125	16128816	ybjM	b0848	-	predicted inner membrane protein
786	 44.96	-1	889719..889976	-	85	16128817	grxA	b0849	-	glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a)
787	 50.35	0	890136..890423	+	95	16128818	ybjC	b0850	-	predicted inner membrane protein
788	 52.56	0	890407..891129	+	240	16128819	nfsA	b0851	-	nitroreductase A, NADPH-dependent, FMN-dependent
789	 56.26	+1	891190..892092	+	300	16128820	rimK	b0852	-	ribosomal protein S6 modification protein
790	 48.43	0	892180..892656	+	158	16128821	ybjN	b0853	-	predicted oxidoreductase
791	 50.85	0	893007..894119	+	370	16128822	potF	b0854	-	putrescine transporter subunit: periplasmic-binding component of ABC superfamily
792	 55.20	0	894214..895347	+	377	90111177	potG	b0855	-	putrescine transporter subunit: ATP-binding component of ABC superfamily
793	 50.94	0	895357..896310	+	317	16128824	potH	b0856	-	putrescine transporter subunit: membrane component of ABC superfamily
794	 54.73	0	896307..897152	+	281	16128825	potI	b0857	-	putrescine transporter subunit: membrane component of ABC superfamily
795	 52.15	0	897212..897700	+	162	16128826	ybjO	b0858	-	predicted inner membrane protein
796	 54.61	0	897741..898868	+	375	16128827	rumB	b0859	-	23S rRNA m(5)U747 methyltransferase
797	 44.81	-1	899067..899798	-	243	16128828	artJ	b0860	-	arginine transporter subunit
798	 52.17	0	900089..900757	-	222	16128829	artM	b0861	-	arginine transporter subunit
799	 54.95	0	900757..901473	-	238	16128830	artQ	b0862	-	arginine transporter subunit
800	 50.27	0	901480..902211	-	243	16128831	artI	b0863	-	arginine transporter subunit
801	 52.67	0	902229..902957	-	242	16128832	artP	b0864	-	arginine transporter subunit
802	 53.88	0	903175..903690	-	171	16128833	ybjP	b0865	-	predicted lipoprotein
803	 54.01	0	903816..904139	+	107	16128834	ybjQ	b0866	-	conserved protein
804	 56.08	+1	904136..904966	+	276	16128835	amiD	b0867	-	predicted amidase and lipoprotein
805	 54.44	0	904963..905976	-	337	90111178	ybjS	b0868	-	predicted NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain
806	 55.00	0	906075..907505	-	476	90111179	ybjT	b0869	-	conserved protein with NAD(P)-binding Rossmann-fold domain
807	 56.19	+1	907516..908517	-	333	16128838	ltaE	b0870	-	L-allo-threonine aldolase, PLP-dependent
808	 54.04	0	908554..910272	-	572	16128839	poxB	b0871	-	pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding
809	 55.42	0	910405..911373	-	322	16128840	hcr	b0872	-	HCP oxidoreductase, NADH-dependent
810	 54.75	0	911385..913037	-	550	90111180	hcp	b0873	-	hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases
811	 48.22	0	913181..914080	-	299	90111181	ybjE	b0874	-	predicted transporter
812	 52.30	0	914575..915270	-	231	16128843	aqpZ	b0875	-	aquaporin
813	 53.10	0	915696..917354	+	552	16128844	ybjD	b0876	-	conserved protein with nucleoside triphosphate hydrolase domain
814	 49.95	0	917351..918343	-	330	16128845	ybjX	b0877	-	conserved protein
815	 53.05	0	918458..919573	+	371	90111182	macA	b0878	-	macrolide transporter subunit, membrane fusion protein (MFP) component
816	 53.93	0	919570..921516	+	648	16128847	macB	b0879	-	fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component
817	 48.44	0	921589..921813	-	74	16128848	cspD	b0880	-	cold shock protein homolog
818	 45.17	-1	922136..922456	+	106	16128849	clpS	b0881	-	regulatory protein for ClpA substrate specificity
819	 52.61	0	922487..924763	+	758	16128850	clpA	b0882	-	ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity
820	 48.40	0	925448..925666	-	72	16128851	infA	b0884	-	translation initiation factor IF-1
821	 54.04	0	925951..926655	-	234	16128852	aat	b0885	-	leucyl/phenylalanyl-tRNA-protein transferase
822	 53.77	0	926697..928418	-	573	16128853	cydC	b0886	-	fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component
51.16	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.