IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
677	 51.75	0	773419..773532	+	37	94541102	ybgT	b4515	-	conserved protein
678	 49.66	0	773532..773825	+	97	16128710	ybgE	b0735	-	conserved inner membrane protein
679	 49.63	0	773975..774379	+	134	16128711	ybgC	b0736	-	predicted acyl-CoA thioesterase
680	 50.51	0	774376..775068	+	230	16128712	tolQ	b0737	-	membrane spanning protein in TolA-TolQ-TolR complex
681	 51.75	0	775072..775500	+	142	16128713	tolR	b0738	-	membrane spanning protein in TolA-TolQ-TolR complex
682	 52.29	0	775565..776830	+	421	16128714	tolA	b0739	-	membrane anchored protein in TolA-TolQ-TolR complex
683	 53.13	0	776963..778255	+	430	16128715	tolB	b0740	-	periplasmic protein
684	 51.34	0	778290..778811	+	173	16128716	pal	b0741	-	peptidoglycan-associated outer membrane lipoprotein
685	 49.49	0	778821..779612	+	263	16128717	ybgF	b0742	-	predicted protein
686	 50.19	0	781308..782351	+	347	16128718	nadA	b0750	-	quinolinate synthase, subunit A
687	 48.19	0	782389..783108	+	239	16128719	pnuC	b0751	-	predicted nicotinamide mononucleotide transporter
688	 53.08	0	783105..784046	-	313	16128720	zitB	b0752	-	zinc efflux system
689	 50.39	0	784160..784540	-	126	16128721	ybgS	b0753	-	conserved protein
690	 52.14	0	784856..785908	+	350	16128722	aroG	b0754	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible
691	 51.00	0	786066..786818	-	250	16128723	gpmA	b0755	-	phosphoglyceromutase 1
692	 55.62	0	787020..788060	-	346	16128724	galM	b0756	-	galactose-1-epimerase (mutarotase)
693	 52.92	0	788054..789202	-	382	16128725	galK	b0757	-	galactokinase
694	 55.78	0	789206..790252	-	348	16128726	galT	b0758	-	galactose-1-phosphate uridylyltransferase
695	 54.38	0	790262..791278	-	338	49176045	galE	b0759	-	UDP-galactose-4-epimerase
696	 52.68	0	791539..793011	-	490	16128728	modF	b0760	-	fused molybdate transporter subunits of ABC superfamily: ATP-binding components
697	 52.60	0	793079..793867	-	262	16128729	modE	b0761	-	DNA-binding transcriptional dual regulator
698	 41.33	-2	793996..794145	+	49	16128730	ybhT	b0762	-	predicted protein
699	 50.90	0	794312..795085	+	257	16128731	modA	b0763	-	molybdate transporter subunit
700	 54.06	0	795085..795774	+	229	16128732	modB	b0764	-	molybdate transporter subunit
701	 53.54	0	795777..796835	+	352	16128733	modC	b0765	-	molybdate transporter subunit
702	 51.53	0	796836..797654	-	272	16128734	ybhA	b0766	-	predicted hydrolase
703	 55.12	0	797809..798804	+	331	16128735	pgl	b0767	-	6-phosphogluconolactonase
704	 44.76	-1	798845..799798	-	317	145698233	ybhD	b0768	-	predicted DNA-binding transcriptional regulator
705	 48.81	0	799982..801034	+	350	16128737	ybhH	b0769	-	conserved protein
706	 49.79	0	801110..802543	+	477	16128738	ybhI	b0770	-	predicted transporter
707	 51.46	0	802726..804987	+	753	90111167	ybhJ	b0771	-	predicted hydratase
708	 53.35	0	805221..806504	-	427	16128740	ybhC	b0772	-	predicted pectinesterase
709	 52.41	0	806656..807132	-	158	16128741	ybhB	b0773	-	predicted kinase inhibitor
710	 56.28	+1	807191..808480	-	429	16128742	bioA	b0774	-	7,8-diaminopelargonic acid synthase, PLP-dependent
711	 55.52	0	808567..809607	+	346	16128743	bioB	b0775	-	biotin synthase
712	 58.01	+1	809604..810758	+	384	16128744	bioF	b0776	-	8-amino-7-oxononanoate synthase
713	 56.48	+1	810745..811500	+	251	16128745	bioC	b0777	-	predicted methltransferase, enzyme of biotin synthesis
714	 53.69	0	811493..812170	+	225	16128746	bioD	b0778	-	dethiobiotin synthetase
715	 39.13	-2	812337..812474	-	45	145698234	ybhU	b4591	-	hypothetical protein
716	 53.56	0	812749..814770	+	673	16128747	uvrB	b0779	-	excinulease of nucleotide excision repair, DNA damage recognition component
717	 51.38	0	814962..815870	-	302	16128748	ybhK	b0780	-	predicted transferase with NAD(P)-binding Rossmann-fold domain
718	 54.14	0	816267..817256	+	329	16128749	moaA	b0781	-	molybdopterin biosynthesis protein A
719	 52.05	0	817278..817790	+	170	16128750	moaB	b0782	-	molybdopterin biosynthesis protein B
720	 55.97	+1	817793..818278	+	161	16128751	moaC	b0783	-	molybdopterin biosynthesis, protein C
721	 55.69	0	818271..818516	+	81	16128752	moaD	b0784	-	molybdopterin synthase, small subunit
722	 56.73	+1	818518..818970	+	150	16128753	moaE	b0785	-	molybdopterin synthase, large subunit
723	 48.65	0	819107..819811	+	234	16128754	ybhL	b0786	-	predicted inner membrane protein
724	 42.30	-1	820016..820729	+	237	16128755	ybhM	b0787	-	conserved inner membrane protein
725	 52.35	0	820765..821721	-	318	16128756	ybhN	b0788	-	conserved inner membrane protein
726	 54.43	0	821721..822962	-	413	16128757	ybhO	b0789	-	cardiolipin synthase 2
727	 55.51	0	822959..823720	-	253	16128758	ybhP	b0790	-	predicted DNase
728	 54.50	0	823853..824263	+	136	16128759	ybhQ	b0791	-	predicted inner membrane protein
729	 52.30	0	824225..825331	-	368	16128760	ybhR	b0792	-	predicted transporter subunit: membrane component of ABC superfamily
730	 55.11	0	825342..826475	-	377	16128761	ybhS	b0793	-	predicted transporter subunit: membrane component of ABC superfamily
731	 55.56	0	826468..828204	-	578	90111168	ybhF	b0794	-	fused predicted transporter subunits of ABC superfamily: ATP-binding components
732	 57.06	+1	828197..829195	-	332	16128763	ybhG	b0795	-	predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor
733	 54.17	0	829195..829866	-	223	162135896	ybiH	b0796	-	predicted DNA-binding transcriptional regulator
734	 56.70	+1	830095..831459	+	454	16128765	rhlE	b0797	-	RNA helicase
735	 50.31	0	831691..832173	-	160	16128766	ybiA	b0798	-	conserved protein
736	 54.07	0	832293..834443	+	716	16128767	dinG	b0799	-	ATP-dependent DNA helicase
737	 55.66	0	834471..835433	+	320	16128768	ybiB	b0800	-	predicted transferase/phosphorylase
738	 55.62	0	835574..836659	+	361	16128769	ybiC	b0801	-	predicted dehydrogenase
739	 50.57	0	836888..837148	-	86	16128770	ybiJ	b0802	-	predicted protein
740	 52.06	0	837413..837679	-	88	16128771	ybiI	b0803	-	conserved protein
741	 52.95	0	837753..838430	-	225	90111170	ybiX	b0804	-	conserved protein
742	 53.83	0	838472..840754	-	760	16128773	fiu	b0805	-	predicted iron outer membrane transporter
743	 52.49	0	841019..841279	-	86	90111171	ybiM	b0806	-	predicted protein
744	 54.15	0	841555..842481	+	308	162135897	rlmF	b0807	-	predicted SAM-dependent methyltransferase
745	 53.32	0	842478..844703	-	741	90111173	ybiO	b0808	-	predicted mechanosensitive channel
746	 53.94	0	844964..845686	-	240	16128777	glnQ	b0809	-	glutamine transporter subunit
747	 53.48	0	845683..846342	-	219	16128778	glnP	b0810	-	glutamine transporter subunit
748	 48.73	0	846481..847227	-	248	16128779	glnH	b0811	-	glutamine transporter subunit
749	 49.01	0	847631..848134	-	167	16128780	dps	b0812	-	Fe-binding and storage protein
750	 53.49	0	848433..849320	-	295	16128781	rhtA	b0813	-	threonine and homoserine efflux system
751	 51.36	0	849673..850188	+	171	16128782	ompX	b0814	-	outer membrane protein
752	 48.36	0	850237..851820	-	527	16128783	ybiP	b0815	-	predicted hydrolase, inner membrane
753	 50.74	0	851894..852163	+	89	16128784	yliL	b0816	-	predicted protein
754	 54.06	0	852406..852873	+	155	16128785	mntR	b0817	-	DNA-binding transcriptional regulator of mntH
755	 52.28	0	852870..853988	+	372	16128786	ybiR	b0818	-	predicted transporter
756	 52.99	0	854047..854967	-	306	16128787	ybiS	b0819	-	conserved protein
757	 52.79	0	855186..856778	+	530	16128788	ybiT	b0820	-	fused predicted transporter subunits of ABC superfamily: ATP-binding components
758	 55.61	0	857019..858284	-	421	16128789	ybiU	b0821	-	predicted protein
759	 46.69	0	858436..859251	-	271	16128790	ybiV	b0822	-	predicted hydrolase
760	 54.99	0	859397..861829	-	810	16128791	ybiW	b0823	-	predicted pyruvate formate lyase
761	 53.72	0	861835..862761	-	308	16128792	ybiY	b0824	-	predicted pyruvate formate lyase activating enzyme
762	 54.15	0	862865..863527	+	220	90111174	fsaA	b0825	-	fructose-6-phosphate aldolase 1
763	 55.20	0	863603..864352	-	249	16128794	moeB	b0826	-	molybdopterin synthase sulfurylase
764	 56.39	+1	864352..865587	-	411	16128795	moeA	b0827	-	molybdopterin biosynthesis protein
765	 56.52	+1	865791..866756	+	321	16128796	iaaA	b0828	-	L-asparaginase
766	 54.01	0	866743..868614	+	623	145698235	gsiA	b0829	-	fused predicted peptide transport subunits of ABC superfamily: ATP-binding components
767	 52.24	0	868634..870172	+	512	16128798	gsiB	b0830	-	predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily
768	 53.53	0	870190..871110	+	306	16128799	gsiC	b0831	-	predicted peptide transporter subunit: membrane component of ABC superfamily
769	 53.07	0	871113..872024	+	303	16128800	gsiD	b0832	-	predicted peptide transporter subunit: membrane component of ABC superfamily
770	 41.59	-2	872202..874550	+	782	16128801	yliE	b0833	-	conserved inner membrane protein
771	 43.49	-1	874558..875886	+	442	16128802	yliF	b0834	-	predicted diguanylate cyclase
772	 52.64	0	875933..877258	-	441	16128803	yliG	b0835	-	predicted SAM-dependent methyltransferase
773	 48.70	0	877471..877854	+	127	16128804	bssR	b0836	-	conserved protein
774	 51.70	0	877965..879080	+	371	16128805	yliI	b0837	-	predicted dehydrogenase
775	 51.99	0	879077..879703	-	208	90111175	yliJ	b0838	-	predicted glutathione S-transferase
776	 51.70	0	879950..881152	+	400	16128807	dacC	b0839	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
51.16	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.