IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
627	 47.87	0	709423..709869	-	148	16128659	fur	b0683	-	DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport
628	 40.23	-2	709862..709948	-	28	157783150	uof	b4637	-	ryhB-regulated fur leader peptide
629	 48.96	0	710158..710688	-	176	16128660	fldA	b0684	-	flavodoxin 1
630	 53.74	0	710828..711121	-	97	90111159	ybfE	b0685	-	lexA-regulated predicted protein
631	 50.85	0	711261..712025	-	254	16128662	ybfF	b0686	-	conserved protein
632	 49.63	0	712210..712755	+	181	16128663	seqA	b0687	-	regulatory protein for replication initiation
633	 55.27	0	712781..714421	+	546	16128664	pgm	b0688	-	phosphoglucomutase
634	 45.45	-1	714635..715129	+	164	16128665	ybfP	b0689	-	predicted protein
635	 50.61	0	716169..717488	-	439	16128668	potE	b0692	-	putrescine/proton symporter: putrescine/ornithine antiporter
636	 49.34	0	717485..719683	-	732	16128669	speF	b0693	-	ornithine decarboxylase isozyme, inducible
637	 44.19	-1	719806..720063	+	85	145698231	ybfK	b4590	-	hypothetical protein
638	 56.64	+1	720279..720956	-	225	16128670	kdpE	b0694	-	DNA-binding response regulator in two-component regulatory system with KdpD
639	 57.58	+1	720953..723637	-	894	16128671	kdpD	b0695	-	fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein
640	 53.58	0	723630..724202	-	190	16128672	kdpC	b0696	-	potassium translocating ATPase, subunit C
641	 56.22	+1	724211..726259	-	682	16128673	kdpB	b0697	-	potassium translocating ATPase, subunit B
642	 55.50	0	726282..727955	-	557	16128674	kdpA	b0698	-	potassium translocating ATPase, subunit A
643	 48.89	0	727955..728044	-	29	94541101	kdpF	b4513	-	potassium ion accessory transporter subunit
644	 50.24	0	728357..728563	+	68	16128675	ybfA	b0699	-	predicted protein
645	 59.16	+1	728806..732999	+	1397	16128676	rhsC	b0700	-	rhsC element core protein RshC
646	 31.19	-2	732999..733325	+	108	16128677	ybfB	b0702	-	predicted inner membrane protein
647	 36.67	-2	734873..735442	+	189	16128679	ybfC	b0704	-	predicted protein
648	 38.04	-2	735668..735922	+	84	145698232	ybfQ	b4514	-	predicted transposase
649	 39.63	-2	737315..738076	+	253	16128681	ybfD	b0706	-	conserved protein
650	 50.39	0	738224..738733	+	169	16128682	ybgA	b0707	-	conserved protein
651	 53.49	0	738730..740148	+	472	16128683	phr	b0708	-	deoxyribodipyrimidine photolyase, FAD-binding
652	 52.43	0	740298..741779	-	493	16128684	ybgH	b0709	-	predicted transporter
653	 53.49	0	742050..742793	+	247	16128685	ybgI	b0710	-	conserved metal-binding protein
654	 57.84	+1	742816..743472	+	218	16128686	ybgJ	b0711	-	predicted enzyme subunit
655	 55.52	0	743466..744398	+	310	16128687	ybgK	b0712	-	predicted enzyme subunit
656	 57.69	+1	744388..745122	+	244	16128688	ybgL	b0713	-	predicted lactam utilization protein
657	 52.40	0	745158..745949	+	263	16128689	nei	b0714	-	endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase
658	 56.16	+1	745946..746992	-	348	90111163	abrB	b0715	-	predicted regulator
659	 44.92	-1	747144..748205	-	353	90111164	ybgO	b0716	-	predicted fimbrial-like adhesin protein
660	 47.74	0	748202..748930	-	242	16128692	ybgP	b0717	-	predicted assembly protein
661	 49.96	0	748945..751392	-	815	90111165	ybgQ	b0718	-	predicted outer membrane protein
662	 46.74	0	751452..752018	-	188	16128694	ybgD	b0719	-	predicted fimbrial-like adhesin protein
663	 50.70	0	752408..753691	-	427	16128695	gltA	b0720	-	citrate synthase
664	 49.23	0	754400..754789	+	129	16128696	sdhC	b0721	-	succinate dehydrogenase, membrane subunit, binds cytochrome b556
665	 51.15	0	754783..755130	+	115	16128697	sdhD	b0722	-	succinate dehydrogenase, membrane subunit, binds cytochrome b556
666	 56.31	+1	755130..756896	+	588	16128698	sdhA	b0723	-	succinate dehydrogenase, flavoprotein subunit
667	 51.60	0	756912..757628	+	238	16128699	sdhB	b0724	-	succinate dehydrogenase, FeS subunit
668	 55.67	0	757929..760730	+	933	16128701	sucA	b0726	-	2-oxoglutarate decarboxylase, thiamin-requiring
669	 55.91	+1	760745..761962	+	405	16128702	sucB	b0727	-	dihydrolipoyltranssuccinase
670	 54.33	0	762237..763403	+	388	16128703	sucC	b0728	-	succinyl-CoA synthetase, beta subunit
671	 53.79	0	763403..764272	+	289	16128704	sucD	b0729	-	succinyl-CoA synthetase, NAD(P)-binding, alpha subunit
672	 48.13	0	764376..765098	-	240	16128705	mngR	b0730	-	DNA-binding transcriptional dual regulator, fatty-acyl-binding
673	 54.58	0	765207..767183	+	658	16128706	mngA	b0731	-	fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component
674	 49.35	0	767201..769834	+	877	16128707	mngB	b0732	-	alpha-mannosidase
675	 52.90	0	770681..772249	+	522	90111166	cydA	b0733	-	cytochrome d terminal oxidase, subunit I
676	 53.86	0	772265..773404	+	379	16128709	cydB	b0734	-	cytochrome d terminal oxidase, subunit II
677	 51.75	0	773419..773532	+	37	94541102	ybgT	b4515	-	conserved protein
678	 49.66	0	773532..773825	+	97	16128710	ybgE	b0735	-	conserved inner membrane protein
679	 49.63	0	773975..774379	+	134	16128711	ybgC	b0736	-	predicted acyl-CoA thioesterase
680	 50.51	0	774376..775068	+	230	16128712	tolQ	b0737	-	membrane spanning protein in TolA-TolQ-TolR complex
681	 51.75	0	775072..775500	+	142	16128713	tolR	b0738	-	membrane spanning protein in TolA-TolQ-TolR complex
682	 52.29	0	775565..776830	+	421	16128714	tolA	b0739	-	membrane anchored protein in TolA-TolQ-TolR complex
683	 53.13	0	776963..778255	+	430	16128715	tolB	b0740	-	periplasmic protein
684	 51.34	0	778290..778811	+	173	16128716	pal	b0741	-	peptidoglycan-associated outer membrane lipoprotein
685	 49.49	0	778821..779612	+	263	16128717	ybgF	b0742	-	predicted protein
686	 50.19	0	781308..782351	+	347	16128718	nadA	b0750	-	quinolinate synthase, subunit A
687	 48.19	0	782389..783108	+	239	16128719	pnuC	b0751	-	predicted nicotinamide mononucleotide transporter
688	 53.08	0	783105..784046	-	313	16128720	zitB	b0752	-	zinc efflux system
689	 50.39	0	784160..784540	-	126	16128721	ybgS	b0753	-	conserved protein
690	 52.14	0	784856..785908	+	350	16128722	aroG	b0754	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible
691	 51.00	0	786066..786818	-	250	16128723	gpmA	b0755	-	phosphoglyceromutase 1
692	 55.62	0	787020..788060	-	346	16128724	galM	b0756	-	galactose-1-epimerase (mutarotase)
693	 52.92	0	788054..789202	-	382	16128725	galK	b0757	-	galactokinase
694	 55.78	0	789206..790252	-	348	16128726	galT	b0758	-	galactose-1-phosphate uridylyltransferase
695	 54.38	0	790262..791278	-	338	49176045	galE	b0759	-	UDP-galactose-4-epimerase
696	 52.68	0	791539..793011	-	490	16128728	modF	b0760	-	fused molybdate transporter subunits of ABC superfamily: ATP-binding components
697	 52.60	0	793079..793867	-	262	16128729	modE	b0761	-	DNA-binding transcriptional dual regulator
698	 41.33	-2	793996..794145	+	49	16128730	ybhT	b0762	-	predicted protein
699	 50.90	0	794312..795085	+	257	16128731	modA	b0763	-	molybdate transporter subunit
700	 54.06	0	795085..795774	+	229	16128732	modB	b0764	-	molybdate transporter subunit
701	 53.54	0	795777..796835	+	352	16128733	modC	b0765	-	molybdate transporter subunit
702	 51.53	0	796836..797654	-	272	16128734	ybhA	b0766	-	predicted hydrolase
703	 55.12	0	797809..798804	+	331	16128735	pgl	b0767	-	6-phosphogluconolactonase
704	 44.76	-1	798845..799798	-	317	145698233	ybhD	b0768	-	predicted DNA-binding transcriptional regulator
705	 48.81	0	799982..801034	+	350	16128737	ybhH	b0769	-	conserved protein
706	 49.79	0	801110..802543	+	477	16128738	ybhI	b0770	-	predicted transporter
707	 51.46	0	802726..804987	+	753	90111167	ybhJ	b0771	-	predicted hydratase
708	 53.35	0	805221..806504	-	427	16128740	ybhC	b0772	-	predicted pectinesterase
709	 52.41	0	806656..807132	-	158	16128741	ybhB	b0773	-	predicted kinase inhibitor
710	 56.28	+1	807191..808480	-	429	16128742	bioA	b0774	-	7,8-diaminopelargonic acid synthase, PLP-dependent
711	 55.52	0	808567..809607	+	346	16128743	bioB	b0775	-	biotin synthase
712	 58.01	+1	809604..810758	+	384	16128744	bioF	b0776	-	8-amino-7-oxononanoate synthase
713	 56.48	+1	810745..811500	+	251	16128745	bioC	b0777	-	predicted methltransferase, enzyme of biotin synthesis
714	 53.69	0	811493..812170	+	225	16128746	bioD	b0778	-	dethiobiotin synthetase
715	 39.13	-2	812337..812474	-	45	145698234	ybhU	b4591	-	hypothetical protein
716	 53.56	0	812749..814770	+	673	16128747	uvrB	b0779	-	excinulease of nucleotide excision repair, DNA damage recognition component
717	 51.38	0	814962..815870	-	302	16128748	ybhK	b0780	-	predicted transferase with NAD(P)-binding Rossmann-fold domain
718	 54.14	0	816267..817256	+	329	16128749	moaA	b0781	-	molybdopterin biosynthesis protein A
719	 52.05	0	817278..817790	+	170	16128750	moaB	b0782	-	molybdopterin biosynthesis protein B
720	 55.97	+1	817793..818278	+	161	16128751	moaC	b0783	-	molybdopterin biosynthesis, protein C
721	 55.69	0	818271..818516	+	81	16128752	moaD	b0784	-	molybdopterin synthase, small subunit
722	 56.73	+1	818518..818970	+	150	16128753	moaE	b0785	-	molybdopterin synthase, large subunit
723	 48.65	0	819107..819811	+	234	16128754	ybhL	b0786	-	predicted inner membrane protein
724	 42.30	-1	820016..820729	+	237	16128755	ybhM	b0787	-	conserved inner membrane protein
725	 52.35	0	820765..821721	-	318	16128756	ybhN	b0788	-	conserved inner membrane protein
726	 54.43	0	821721..822962	-	413	16128757	ybhO	b0789	-	cardiolipin synthase 2
51.16	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.