IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
474	 55.58	0	541112..542257	+	381	16128498	glxK	b0514	-	glycerate kinase II
475	 46.18	-1	542485..543270	-	261	16128499	ylbA	b0515	-	conserved protein
476	 51.38	0	543281..544516	-	411	16128500	allC	b0516	-	allantoate amidohydrolase
477	 52.38	0	544538..545587	-	349	16128501	allD	b0517	-	ureidoglycolate dehydrogenase
478	 55.58	0	545904..547571	+	555	16128502	fdrA	b0518	-	predicted acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain
479	 56.86	+1	548850..549665	+	271	16128504	ylbF	b0520	-	conserved protein
480	 56.94	+1	549662..550555	+	297	16128505	ybcF	b0521	-	predicted carbamate kinase
481	 56.46	+1	550750..551817	-	355	16128506	purK	b0522	-	N5-carboxyaminoimidazole ribonucleotide synthase
482	 59.02	+1	551814..552323	-	169	16128507	purE	b0523	-	N5-carboxyaminoimidazole ribonucleotide mutase
483	 54.50	0	552441..553163	-	240	16128508	lpxH	b0524	-	UDP-2,3-diacylglucosamine pyrophosphatase
484	 47.88	0	553166..553660	-	164	16128509	ppiB	b0525	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
485	 54.47	0	553834..555219	+	461	16128510	cysS	b0526	-	cysteinyl-tRNA synthetase
486	 53.07	0	555255..555776	-	173	16128511	ybcI	b0527	-	conserved inner membrane protein
487	 54.93	0	555884..556096	-	70	90111146	ybcJ	b0528	-	predicted RNA-binding protein
488	 54.33	0	556098..556964	-	288	16128513	folD	b0529	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
489	 44.57	-1	557435..557977	+	180	90111147	sfmA	b0530	-	predicted fimbrial-like adhesin protein
490	 42.57	-1	558197..558889	+	230	16128515	sfmC	b0531	-	pilin chaperone, periplasmic
491	 47.81	0	558920..561523	+	867	16128516	sfmD	b0532	-	predicted outer membrane export usher protein
492	 45.53	-1	561559..562542	+	327	145698227	sfmH	b0533	-	predicted fimbrial-like adhesin protein
493	 50.00	0	562553..563068	+	171	16128518	sfmF	b0534	-	predicted fimbrial-like adhesin protein
494	 36.65	-2	563071..563703	-	210	16128519	fimZ	b0535	-	predicted DNA-binding transcriptional regulator
495	 46.91	0	564038..565201	-	387	16128520	intD	b0537	-	DLP12 prophage; predicted integrase
496	 50.16	0	566056..566364	+	102	16128523	insE	b0540	-	IS3 element protein InsE
497	 55.13	0	566361..567227	+	288	16128524	insF	b0541	-	IS3 element protein InsF
498	 41.14	-2	567538..567870	+	110	16128526	emrE	b0543	-	DLP12 prophage; multidrug resistance protein
499	 35.56	-2	568125..569651	+	508	16128527	ybcK	b0544	-	DLP12 prophage; predicted recombinase
500	 42.39	-1	570116..570667	+	183	16128528	ybcL	b0545	-	DLP12 prophage; predicted kinase inhibitor
501	 36.22	-2	570677..571474	+	265	16128529	ybcM	b0546	-	DLP12 prophage; predicted DNA-binding transcriptional regulator
502	 49.02	0	571591..571692	+	33	145698228	ylcH	b4588	-	hypothetical protein, DLP12 prophage
503	 50.44	0	571689..572144	+	151	16128530	ybcN	b0547	-	DLP12 prophage; predicted protein
504	 48.54	0	572144..572314	+	56	16128531	ninE	b0548	-	DLP12 prophage; conserved protein
505	 53.26	0	572307..572597	+	96	16128532	ybcO	b0549	-	DLP12 prophage; predicted protein
506	 53.17	0	572594..572956	+	120	16128533	rusA	b0550	-	DLP12 prophage; endonuclease RUS
507	 47.52	0	572953..573093	+	46	94541097	ylcG	b4509	-	DLP12 prophage; predicted protein
508	 42.97	-1	573179..573562	+	127	16128534	quuD	b0551	-	DLP12 prophage; predicted antitermination protein
509	 54.67	0	573960..574976	-	338	16128535	insH	b0552	-	IS5 transposase and trans-activator
510	 47.69	0	576621..576836	+	71	16128537	essD	b0554	-	DLP12 prophage; predicted phage lysis protein
511	 47.59	0	576836..577333	+	165	16128538	arrD	b0555	-	DLP12 prophage; predicted lysozyme
512	 51.30	0	577330..577791	+	153	16128539	rzpD	b0556	-	DLP12 prophage; predicted murein endopeptidase
513	 56.83	+1	577550..577732	+	60	94541098	rzoD	b4510	-	DLP12 prophage; predicted lipoprotein
514	 41.50	-2	577823..578116	-	97	16128540	borD	b0557	-	DLP12 prophage; predicted lipoprotein
515	 31.63	-2	578407..578817	-	136	90111149	ybcV	b0558	-	DLP12 prophage; predicted protein
516	 39.61	-2	579103..579309	+	68	16128542	ybcW	b0559	-	DLP12 prophage; predicted protein
517	 43.59	-1	579474..579668	-	64	145698229	ylcI	b4589	-	hypothetical protein
518	 52.56	0	580057..580602	+	181	16128543	nohB	b0560	-	DLP12 prophage; DNA packaging protein
519	 31.73	-2	582904..583653	+	249	16128547	appY	b0564	-	DLP12 prophage; DNA-binding transcriptional activator
520	 43.40	-1	583903..584856	-	317	16128548	ompT	b0565	-	DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)
521	 46.33	-1	585370..586131	-	253	16128549	envY	b0566	-	DNA-binding transcriptional activator of porin biosynthesis
522	 52.30	0	586314..587204	-	296	16128550	ybcH	b0567	-	predicted protein
523	 55.06	0	587205..590177	-	990	16128551	nfrA	b0568	-	bacteriophage N4 receptor, outer membrane subunit
524	 52.50	0	590164..592401	-	745	16128552	nfrB	b0569	-	bacteriophage N4 receptor, inner membrane subunit
525	 52.04	0	592551..593993	-	480	16128553	cusS	b0570	-	sensory histidine kinase in two-component regulatory system with CusR, senses copper ions
526	 53.80	0	593983..594666	-	227	16128554	cusR	b0571	-	DNA-binding response regulator in two-component regulatory system with CusS
527	 51.24	0	594823..596196	+	457	16128555	cusC	b0572	-	copper/silver efflux system, outer membrane component
528	 45.35	-1	596354..596686	+	110	16128556	cusF	b0573	-	periplasmic copper-binding protein
529	 55.72	0	596702..597925	+	407	16128557	cusB	b0574	-	copper/silver efflux system, membrane fusion protein
530	 55.69	0	597937..601080	+	1047	16128558	cusA	b0575	-	copper/silver efflux system, membrane component
531	 52.51	0	601182..602558	+	458	16128559	pheP	b0576	-	phenylalanine transporter
532	 47.52	0	602639..603886	-	415	16128560	ybdG	b0577	-	predicted mechanosensitive channel
533	 51.53	0	603994..604647	-	217	16128561	nfsB	b0578	-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive
534	 47.15	0	604741..605109	-	122	16128562	ybdF	b0579	-	conserved protein
535	 50.60	0	605174..605422	-	82	16128563	ybdJ	b0580	-	predicted inner membrane protein
536	 51.92	0	605488..606606	-	372	16128564	ybdK	b0581	-	gamma-glutamyl:cysteine ligase
537	 47.71	0	607059..607211	+	50	49176035	hokE	b4415	-	toxic polypeptide, small
538	 51.93	0	607288..608400	+	370	16128565	insL	b0582	-	IS186/IS421 transposase
539	 47.46	0	608682..609311	-	209	16128566	entD	b0583	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
540	 54.08	0	609477..611717	-	746	16128567	fepA	b0584	-	iron-enterobactin outer membrane transporter
541	 55.02	0	612038..613162	+	374	16128568	fes	b0585	-	enterobactin/ferric enterobactin esterase
542	 55.71	0	613165..613383	+	72	94541099	ybdZ	b4511	-	conserved protein
543	 56.54	+1	613380..617261	+	1293	16128569	entF	b0586	-	enterobactin synthase multienzyme complex component,  ATP-dependent
544	 44.97	-1	617477..618610	+	377	16128570	fepE	b0587	-	regulator of length of O-antigen component of lipopolysaccharide chains
545	 53.92	0	618607..619422	-	271	16128571	fepC	b0588	-	iron-enterobactin transporter subunit
546	 58.21	+1	619419..620411	-	330	16128572	fepG	b0589	-	iron-enterobactin transporter subunit
547	 61.00	+2	620408..621412	-	334	16128573	fepD	b0590	-	iron-enterobactin transporter subunit
548	 58.03	+1	621523..622773	+	416	16128574	entS	b0591	-	predicted transporter
549	 55.07	0	622777..623733	-	318	16128575	fepB	b0592	-	iron-enterobactin transporter subunit
550	 56.46	+1	624108..625283	+	391	16128576	entC	b0593	-	isochorismate synthase 1
551	 56.05	+1	625293..626903	+	536	16128577	entE	b0594	-	2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex
552	 55.36	0	626917..627774	+	285	16128578	entB	b0595	-	isochorismatase
553	 57.97	+1	627774..628520	+	248	16128579	entA	b0596	-	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
554	 56.76	+1	628523..628936	+	137	16128580	ybdB	b0597	-	conserved protein
555	 57.22	+1	629117..631222	+	701	16128581	cstA	b0598	-	carbon starvation protein
556	 52.02	0	631405..631602	+	65	94541100	ybdD	b4512	-	conserved protein
557	 55.19	0	631612..632700	-	362	16128582	ybdH	b0599	-	predicted oxidoreductase
558	 53.83	0	632809..633969	+	386	16128583	ybdL	b0600	-	methionine aminotransferase, PLP-dependent
559	 46.83	0	633970..634599	-	209	16128584	ybdM	b0601	-	conserved protein
560	 47.58	0	634572..635792	-	406	16128585	ybdN	b0602	-	conserved protein
561	 38.65	-2	635939..636841	-	300	16128586	ybdO	b0603	-	predicted DNA-binding transcriptional regulator
562	 46.85	0	637050..637796	-	248	90111151	dsbG	b0604	-	periplasmic disulfide isomerase/thiol-disulphide oxidase
563	 50.00	0	638168..638731	+	187	16128588	ahpC	b0605	-	alkyl hydroperoxide reductase, C22 subunit
564	 53.13	0	638976..640541	+	521