version 1.0
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675 4132 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3802 53.81 0 4262337..4263752 + 471 16131878 dnaB b4052 - replicative DNA helicase 3803 55.93 +1 4263805..4264884 + 359 16131879 alr b4053 - alanine racemase 1, PLP-binding, biosynthetic 3804 52.76 0 4265137..4266330 + 397 16131880 tyrB b4054 - tyrosine aminotransferase, tyrosine-repressible, PLP-dependent 3805 28.43 -2 4266832..4267035 - 67 145698341 yjbS b4621 - hypothetical protein 3806 49.44 0 4267437..4268150 + 237 16131881 aphA b4055 - acid phosphatase/phosphotransferase, class B, non-specific 3807 51.80 0 4268261..4268677 + 138 16131882 yjbQ b4056 - conserved protein 3808 50.42 0 4268681..4269037 + 118 16131883 yjbR b4057 - conserved protein 3809 56.08 +1 4269072..4271894 - 940 16131884 uvrA b4058 - ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 3810 58.10 +1 4272148..4272684 + 178 16131885 ssb b4059 - single-stranded DNA-binding protein 3811 52.48 0 4272783..4273064 - 93 90111681 yjcB b4060 - predicted inner membrane protein 3812 44.74 -1 4273494..4275080 + 528 16131887 yjcC b4061 - predicted signal transduction protein (EAL domain containing protein) 3813 50.93 0 4275083..4275406 - 107 16131888 soxS b4062 - DNA-binding transcriptional dual regulator 3814 52.04 0 4275492..4275956 + 154 16131889 soxR b4063 - DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing 3815 55.93 +1 4276502..4277851 + 449 16131890 yjcD b4064 - predicted permease 3816 55.82 0 4278003..4279652 + 549 16131891 yjcE b4065 - predicted cation/proton antiporter 3817 32.95 -2 4279806..4281098 - 430 16131892 yjcF b4066 - conserved protein 3818 55.76 0 4281276..4282925 - 549 16131893 actP b4067 - acetate transporter 3819 49.21 0 4282922..4283236 - 104 16131894 yjcH b4068 - conserved inner membrane protein involved in acetate transport 3820 56.87 +1 4283436..4285394 - 652 16131895 acs b4069 - acetyl-CoA synthetase 3821 52.26 0 4285787..4287223 + 478 16131896 nrfA b4070 - nitrite reductase, formate-dependent, cytochrome 3822 53.97 0 4287268..4287834 + 188 90111682 nrfB b4071 - nitrite reductase, formate-dependent, penta-heme cytochrome c 3823 57.89 +1 4287831..4288502 + 223 16131898 nrfC b4072 - formate-dependent nitrite reductase, 4Fe4S subunit 3824 57.58 +1 4288499..4289455 + 318 16131899 nrfD b4073 - formate-dependent nitrite reductase, membrane subunit 3825 57.32 +1 4289535..4291193 + 552 16131900 nrfE b4074 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE 3826 52.34 0 4291186..4291569 + 127 16131901 nrfF b4075 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF 3827 51.76 0 4291566..4292162 + 198 16131902 nrfG b4076 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG 3828 53.27 0 4292504..4293817 + 437 16131903 gltP b4077 - glutamate/aspartate:proton symporter 3829 49.71 0 4294459..4295148 - 229 16131904 yjcO b4078 - conserved protein 3830 54.38 0 4295242..4297389 - 715 16131905 fdhF b4079 - formate dehydrogenase-H, selenopolypeptide subunit 3831 55.76 0 4297587..4299053 - 488 16131906 mdtP b4080 - predicted outer membrane factor of efflux pump 3832 54.53 0 4299050..4301101 - 683 90111683 mdtO b4081 - predicted multidrug efflux system component 3833 55.91 +1 4301101..4302132 - 343 16131908 mdtN b4082 - predicted membrane fusion protein of efflux pump 3834 47.46 0 4302151..4302426 - 91 145698342 ytcA b4622 - hypothetical protein 3835 52.92 0 4302635..4304620 - 661 90111684 yjcS b4083 - predicted alkyl sulfatase 3836 54.95 0 4304893..4305822 - 309 16131910 alsK b4084 - D-allose kinase 3837 49.14 0 4305806..4306501 - 231 16131911 alsE b4085 - allulose-6-phosphate 3-epimerase 3838 52.50 0 4306512..4307492 - 326 16131912 alsC b4086 - D-allose transporter subunit 3839 47.95 0 4307471..4309003 - 510 16131913 alsA b4087 - fused D-allose transporter subunits of ABC superfamily: ATP-binding components 3840 48.50 0 4309130..4310065 - 311 16131914 alsB b4088 - D-allose transporter subunit 3841 47.47 0 4310124..4311014 - 296 90111685 rpiR b4089 - DNA-binding transcriptional repressor 3842 50.22 0 4311373..4311822 + 149 16131916 rpiB b4090 - ribose 5-phosphate isomerase B/allose 6-phosphate isomerase 3843 56.06 +1 4311891..4312220 + 109 49176458 yjdP b4487 - conserved protein 3844 59.29 +1 4312367..4313125 - 252 16131918 phnP b4092 - carbon-phosphorus lyase complex accessory protein 3845 57.93 +1 4313127..4313561 - 144 16131919 phnO b4093 - predicted acyltransferase with acyl-CoA N-acyltransferase domain 3846 60.22 +1 4313548..4314105 - 185 16131920 phnN b4094 - ribose 1,5-bisphosphokinase 3847 61.30 +2 4314105..4315241 - 378 16131921 phnM b4095 - carbon-phosphorus lyase complex subunit 3848 60.21 +1 4315238..4315918 - 226 16131922 phnL b4096 - carbon-phosphorus lyase complex subunit 3849 61.40 +2 4316029..4316787 - 252 49176459 phnK b4097 - carbon-phosphorus lyase complex subunit 3850 58.27 +1 4316784..4317629 - 281 16131924 phnJ b4098 - carbon-phosphorus lyase complex subunit 3851 62.63 +2 4317622..4318686 - 354 16131925 phnI b4099 - carbon-phosphorus lyase complex subunit 3852 60.85 +2 4318686..4319270 - 194 16131926 phnH b4100 - carbon-phosphorus lyase complex subunit 3853 62.69 +2 4319267..4319719 - 150 16131927 phnG b4101 - carbon-phosphorus lyase complex subunit 3854 61.85 +2 4319720..4320445 - 241 16131928 phnF b4102 - predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation 3855 55.46 0 4321359..4322375 - 338 16131931 phnD b4105 - phosphonate/organophosphate ester transporter subunit 3856 58.56 +1 4322400..4323188 - 262 16131932 phnC b4106 - phosphonate/organophosphate ester transporter subunit 3857 51.58 0 4323321..4323764 - 147 16131933 yjdN b4107 - conserved protein 3858 46.43 0 4324422..4324757 - 111 16131934 yjdM b4108 - conserved protein 3859 51.46 0 4325158..4327386 + 742 16131935 yjdA b4109 - conserved protein with nucleoside triphosphate hydrolase domain 3860 56.88 +1 4327383..4328261 + 292 90111687 yjcZ b4110 - conserved protein 3861 50.43 0 4328525..4330027 + 500 16131937 proP b4111 - proline/glycine betaine transporter 3862 54.21 0 4330204..4331295 - 363 16131938 basS b4112 - sensory histidine kinase in two-component regulatory system with BasR 3863 53.21 0 4331305..4331973 - 222 16131939 basR b4113 - DNA-binding response regulator in two-component regulatory system with BasS 3864 49.45 0 4331970..4333613 - 547 90111688 eptA b4114 - predicted metal dependent hydrolase 3865 53.74 0 4333717..4335054 - 445 16131941 adiC b4115 - arginine:agmatin 3866 41.34 -2 4335191..4335952 - 253 16131942 adiY b4116 - DNA-binding transcriptional activator 3867 52.66 0 4336277..4338547 - 756 16131943 adiA b4117 - biodegradative arginine decarboxylase 3868 50.28 0 4338743..4339651 - 302 16131944 melR b4118 - DNA-binding transcriptional dual regulator 3869 52.43 0 4339934..4341289 + 451 16131945 melA b4119 - alpha-galactosidase, NAD(P)-binding 3870 45.96 -1 4341404..4342813 + 469 16131946 melB b4120 - melibiose:sodium symporter 3871 54.92 0 4342952..4343581 - 209 16131947 yjdF b4121 - conserved inner membrane protein 3872 54.64 0 4343703..4345349 - 548 16131948 fumB b4122 - anaerobic class I fumarate hydratase (fumarase B) 3873 52.27 0 4345427..4346767 - 446 16131949 dcuB b4123 - C4-dicarboxylate antiporter 3874 49.31 0 4347338..4348057 - 239 16131950 dcuR b4124 - DNA-binding response regulator in two-component regulatory system with DcuS 3875 49.94 0 4348054..4349685 - 543 16131951 dcuS b4125 - sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration 3876 48.92 0 4349866..4350096 + 76 16131952 yjdI b4126 - conserved protein 3877 41.03 -2 4350108..4350380 + 90 16131953 yjdJ b4127 - predicted acyltransferase with acyl-CoA N-acyltransferase domain 3878 35.02 -2 4350607..4350903 + 98 16131954 yjdK b4128 - predicted protein 3879 35.06 -2 4350931..4351104 + 57 94541131 yjdO b4559 - predicted protein 3880 47.43 0 4351223..4352740 - 505 16131955 lysU b4129 - lysine tRNA synthetase, inducible 3881 51.10 0 4352977..4354434 - 485 16131956 yjdL b4130 - predicted transporter 3882 47.58 0 4354493..4356640 - 715 16131957 cadA b4131 - lysine decarboxylase 1 3883 49.44 0 4356720..4358054 - 444 16131958 cadB b4132 - predicted lysine/cadaverine transporter 3884 41.98 -1 4358419..4359957 - 512 16131959 cadC b4133 - DNA-binding transcriptional activator 3885 53.12 0 4360756..4361331 - 191 90111689 yjdC b4135 - predicted transcriptional regulator 3886 54.42 0 4361368..4363065 - 565 16131961 dipZ b4136 - fused thiol:disulfide interchange protein: activator of DsbC/conserved protein 3887 50.15 0 4363041..4363379 - 112 16131962 cutA b4137 - copper binding protein, copper sensitivity 3888 52.61 0 4363495..4364796 - 433 16131963 dcuA b4138 - C4-dicarboxylate antiporter 3889 49.20 0 4364914..4366350 - 478 90111690 aspA b4139 - aspartate ammonia-lyase 3890 47.38 0 4366687..4367163 + 158 90111691 fxsA b4140 - inner membrane protein 3891 52.27 0 4367179..4368435 - 418 16131966 yjeH b4141 - predicted transporter 3892 48.64 0 4368711..4369004 + 97 16131967 groS b4142 - Cpn10 chaperonin GroES, small subunit of GroESL 3893 52.88 0 4369048..4370694 + 548 16131968 groL b4143 - Cpn60 chaperonin GroEL, large subunit of GroESL 3894 55.37 0 4370832..4371185 + 117 90111692 yjeI b4144 - conserved protein 3895 45.17 -1 4371388..4372257 - 289 16131970 yjeJ b4145 - predicted protein 3896 52.67 0 4372652..4373680 - 342 16131971 yjeK b4146 - predicted lysine aminomutase 3897 49.38 0 4373722..4374288 + 188 16131972 efp b4147 - Elongation factor EF-P 3898 53.97 0 4374340..4374465 + 41 49176462 ecnA b4410 - entericidin A membrane lipoprotein, antidote entericidin B 3899 48.30 0 4374576..4374722 + 48 49176463 ecnB b4411 - entericidin B membrane lipoprotein 3900 53.14 0 4374898..4375215 + 105 90111693 sugE b4148 - multidrug efflux system protein 3901 53.37 0 4375212..4375745 - 177 16131974 blc b4149 - outer membrane lipoprotein (lipocalin) 51.16 MEAN 4.75 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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