IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3736	 52.21	0	4176470..4176898	+	142	16131813	rplK	b3983	-	50S ribosomal subunit protein L11
3737	 51.63	0	4176902..4177606	+	234	16131814	rplA	b3984	-	50S ribosomal subunit protein L1
3738	 52.41	0	4178019..4178516	+	165	16131815	rplJ	b3985	-	50S ribosomal subunit protein L10
3739	 46.17	-1	4178583..4178948	+	121	16131816	rplL	b3986	-	50S ribosomal subunit protein L7/L12
3740	 52.62	0	4179268..4183296	+	1342	16131817	rpoB	b3987	-	RNA polymerase, beta subunit
3741	 53.84	0	4183373..4187596	+	1407	16131818	rpoC	b3988	-	RNA polymerase, beta prime subunit
3742	 42.41	-1	4187809..4188348	+	179	16131819	yjaZ	b3989	-	heat shock protein
3743	 55.03	0	4188758..4189891	-	377	16131820	thiH	b3990	-	thiamin biosynthesis ThiGH complex subunit
3744	 58.50	+1	4189888..4190658	-	256	33347812	thiG	b3991	-	thiamin biosynthesis ThiGH complex subunit
3745	 55.72	0	4190660..4190860	-	66	49176448	thiS	b4407	-	sulphur carrier protein
3746	 57.54	+1	4190844..4191599	-	251	90111672	thiF	b3992	-	thiamin (thiazole moiety) biosynthesis protein
3747	 58.02	+1	4191592..4192227	-	211	16131823	thiE	b3993	-	thiamin phosphate synthase (thiamin phosphate pyrophosphorylase)
3748	 55.75	0	4192227..4194122	-	631	16131824	thiC	b3994	-	thiamin (pyrimidine moiety) biosynthesis protein
3749	 49.06	0	4194355..4194831	-	158	16131825	rsd	b3995	-	stationary phase protein, binds sigma 70 RNA polymerase subunit
3750	 53.23	0	4194926..4195699	+	257	49176450	nudC	b3996	-	NADH pyrophosphatase
3751	 56.06	+1	4195739..4196803	+	354	16131827	hemE	b3997	-	uroporphyrinogen decarboxylase
3752	 58.78	+1	4196813..4197484	+	223	90111673	nfi	b3998	-	endonuclease V
3753	 48.56	0	4197527..4198117	+	196	16131829	yjaG	b3999	-	conserved protein
3754	 48.35	0	4198304..4198576	+	90	16131830	hupA	b4000	-	HU, DNA-binding transcriptional regulator, alpha subunit
3755	 53.45	0	4198589..4199284	+	231	16131831	yjaH	b4001	-	conserved protein
3756	 53.52	0	4199286..4199711	-	141	90111674	zraP	b4002	-	Zn-binding periplasmic protein
3757	 54.29	0	4199949..4201346	+	465	16131833	zraS	b4003	-	sensory histidine kinase in two-component regulatory system with ZraR
3758	 56.26	+1	4201343..4202668	+	441	16131834	zraR	b4004	-	fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein
3759	 58.22	+1	4202665..4203954	-	429	16131835	purD	b4005	-	phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase
3760	 56.29	+1	4203966..4205555	-	529	16131836	purH	b4006	-	fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase
3761	 45.31	-1	4211257..4211640	+	127	16131837	yjaA	b4011	-	conserved protein
3762	 54.50	0	4211703..4212146	-	147	16131838	yjaB	b4012	-	predicted acetyltransferase
3763	 50.00	0	4212303..4213232	+	309	16131839	metA	b4013	-	homoserine O-transsuccinylase
3764	 51.75	0	4213501..4215102	+	533	16131840	aceB	b4014	-	malate synthase A
3765	 55.33	0	4215132..4216436	+	434	16131841	aceA	b4015	-	isocitrate lyase
3766	 52.79	0	4216619..4218355	+	578	16131842	aceK	b4016	-	isocitrate dehydrogenase kinase/phosphatase
3767	 37.63	-2	4218324..4220510	-	728	16131843	arpA	b4017	-	ankyrin repeat protein, function unknown
3768	 54.18	0	4220827..4221651	-	274	90111675	iclR	b4018	-	DNA-binding transcriptional repressor
3769	 55.84	0	4221851..4225534	+	1227	16131845	metH	b4019	-	homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent
3770	 55.33	0	4225754..4227385	+	543	16131846	yjbB	b4020	-	predicted transporter
3771	 54.35	0	4227476..4228165	-	229	16131847	pepE	b4021	-	(alpha)-aspartyl dipeptidase
3772	 51.55	0	4228377..4229249	+	290	16131848	rluF	b4022	-	23S rRNA pseudouridine synthase
3773	 49.45	0	4229382..4229654	-	90	16131849	pagB	b4023	-	conserved protein
3774	 53.85	0	4229907..4231256	-	449	16131850	lysC	b4024	-	aspartokinase III
3775	 51.33	0	4231781..4233430	+	549	16131851	pgi	b4025	-	glucosephosphate isomerase
3776	 60.49	+1	4233929..4234171	+	80	16131852	yjbE	b4026	-	predicted protein
3777	 54.77	0	4234285..4234923	+	212	90111676	yjbF	b4027	-	predicted lipoprotein
3778	 58.67	+1	4234920..4235657	+	245	16131854	yjbG	b4028	-	conserved protein
3779	 54.03	0	4235657..4237753	+	698	16131855	yjbH	b4029	-	predicted porin
3780	 49.10	0	4237800..4238078	-	92	145698339	yjbT	b4620	-	hypothetical protein, no homologs
3781	 49.15	0	4238348..4238758	+	136	16131856	psiE	b4030	-	predicted phosphate starvation inducible protein
3782	 49.59	0	4238802..4240277	-	491	16131857	xylE	b4031	-	D-xylose transporter
3783	 54.55	0	4240649..4241539	-	296	16131858	malG	b4032	-	maltose transporter subunit
3784	 53.27	0	4241554..4243098	-	514	16131859	malF	b4033	-	maltose transporter subunit
3785	 51.05	0	4243252..4244442	-	396	16131860	malE	b4034	-	maltose transporter subunit
3786	 54.84	0	4244807..4245922	+	371	16131861	malK	b4035	-	fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein
3787	 51.68	0	4245994..4247334	+	446	16131862	lamB	b4036	-	maltose outer membrane porin (maltoporin)
3788	 53.42	0	4247577..4248497	+	306	16131863	malM	b4037	-	maltose regulon periplasmic protein
3789	 52.81	0	4250529..4251026	+	165	90111677	ubiC	b4039	-	chorismate pyruvate lyase
3790	 51.78	0	4251039..4251911	+	290	16131866	ubiA	b4040	-	p-hydroxybenzoate octaprenyltransferase
3791	 55.16	0	4252066..4254489	-	807	90111678	plsB	b4041	-	glycerol-3-phosphate O-acyltransferase
3792	 51.76	0	4254660..4255028	+	122	16131868	dgkA	b4042	-	diacylglycerol kinase
3793	 51.89	0	4255138..4255746	+	202	16131869	lexA	b4043	-	DNA-binding transcriptional repressor of SOS regulon
3794	 55.72	0	4255765..4257144	+	459	162135919	dinF	b4044	-	DNA-damage-inducible SOS response protein
3795	 42.38	-1	4257260..4257469	+	69	16131871	yjbJ	b4045	-	predicted stress response protein
3796	 52.13	0	4257511..4258026	-	171	90111679	zur	b4046	-	DNA-binding transcriptional repressor, Zn(II)-binding
3797	 28.63	-2	4258344..4258598	+	84	16131873	yjbL	b4047	-	predicted protein
3798	 36.58	-2	4258622..4259329	+	235	16131874	yjbM	b4048	-	predicted protein
3799	 54.28	0	4259737..4260729	+	330	145698340	dusA	b4049	-	tRNA-dihydrouridine synthase A
3800	 49.79	0	4260863..4261105	+	80	90111680	pspG	b4050	-	phage shock protein G
3801	 53.05	0	4261271..4262254	-	327	16131877	qor	b4051	-	quinone oxidoreductase, NADPH-dependent
3802	 53.81	0	4262337..4263752	+	471	16131878	dnaB	b4052	-	replicative DNA helicase
3803	 55.93	+1	4263805..4264884	+	359	16131879	alr	b4053	-	alanine racemase 1, PLP-binding, biosynthetic
3804	 52.76	0	4265137..4266330	+	397	16131880	tyrB	b4054	-	tyrosine aminotransferase, tyrosine-repressible, PLP-dependent
3805	 28.43	-2	4266832..4267035	-	67	145698341	yjbS	b4621	-	hypothetical protein
3806	 49.44	0	4267437..4268150	+	237	16131881	aphA	b4055	-	acid phosphatase/phosphotransferase, class B, non-specific
3807	 51.80	0	4268261..4268677	+	138	16131882	yjbQ	b4056	-	conserved protein
3808	 50.42	0	4268681..4269037	+	118	16131883	yjbR	b4057	-	conserved protein
3809	 56.08	+1	4269072..4271894	-	940	16131884	uvrA	b4058	-	ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
3810	 58.10	+1	4272148..4272684	+	178	16131885	ssb	b4059	-	single-stranded DNA-binding protein
3811	 52.48	0	4272783..4273064	-	93	90111681	yjcB	b4060	-	predicted inner membrane protein
3812	 44.74	-1	4273494..4275080	+	528	16131887	yjcC	b4061	-	predicted signal transduction protein (EAL domain containing protein)
3813	 50.93	0	4275083..4275406	-	107	16131888	soxS	b4062	-	DNA-binding transcriptional dual regulator
3814	 52.04	0	4275492..4275956	+	154	16131889	soxR	b4063	-	DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing
3815	 55.93	+1	4276502..4277851	+	449	16131890	yjcD	b4064	-	predicted permease
3816	 55.82	0	4278003..4279652	+	549	16131891	yjcE	b4065	-	predicted cation/proton antiporter
3817	 32.95	-2	4279806..4281098	-	430	16131892	yjcF	b4066	-	conserved protein
3818	 55.76	0	4281276..4282925	-	549	16131893	actP	b4067	-	acetate transporter
3819	 49.21	0	4282922..4283236	-	104	16131894	yjcH	b4068	-	conserved inner membrane protein involved in acetate transport
3820	 56.87	+1	4283436..4285394	-	652	16131895	acs	b4069	-	acetyl-CoA synthetase
3821	 52.26	0	4285787..4287223	+	478	16131896	nrfA	b4070	-	nitrite reductase, formate-dependent, cytochrome
3822	 53.97	0	4287268..4287834	+	188	90111682	nrfB	b4071	-	nitrite reductase, formate-dependent, penta-heme cytochrome c
3823	 57.89	+1	4287831..4288502	+	223	16131898	nrfC	b4072	-	formate-dependent nitrite reductase, 4Fe4S subunit
3824	 57.58	+1	4288499..4289455	+	318	16131899	nrfD	b4073	-	formate-dependent nitrite reductase, membrane subunit
3825	 57.32	+1	4289535..4291193	+	552