IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3692	 52.26	0	4116868..4117353	-	161	16131767	rraA	b3929	-	ribonuclease E (RNase E) inhibitor protein
3693	 53.40	0	4117446..4118372	-	308	16131768	menA	b3930	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3694	 52.63	0	4118439..4119770	-	443	16131769	hslU	b3931	-	molecular chaperone and ATPase component of HslUV protease
3695	 52.73	0	4119780..4120310	-	176	16131770	hslV	b3932	-	peptidase component of the HslUV protease
3696	 57.40	+1	4120403..4121362	-	319	16131771	ftsN	b3933	-	essential cell division protein
3697	 52.05	0	4121454..4122479	-	341	16131772	cytR	b3934	-	DNA-binding transcriptional dual regulator
3698	 57.48	+1	4122635..4124833	-	732	16131773	priA	b3935	-	Primosome factor n' (replication factor Y)
3699	 49.30	0	4125036..4125248	+	70	16131774	rpmE	b3936	-	50S ribosomal subunit protein L31
3700	 52.38	0	4125309..4125917	-	202	16131775	yiiX	b3937	-	predicted peptidoglycan peptidase
3701	 51.89	0	4126101..4126418	-	105	16131776	metJ	b3938	-	DNA-binding transcriptional repressor, S-adenosylmethionine-binding
3702	 54.95	0	4126695..4127855	+	386	16131777	metB	b3939	-	cystathionine gamma-synthase, PLP-dependent
3703	 58.32	+1	4127858..4130290	+	810	16131778	metL	b3940	-	fused aspartokinase II/homoserine dehydrogenase II
3704	 51.85	0	4130639..4131529	+	296	16131779	metF	b3941	-	5,10-methylenetetrahydrofolate reductase
3705	 55.75	0	4131858..4134038	+	726	16131780	katG	b3942	-	catalase/hydroperoxidase HPI(I)
3706	 54.08	0	4134131..4135036	+	301	90111667	yijE	b3943	-	predicted permease
3707	 52.59	0	4135063..4135680	-	205	16131782	yijF	b3944	-	conserved protein
3708	 54.71	0	4135955..4137058	-	367	90111668	gldA	b3945	-	glycerol dehydrogenase, NAD
3709	 53.39	0	4137069..4137731	-	220	16131784	fsaB	b3946	-	fructose-6-phosphate aldolase 2
3710	 55.36	0	4137743..4140244	-	833	49176446	ptsA	b3947	-	fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component
3711	 54.17	0	4140553..4141632	+	359	16131787	frwC	b3949	-	predicted enzyme IIC component of PTS
3712	 49.22	0	4141647..4141967	+	106	16131788	frwB	b3950	-	predicted enzyme IIB component of PTS
3713	 53.13	0	4142018..4144315	+	765	16131789	pflD	b3951	-	predicted formate acetyltransferase 2 (pyruvate formate lyase II)
3714	 54.95	0	4144281..4145159	+	292	49176447	pflC	b3952	-	pyruvate formate lyase II activase
3715	 56.14	+1	4145161..4145502	+	113	16131791	frwD	b3953	-	predicted enzyme IIB component of PTS
3716	 53.05	0	4145489..4146340	-	283	16131792	yijO	b3954	-	predicted DNA-binding transcriptional regulator
3717	 50.00	0	4146555..4148288	-	577	16131793	yijP	b3955	-	conserved inner membrane protein
3718	 55.66	0	4148470..4151121	-	883	16131794	ppc	b3956	-	phosphoenolpyruvate carboxylase
3719	 51.74	0	4151719..4152870	-	383	16131795	argE	b3957	-	acetylornithine deacetylase
3720	 53.53	0	4153024..4154028	+	334	16131796	argC	b3958	-	N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding
3721	 55.47	0	4154036..4154812	+	258	145698337	argB	b3959	-	acetylglutamate kinase
3722	 56.48	+1	4154873..4156246	+	457	16131798	argH	b3960	-	argininosuccinate lyase
3723	 55.45	0	4156513..4157430	+	305	16131799	oxyR	b3961	-	DNA-binding transcriptional dual regulator
3724	 51.82	0	4157413..4158813	-	466	90111670	sthA	b3962	-	pyridine nucleotide transhydrogenase, soluble
3725	 53.40	0	4159147..4159794	+	215	145698338	fabR	b3963	-	DNA-binding transcriptional repressor
3726	 49.17	0	4159794..4160153	+	119	16131802	yijD	b3964	-	conserved inner membrane protein
3727	 50.86	0	4160193..4161293	-	366	16131803	trmA	b3965	-	tRNA (uracil-5-)-methyltransferase
3728	 50.24	0	4161662..4163506	+	614	16131804	btuB	b3966	-	vitamin B12/cobalamin outer membrane transporter
3729	 51.52	0	4163451..4164308	+	285	90111671	murI	b3967	-	glutamate racemase
3730	 45.97	-1	4170080..4171108	+	342	16131806	murB	b3972	-	UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding
3731	 49.38	0	4171105..4172070	+	321	16131807	birA	b3973	-	bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor, bio-5'-AMP-binding
3732	 44.06	-1	4172099..4173049	-	316	16131808	coaA	b3974	-	pantothenate kinase
3733	 53.42	0	4173967..4175151	+	394	16131810	tufB	b3980	-	protein chain elongation factor EF-Tu (duplicate of tufA)
3734	 54.95	0	4175381..4175764	+	127	16131811	secE	b3981	-	preprotein translocase membrane subunit
3735	 51.65	0	4175766..4176311	+	181	16131812	nusG	b3982	-	transcription termination factor
3736	 52.21	0	4176470..4176898	+	142	16131813	rplK	b3983	-	50S ribosomal subunit protein L11
3737	 51.63	0	4176902..4177606	+	234	16131814	rplA	b3984	-	50S ribosomal subunit protein L1
3738	 52.41	0	4178019..4178516	+	165	16131815	rplJ	b3985	-	50S ribosomal subunit protein L10
3739	 46.17	-1	4178583..4178948	+	121	16131816	rplL	b3986	-	50S ribosomal subunit protein L7/L12
3740	 52.62	0	4179268..4183296	+	1342	16131817	rpoB	b3987	-	RNA polymerase, beta subunit
3741	 53.84	0	4183373..4187596	+	1407	16131818	rpoC	b3988	-	RNA polymerase, beta prime subunit
3742	 42.41	-1	4187809..4188348	+	179	16131819	yjaZ	b3989	-	heat shock protein
3743	 55.03	0	4188758..4189891	-	377	16131820	thiH	b3990	-	thiamin biosynthesis ThiGH complex subunit
3744	 58.50	+1	4189888..4190658	-	256	33347812	thiG	b3991	-	thiamin biosynthesis ThiGH complex subunit
3745	 55.72	0	4190660..4190860	-	66	49176448	thiS	b4407	-	sulphur carrier protein
3746	 57.54	+1	4190844..4191599	-	251	90111672	thiF	b3992	-	thiamin (thiazole moiety) biosynthesis protein
3747	 58.02	+1	4191592..4192227	-	211	16131823	thiE	b3993	-	thiamin phosphate synthase (thiamin phosphate pyrophosphorylase)
3748	 55.75	0	4192227..4194122	-	631	16131824	thiC	b3994	-	thiamin (pyrimidine moiety) biosynthesis protein
3749	 49.06	0	4194355..4194831	-	158	16131825	rsd	b3995	-	stationary phase protein, binds sigma 70 RNA polymerase subunit
3750	 53.23	0	4194926..4195699	+	257	49176450	nudC	b3996	-	NADH pyrophosphatase
3751	 56.06	+1	4195739..4196803	+	354	16131827	hemE	b3997	-	uroporphyrinogen decarboxylase
3752	 58.78	+1	4196813..4197484	+	223	90111673	nfi	b3998	-	endonuclease V
3753	 48.56	0	4197527..4198117	+	196	16131829	yjaG	b3999	-	conserved protein
3754	 48.35	0	4198304..4198576	+	90	16131830	hupA	b4000	-	HU, DNA-binding transcriptional regulator, alpha subunit
3755	 53.45	0	4198589..4199284	+	231	16131831	yjaH	b4001	-	conserved protein
3756	 53.52	0	4199286..4199711	-	141	90111674	zraP	b4002	-	Zn-binding periplasmic protein
3757	 54.29	0	4199949..4201346	+	465	16131833	zraS	b4003	-	sensory histidine kinase in two-component regulatory system with ZraR
3758	 56.26	+1	4201343..4202668	+	441	16131834	zraR	b4004	-	fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein
3759	 58.22	+1	4202665..4203954	-	429	16131835	purD	b4005	-	phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase
3760	 56.29	+1	4203966..4205555	-	529	16131836	purH	b4006	-	fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase
3761	 45.31	-1	4211257..4211640	+	127	16131837	yjaA	b4011	-	conserved protein
3762	 54.50	0	4211703..4212146	-	147	16131838	yjaB	b4012	-	predicted acetyltransferase
3763	 50.00	0	4212303..4213232	+	309	16131839	metA	b4013	-	homoserine O-transsuccinylase
3764	 51.75	0	4213501..4215102	+	533	16131840	aceB	b4014	-	malate synthase A
3765	 55.33	0	4215132..4216436	+	434	16131841	aceA	b4015	-	isocitrate lyase
3766	 52.79	0	4216619..4218355	+	578	16131842	aceK	b4016	-	isocitrate dehydrogenase kinase/phosphatase
3767	 37.63	-2	4218324..4220510	-	728	16131843	arpA	b4017	-	ankyrin repeat protein, function unknown
3768	 54.18	0	4220827..4221651	-	274	90111675	iclR	b4018	-	DNA-binding transcriptional repressor
3769	 55.84	0	4221851..4225534	+	1227	16131845	metH	b4019	-	homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent
3770	 55.33	0	4225754..4227385	+	543	16131846	yjbB	b4020	-	predicted transporter
3771	 54.35	0	4227476..4228165	-	229	16131847	pepE	b4021	-	(alpha)-aspartyl dipeptidase
3772	 51.55	0	4228377..4229249	+	290	16131848	rluF	b4022	-	23S rRNA pseudouridine synthase
3773	 49.45	0	4229382..4229654	-	90	16131849	pagB	b4023	-	conserved protein
3774	 53.85	0	4229907..4231256	-	449	16131850	lysC	b4024	-	aspartokinase III
3775	 51.33	0	4231781..4233430	+	549	16131851	pgi	b4025	-	glucosephosphate isomerase
3776	 60.49	+1	4233929..4234171	+	80	16131852	yjbE	b4026	-	predicted protein
3777	 54.77	0	4234285..4234923	+	212	90111676	yjbF	b4027	-	predicted lipoprotein
3778	 58.67	+1	4234920..4235657	+	245	16131854	yjbG	b4028	-	conserved protein
3779	 54.03	0	4235657..4237753	+	698	16131855	yjbH	b4029	-	predicted porin
3780	 49.10	0	4237800..4238078	-	92	145698339	yjbT	b4620	-	hypothetical protein, no homologs
3781	 49.15	0	4238348..4238758	+	136