IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3654	 46.12	-1	4077774..4077992	+	72	90111663	yiiF	b3890	-	conserved protein
3655	 54.62	0	4078322..4079251	-	309	16131731	fdhE	b3891	-	formate dehydrogenase formation protein
3656	 52.52	0	4079248..4079883	-	211	16131732	fdoI	b3892	-	formate dehydrogenase-O, cytochrome b556 subunit
3657	 55.48	0	4079880..4080782	-	300	16131733	fdoH	b3893	-	formate dehydrogenase-O, Fe-S subunit
3658	 55.10	0	4080795..4083845	-	1016	16131734	fdoG	b3894	-	formate dehydrogenase-O, large subunit
3659	 53.12	0	4084039..4084872	+	277	16131735	fdhD	b3895	-	formate dehydrogenase formation protein
3660	 45.64	-1	4085025..4086080	+	351	16131736	yiiG	b3896	-	conserved protein
3661	 50.03	0	4086130..4087878	-	582	16131737	frvR	b3897	-	predicted regulator
3662	 52.57	0	4087878..4088948	-	356	16131738	frvX	b3898	-	predicted endo-1,4-beta-glucanase
3663	 55.92	+1	4088938..4090389	-	483	90111664	frvB	b3899	-	fused predicted PTS enzymes: IIB component/IIC component
3664	 50.11	0	4090400..4090846	-	148	16131740	frvA	b3900	-	predicted enzyme IIA component of PTS
3665	 50.79	0	4091147..4091461	-	104	16131741	rhaM	b3901	-	L-rhamnose mutarotase
3666	 55.76	0	4091471..4092295	-	274	16131742	rhaD	b3902	-	rhamnulose-1-phosphate aldolase
3667	 56.11	+1	4092746..4094005	-	419	49176441	rhaA	b3903	-	L-rhamnose isomerase
3668	 54.76	0	4094002..4095471	-	489	16131744	rhaB	b3904	-	rhamnulokinase
3669	 51.85	0	4095759..4096595	+	278	16131745	rhaS	b3905	-	DNA-binding transcriptional activator, L-rhamnose-binding
3670	 50.18	0	4096669..4097517	+	282	171701684	rhaR	b3906	-	DNA-binding transcriptional activator, L-rhamnose-binding
3671	 51.69	0	4097514..4098548	-	344	16131747	rhaT	b3907	-	L-rhamnose:proton symporter
3672	 53.30	0	4098833..4099453	+	206	49176442	sodA	b3908	-	superoxide dismutase, Mn
3673	 52.74	0	4099713..4100696	+	327	90111665	kdgT	b3909	-	2-keto-3-deoxy-D-gluconate transporter
3674	 53.04	0	4100845..4101519	+	224	90111666	yiiM	b3910	-	conserved protein
3675	 54.59	0	4101625..4102998	-	457	16131751	cpxA	b3911	-	sensory histidine kinase in two-component regulatory system with CpxR
3676	 51.36	0	4102995..4103693	-	232	16131752	cpxR	b3912	-	DNA-binding response regulator in two-component regulatory system with CpxA
3677	 50.10	0	4103843..4104343	+	166	49176443	cpxP	b4484	-	periplasmic protein combats stress
3678	 52.16	0	4104492..4105394	+	300	16131753	fieF	b3915	-	zinc transporter
3679	 53.48	0	4105575..4106537	+	320	16131754	pfkA	b3916	-	6-phosphofructokinase I
3680	 50.61	0	4106857..4107846	+	329	16131755	sbp	b3917	-	sulfate transporter subunit
3681	 48.68	0	4107953..4108708	+	251	16131756	cdh	b3918	-	CDP-diacylglycerol phosphotidylhydrolase
3682	 52.60	0	4108763..4109530	-	255	16131757	tpiA	b3919	-	triosephosphate isomerase
3683	 49.17	0	4109638..4110237	-	199	16131758	yiiQ	b3920	-	conserved protein
3684	 49.43	0	4110338..4110778	+	146	16131759	yiiR	b3921	-	conserved inner membrane protein
3685	 46.33	-1	4110990..4111289	+	99	16131760	yiiS	b3922	-	conserved protein
3686	 43.12	-1	4111316..4111744	+	142	16131761	uspD	b3923	-	stress-induced protein
3687	 53.55	0	4111749..4112495	-	248	16131762	fpr	b3924	-	ferredoxin-NADP reductase
3688	 56.78	+1	4112592..4113602	-	336	16131763	glpX	b3925	-	fructose 1,6-bisphosphatase II
3689	 54.08	0	4113737..4115245	-	502	16131764	glpK	b3926	-	glycerol kinase
3690	 50.95	0	4115268..4116113	-	281	16131765	glpF	b3927	-	glycerol facilitator
3691	 48.37	0	4116538..4116783	+	81	16131766	yiiU	b3928	-	conserved protein
3692	 52.26	0	4116868..4117353	-	161	16131767	rraA	b3929	-	ribonuclease E (RNase E) inhibitor protein
3693	 53.40	0	4117446..4118372	-	308	16131768	menA	b3930	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3694	 52.63	0	4118439..4119770	-	443	16131769	hslU	b3931	-	molecular chaperone and ATPase component of HslUV protease
3695	 52.73	0	4119780..4120310	-	176	16131770	hslV	b3932	-	peptidase component of the HslUV protease
3696	 57.40	+1	4120403..4121362	-	319	16131771	ftsN	b3933	-	essential cell division protein
3697	 52.05	0	4121454..4122479	-	341	16131772	cytR	b3934	-	DNA-binding transcriptional dual regulator
3698	 57.48	+1	4122635..4124833	-	732	16131773	priA	b3935	-	Primosome factor n' (replication factor Y)
3699	 49.30	0	4125036..4125248	+	70	16131774	rpmE	b3936	-	50S ribosomal subunit protein L31
3700	 52.38	0	4125309..4125917	-	202	16131775	yiiX	b3937	-	predicted peptidoglycan peptidase
3701	 51.89	0	4126101..4126418	-	105	16131776	metJ	b3938	-	DNA-binding transcriptional repressor, S-adenosylmethionine-binding
3702	 54.95	0	4126695..4127855	+	386	16131777	metB	b3939	-	cystathionine gamma-synthase, PLP-dependent
3703	 58.32	+1	4127858..4130290	+	810	16131778	metL	b3940	-	fused aspartokinase II/homoserine dehydrogenase II
3704	 51.85	0	4130639..4131529	+	296	16131779	metF	b3941	-	5,10-methylenetetrahydrofolate reductase
3705	 55.75	0	4131858..4134038	+	726	16131780	katG	b3942	-	catalase/hydroperoxidase HPI(I)
3706	 54.08	0	4134131..4135036	+	301	90111667	yijE	b3943	-	predicted permease
3707	 52.59	0	4135063..4135680	-	205	16131782	yijF	b3944	-	conserved protein
3708	 54.71	0	4135955..4137058	-	367	90111668	gldA	b3945	-	glycerol dehydrogenase, NAD
3709	 53.39	0	4137069..4137731	-	220	16131784	fsaB	b3946	-	fructose-6-phosphate aldolase 2
3710	 55.36	0	4137743..4140244	-	833	49176446	ptsA	b3947	-	fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component
3711	 54.17	0	4140553..4141632	+	359	16131787	frwC	b3949	-	predicted enzyme IIC component of PTS
3712	 49.22	0	4141647..4141967	+	106	16131788	frwB	b3950	-	predicted enzyme IIB component of PTS
3713	 53.13	0	4142018..4144315	+	765	16131789	pflD	b3951	-	predicted formate acetyltransferase 2 (pyruvate formate lyase II)
3714	 54.95	0	4144281..4145159	+	292	49176447	pflC	b3952	-	pyruvate formate lyase II activase
3715	 56.14	+1	4145161..4145502	+	113	16131791	frwD	b3953	-	predicted enzyme IIB component of PTS
3716	 53.05	0	4145489..4146340	-	283	16131792	yijO	b3954	-	predicted DNA-binding transcriptional regulator
3717	 50.00	0	4146555..4148288	-	577	16131793	yijP	b3955	-	conserved inner membrane protein
3718	 55.66	0	4148470..4151121	-	883	16131794	ppc	b3956	-	phosphoenolpyruvate carboxylase
3719	 51.74	0	4151719..4152870	-	383	16131795	argE	b3957	-	acetylornithine deacetylase
3720	 53.53	0	4153024..4154028	+	334	16131796	argC	b3958	-	N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding
3721	 55.47	0	4154036..4154812	+	258	145698337	argB	b3959	-	acetylglutamate kinase
3722	 56.48	+1	4154873..4156246	+	457	16131798	argH	b3960	-	argininosuccinate lyase
3723	 55.45	0	4156513..4157430	+	305	16131799	oxyR	b3961	-	DNA-binding transcriptional dual regulator
3724	 51.82	0	4157413..4158813	-	466	90111670	sthA	b3962	-	pyridine nucleotide transhydrogenase, soluble
3725	 53.40	0	4159147..4159794	+	215	145698338	fabR	b3963	-	DNA-binding transcriptional repressor
3726	 49.17	0	4159794..4160153	+	119	16131802	yijD	b3964	-	conserved inner membrane protein
3727	 50.86	0	4160193..4161293	-	366	16131803	trmA	b3965	-	tRNA (uracil-5-)-methyltransferase
3728	 50.24	0	4161662..4163506	+	614	16131804	btuB	b3966	-	vitamin B12/cobalamin outer membrane transporter
3729	 51.52	0	4163451..4164308	+	285	90111671	murI	b3967	-	glutamate racemase
3730	 45.97	-1	4170080..4171108	+	342	16131806	murB	b3972	-	UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding
3731	 49.38	0	4171105..4172070	+	321	16131807	birA	b3973	-	bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor, bio-5'-AMP-binding
3732	 44.06	-1	4172099..4173049	-	316	16131808	coaA	b3974	-	pantothenate kinase
3733	 53.42	0	4173967..4175151	+	394	16131810	tufB	b3980	-	protein chain elongation factor EF-Tu (duplicate of tufA)
3734	 54.95	0	4175381..4175764	+	127	16131811	secE	b3981	-	preprotein translocase membrane subunit
3735	 51.65	0	4175766..4176311	+	181	16131812	nusG	b3982	-	transcription termination factor
3736	 52.21	0	4176470..4176898	+	142	16131813	rplK	b3983	-	50S ribosomal subunit protein L11
3737	 51.63	0	4176902..4177606	+	234	16131814	rplA	b3984	-	50S ribosomal subunit protein L1
3738	 52.41	0	4178019..4178516	+	165	16131815	rplJ	b3985	-	50S ribosomal subunit protein L10
3739	 46.17	-1	4178583..4178948	+	121	16131816	rplL	b3986	-	50S ribosomal subunit protein L7/L12
3740	 52.62	0	4179268..4183296	+	1342	16131817	rpoB	b3987	-	RNA polymerase, beta subunit
3741	 53.84	0	4183373..4187596	+	1407	16131818	rpoC	b3988	-	RNA polymerase, beta prime subunit
3742	 42.41	-1	4187809..4188348	+	179	16131819	yjaZ	b3989	-	heat shock protein
3743	 55.03	0	4188758..4189891	-	377	16131820	thiH	b3990	-	thiamin biosynthesis ThiGH complex subunit
3744	 58.50	+1	4189888..4190658	-	2