IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3609	 55.43	0	4020241..4020756	+	171	49176428	tatB	b3838	-	TatABCE protein translocation system subunit
3610	 51.61	0	4020759..4021535	+	258	16131687	tatC	b3839	-	TatABCE protein translocation system subunit
3611	 54.28	0	4021577..4022359	+	260	49176429	tatD	b4483	-	DNase, magnesium-dependent
3612	 49.69	0	4022356..4022844	-	162	16131688	rfaH	b3842	-	DNA-binding transcriptional antiterminator
3613	 53.82	0	4023011..4024504	+	497	16131689	ubiD	b3843	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3614	 52.85	0	4024550..4025251	+	233	16131690	fre	b3844	-	flavin reductase
3615	 57.73	+1	4025632..4026795	-	387	49176430	fadA	b3845	-	3-ketoacyl-CoA thiolase (thiolase I)
3616	 55.21	0	4026805..4028994	-	729	16131692	fadB	b3846	-	fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
3617	 53.68	0	4029184..4030515	+	443	16131693	pepQ	b3847	-	proline dipeptidase
3618	 55.61	0	4030515..4031129	+	204	90111654	yigZ	b3848	-	predicted elongation factor
3619	 53.10	0	4031168..4032619	+	483	49176432	trkH	b3849	-	potassium transporter
3620	 51.83	0	4032631..4033176	+	181	16131696	hemG	b3850	-	protoporphyrin oxidase, flavoprotein
3621	 48.67	0	4038929..4039456	-	175	145698333	mobB	b3856	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3622	 50.09	0	4039438..4040022	-	194	16131698	mobA	b3857	-	molybdopterin-guanine dinucleotide synthase
3623	 46.30	-1	4040092..4040361	+	89	16131699	yihD	b3858	-	conserved protein
3624	 48.63	0	4040438..4041424	+	328	16131700	rdoA	b3859	-	Thr/Ser kinase implicated in Cpx stress response
3625	 48.01	0	4041441..4042067	+	208	16131701	dsbA	b3860	-	periplasmic protein disulfide isomerase I
3626	 41.65	-2	4042222..4043652	+	476	90111655	yihF	b3861	-	conserved protein
3627	 45.12	-1	4043693..4044625	-	310	16131703	yihG	b3862	-	predicted endonuclease
3628	 51.96	0	4044989..4047775	+	928	16131704	polA	b3863	-	DNA polymerase I
3629	 51.66	0	4048156..4048788	-	210	145698334	yihA	b3865	-	GTP-binding protein
3630	 52.35	0	4049370..4049879	+	169	16131706	yihI	b3866	-	conserved protein
3631	 53.13	0	4050068..4051441	+	457	90111657	hemN	b3867	-	coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent
3632	 56.95	+1	4051892..4053301	-	469	16131708	glnG	b3868	-	fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein
3633	 55.24	0	4053313..4054362	-	349	16131709	glnL	b3869	-	sensory histidine kinase in two-component regulatory system with GlnG
3634	 52.91	0	4054648..4056057	-	469	16131710	glnA	b3870	-	glutamine synthetase
3635	 53.45	0	4056430..4058253	+	607	49176434	typA	b3871	-	GTP-binding protein
3636	 49.09	0	4058470..4059180	+	236	16131712	yihL	b3872	-	predicted DNA-binding transcriptional regulator
3637	 43.93	-1	4059188..4060168	+	326	16131713	yihM	b3873	-	predicted sugar phosphate isomerase
3638	 45.02	-1	4060270..4061535	+	421	16131714	yihN	b3874	-	predicted transporter
3639	 40.84	-2	4061626..4062318	-	230	16131715	ompL	b3875	-	predicted outer membrane porin L
3640	 45.01	-1	4062386..4063789	-	467	49176435	yihO	b3876	-	predicted transporter
3641	 52.38	0	4063832..4065217	-	461	145698335	yihP	b3877	-	predicted transporter
3642	 53.51	0	4065263..4067299	-	678	16131718	yihQ	b3878	-	alpha-glucosidase
3643	 48.22	0	4067498..4068424	-	308	49176437	yihR	b3879	-	predicted aldose-1-epimerase
3644	 53.30	0	4068538..4069779	-	413	90111658	yihS	b3880	-	predicted glucosamine isomerase
3645	 53.81	0	4069796..4070674	-	292	16131721	yihT	b3881	-	predicted aldolase
3646	 55.30	0	4070698..4071594	-	298	16131722	yihU	b3882	-	predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain
3647	 55.63	0	4071762..4072658	+	298	90111659	yihV	b3883	-	predicted sugar kinase
3648	 52.42	0	4072692..4073477	+	261	90111660	yihW	b3884	-	predicted DNA-binding transcriptional regulator
3649	 50.50	0	4073576..4074175	+	199	90111661	yihX	b3885	-	predicted hydrolase
3650	 50.86	0	4074169..4075041	+	290	16131726	yihY	b3886	-	predicted inner membrane protein
3651	 55.02	0	4075038..4075475	+	145	16131727	dtd	b3887	-	D-tyr-tRNA(Tyr) deacylase
3652	 55.05	0	4075472..4076461	+	329	16131728	yiiD	b3888	-	predicted acetyltransferase
3653	 46.48	0	4077320..4077532	+	70	145698336	yiiE	b3889	-	predicted transcriptional regulator
3654	 46.12	-1	4077774..4077992	+	72	90111663	yiiF	b3890	-	conserved protein
3655	 54.62	0	4078322..4079251	-	309	16131731	fdhE	b3891	-	formate dehydrogenase formation protein
3656	 52.52	0	4079248..4079883	-	211	16131732	fdoI	b3892	-	formate dehydrogenase-O, cytochrome b556 subunit
3657	 55.48	0	4079880..4080782	-	300	16131733	fdoH	b3893	-	formate dehydrogenase-O, Fe-S subunit
3658	 55.10	0	4080795..4083845	-	1016	16131734	fdoG	b3894	-	formate dehydrogenase-O, large subunit
3659	 53.12	0	4084039..4084872	+	277	16131735	fdhD	b3895	-	formate dehydrogenase formation protein
3660	 45.64	-1	4085025..4086080	+	351	16131736	yiiG	b3896	-	conserved protein
3661	 50.03	0	4086130..4087878	-	582	16131737	frvR	b3897	-	predicted regulator
3662	 52.57	0	4087878..4088948	-	356	16131738	frvX	b3898	-	predicted endo-1,4-beta-glucanase
3663	 55.92	+1	4088938..4090389	-	483	90111664	frvB	b3899	-	fused predicted PTS enzymes: IIB component/IIC component
3664	 50.11	0	4090400..4090846	-	148	16131740	frvA	b3900	-	predicted enzyme IIA component of PTS
3665	 50.79	0	4091147..4091461	-	104	16131741	rhaM	b3901	-	L-rhamnose mutarotase
3666	 55.76	0	4091471..4092295	-	274	16131742	rhaD	b3902	-	rhamnulose-1-phosphate aldolase
3667	 56.11	+1	4092746..4094005	-	419	49176441	rhaA	b3903	-	L-rhamnose isomerase
3668	 54.76	0	4094002..4095471	-	489	16131744	rhaB	b3904	-	rhamnulokinase
3669	 51.85	0	4095759..4096595	+	278	16131745	rhaS	b3905	-	DNA-binding transcriptional activator, L-rhamnose-binding
3670	 50.18	0	4096669..4097517	+	282	171701684	rhaR	b3906	-	DNA-binding transcriptional activator, L-rhamnose-binding
3671	 51.69	0	4097514..4098548	-	344	16131747	rhaT	b3907	-	L-rhamnose:proton symporter
3672	 53.30	0	4098833..4099453	+	206	49176442	sodA	b3908	-	superoxide dismutase, Mn
3673	 52.74	0	4099713..4100696	+	327	90111665	kdgT	b3909	-	2-keto-3-deoxy-D-gluconate transporter
3674	 53.04	0	4100845..4101519	+	224	90111666	yiiM	b3910	-	conserved protein
3675	 54.59	0	4101625..4102998	-	457	16131751	cpxA	b3911	-	sensory histidine kinase in two-component regulatory system with CpxR
3676	 51.36	0	4102995..4103693	-	232	16131752	cpxR	b3912	-	DNA-binding response regulator in two-component regulatory system with CpxA
3677	 50.10	0	4103843..4104343	+	166	49176443	cpxP	b4484	-	periplasmic protein combats stress
3678	 52.16	0	4104492..4105394	+	300	16131753	fieF	b3915	-	zinc transporter
3679	 53.48	0	4105575..4106537	+	320	16131754	pfkA	b3916	-	6-phosphofructokinase I
3680	 50.61	0	4106857..4107846	+	329	16131755	sbp	b3917	-	sulfate transporter subunit
3681	 48.68	0	4107953..4108708	+	251	16131756	cdh	b3918	-	CDP-diacylglycerol phosphotidylhydrolase
3682	 52.60	0	4108763..4109530	-	255	16131757	tpiA	b3919	-	triosephosphate isomerase
3683	 49.17	0	4109638..4110237	-	199	16131758	yiiQ	b3920	-	conserved protein
3684	 49.43	0	4110338..4110778	+	146	16131759	yiiR	b3921	-	conserved inner membrane protein
3685	 46.33	-1	4110990..4111289	+	99	16131760	yiiS	b3922	-	conserved protein
3686	 43.12	-1	4111316..4111744	+	142	16131761	uspD	b3923	-	stress-induced protein
3687	 53.55	0	4111749..4112495	-	248	16131762	fpr	b3924	-	ferredoxin-NADP reductase
3688	 56.78	+1	4112592..4113602	-	336	16131763	glpX	b3925	-	fructose 1,6-bisphosphatase II
3689	 54.08	0	4113737..4115245	-	502	16131764	glpK	b3926	-	glycerol kinase
3690	 50.95	0	4115268..4116113	-	281	16131765	glpF	b3927	-	glycerol facilitator
3691	 48.37	0	4116538..4116783	+	81	16131766	yiiU	b3928	-	conserved protein
3692	 52.26	0	4116868..4117353	-	161	16131767	rraA	b3929	-	ribonuclease E (RNase E) inhibitor protein
3693	 53.40	0	4117446..4118372	-	308	16131768	menA	b3930	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3694	 52.63	0	4118439..4119770	-	443	16131769	hslU	b3931	-	molecular chaperone and ATPase component of HslUV protease
3695	 52.73	0	4119780..4120310	-	176	16131770	hslV	b3932	-	peptidase component of the HslUV protease
3696	 57.40	+1	4120403..4121362	-	319	16131771	ftsN	b3933	-	essential cell division protein
3697	 52.05	0	4121454..4122479	-	341	16131772	cytR	b3934	-	DNA-binding transcriptional dual regulator
3698	 57.48	+1	4122635..4124833	-	732	16131773	priA	b3935	-	Primosome factor n' (replication factor Y)
3699	 49.30	0	4125036..4125248	+	70