IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3577	 52.90	0	3987111..3987851	-	246	16131656	hemD	b3804	-	uroporphyrinogen III synthase
3578	 56.16	+1	3987848..3988789	-	313	49176416	hemC	b3805	-	hydroxymethylbilane synthase
3579	 51.94	0	3989176..3991722	+	848	16131658	cyaA	b3806	-	adenylate cyclase
3580	 53.89	0	3991762..3992082	-	106	16131659	cyaY	b3807	-	frataxin, iron-binding and oxidizing protein
3581	 52.45	0	3992545..3992748	+	67	94541130	yifL	b4558	-	predicted lipoprotein
3582	 55.15	0	3992785..3993609	+	274	90111650	dapF	b3809	-	diaminopimelate epimerase
3583	 55.79	0	3993606..3994313	+	235	16131662	yigA	b3810	-	conserved protein
3584	 53.96	0	3994310..3995206	+	298	16131663	xerC	b3811	-	site-specific tyrosine recombinase
3585	 55.79	0	3995206..3995922	+	238	16131664	yigB	b3812	-	predicted hydrolase
3586	 57.70	+1	3996006..3998168	+	720	16131665	uvrD	b3813	-	DNA-dependent ATPase I and helicase II
3587	 47.84	0	3998315..3999079	-	254	49176417	yigE	b4482	-	predicted protein
3588	 52.68	0	3999449..4000399	+	316	16131666	corA	b3816	-	magnesium/nickel/cobalt transporter
3589	 34.91	-2	4000442..4000822	-	126	16131667	yigF	b3817	-	conserved inner membrane protein
3590	 32.81	-2	4000836..4001216	-	126	90111651	yigG	b3818	-	predicted inner membrane protein
3591	 50.62	0	4001311..4002201	-	296	49176418	rarD	b3819	-	predicted chloramphenical resistance permease
3592	 53.21	0	4002253..4002720	-	155	90111652	yigI	b3820	-	conserved protein
3593	 51.26	0	4002885..4003754	+	289	16131671	pldA	b3821	-	outer membrane phospholipase A
3594	 55.14	0	4003887..4005716	+	609	162135918	recQ	b3822	-	ATP-dependent DNA helicase
3595	 52.50	0	4005780..4006400	+	206	49176421	rhtC	b3823	-	threonine efflux system
3596	 52.17	0	4006462..4007082	-	206	49176422	rhtB	b3824	-	neutral amino-acid efflux system
3597	 53.76	0	4007193..4008215	+	340	49176423	pldB	b3825	-	lysophospholipase L(2)
3598	 51.56	0	4008223..4009023	+	266	49176424	yigL	b3826	-	predicted hydrolase
3599	 55.56	0	4009099..4009998	+	299	16131676	yigM	b3827	-	predicted inner membrane protein
3600	 56.29	+1	4009886..4010839	-	317	16131677	metR	b3828	-	DNA-binding transcriptional activator, homocysteine-binding
3601	 56.23	+1	4011076..4013337	+	753	16131678	metE	b3829	-	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase
3602	 54.53	0	4013377..4014192	-	271	49176425	ysgA	b3830	-	predicted hydrolase
3603	 54.07	0	4014454..4015215	+	253	16131680	udp	b3831	-	uridine phosphorylase
3604	 53.08	0	4015356..4016783	+	475	16131681	rmuC	b3832	-	predicted recombination limiting protein
3605	 52.12	0	4016878..4017633	+	251	49176426	ubiE	b3833	-	bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase
3606	 55.78	0	4017647..4018252	+	201	16131683	yigP	b3834	-	conserved protein
3607	 49.97	0	4018249..4019889	+	546	16131684	ubiB	b3835	-	2-octaprenylphenol hydroxylase
3608	 45.56	-1	4019968..4020237	+	89	90111653	tatA	b3836	-	TatABCE protein translocation system subunit
3609	 55.43	0	4020241..4020756	+	171	49176428	tatB	b3838	-	TatABCE protein translocation system subunit
3610	 51.61	0	4020759..4021535	+	258	16131687	tatC	b3839	-	TatABCE protein translocation system subunit
3611	 54.28	0	4021577..4022359	+	260	49176429	tatD	b4483	-	DNase, magnesium-dependent
3612	 49.69	0	4022356..4022844	-	162	16131688	rfaH	b3842	-	DNA-binding transcriptional antiterminator
3613	 53.82	0	4023011..4024504	+	497	16131689	ubiD	b3843	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3614	 52.85	0	4024550..4025251	+	233	16131690	fre	b3844	-	flavin reductase
3615	 57.73	+1	4025632..4026795	-	387	49176430	fadA	b3845	-	3-ketoacyl-CoA thiolase (thiolase I)
3616	 55.21	0	4026805..4028994	-	729	16131692	fadB	b3846	-	fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
3617	 53.68	0	4029184..4030515	+	443	16131693	pepQ	b3847	-	proline dipeptidase
3618	 55.61	0	4030515..4031129	+	204	90111654	yigZ	b3848	-	predicted elongation factor
3619	 53.10	0	4031168..4032619	+	483	49176432	trkH	b3849	-	potassium transporter
3620	 51.83	0	4032631..4033176	+	181	16131696	hemG	b3850	-	protoporphyrin oxidase, flavoprotein
3621	 48.67	0	4038929..4039456	-	175	145698333	mobB	b3856	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3622	 50.09	0	4039438..4040022	-	194	16131698	mobA	b3857	-	molybdopterin-guanine dinucleotide synthase
3623	 46.30	-1	4040092..4040361	+	89	16131699	yihD	b3858	-	conserved protein
3624	 48.63	0	4040438..4041424	+	328	16131700	rdoA	b3859	-	Thr/Ser kinase implicated in Cpx stress response
3625	 48.01	0	4041441..4042067	+	208	16131701	dsbA	b3860	-	periplasmic protein disulfide isomerase I
3626	 41.65	-2	4042222..4043652	+	476	90111655	yihF	b3861	-	conserved protein
3627	 45.12	-1	4043693..4044625	-	310	16131703	yihG	b3862	-	predicted endonuclease
3628	 51.96	0	4044989..4047775	+	928	16131704	polA	b3863	-	DNA polymerase I
3629	 51.66	0	4048156..4048788	-	210	145698334	yihA	b3865	-	GTP-binding protein
3630	 52.35	0	4049370..4049879	+	169	16131706	yihI	b3866	-	conserved protein
3631	 53.13	0	4050068..4051441	+	457	90111657	hemN	b3867	-	coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent
3632	 56.95	+1	4051892..4053301	-	469	16131708	glnG	b3868	-	fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein
3633	 55.24	0	4053313..4054362	-	349	16131709	glnL	b3869	-	sensory histidine kinase in two-component regulatory system with GlnG
3634	 52.91	0	4054648..4056057	-	469	16131710	glnA	b3870	-	glutamine synthetase
3635	 53.45	0	4056430..4058253	+	607	49176434	typA	b3871	-	GTP-binding protein
3636	 49.09	0	4058470..4059180	+	236	16131712	yihL	b3872	-	predicted DNA-binding transcriptional regulator
3637	 43.93	-1	4059188..4060168	+	326	16131713	yihM	b3873	-	predicted sugar phosphate isomerase
3638	 45.02	-1	4060270..4061535	+	421	16131714	yihN	b3874	-	predicted transporter
3639	 40.84	-2	4061626..4062318	-	230	16131715	ompL	b3875	-	predicted outer membrane porin L
3640	 45.01	-1	4062386..4063789	-	467	49176435	yihO	b3876	-	predicted transporter
3641	 52.38	0	4063832..4065217	-	461	145698335	yihP	b3877	-	predicted transporter
3642	 53.51	0	4065263..4067299	-	678	16131718	yihQ	b3878	-	alpha-glucosidase
3643	 48.22	0	4067498..4068424	-	308	49176437	yihR	b3879	-	predicted aldose-1-epimerase
3644	 53.30	0	4068538..4069779	-	413	90111658	yihS	b3880	-	predicted glucosamine isomerase
3645	 53.81	0	4069796..4070674	-	292	16131721	yihT	b3881	-	predicted aldolase
3646	 55.30	0	4070698..4071594	-	298	16131722	yihU	b3882	-	predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain
3647	 55.63	0	4071762..4072658	+	298	90111659	yihV	b3883	-	predicted sugar kinase
3648	 52.42	0	4072692..4073477	+	261	90111660	yihW	b3884	-	predicted DNA-binding transcriptional regulator
3649	 50.50	0	4073576..4074175	+	199	90111661	yihX	b3885	-	predicted hydrolase
3650	 50.86	0	4074169..4075041	+	290	16131726	yihY	b3886	-	predicted inner membrane protein
3651	 55.02	0	4075038..4075475	+	145	16131727	dtd	b3887	-	D-tyr-tRNA(Tyr) deacylase
3652	 55.05	0	4075472..4076461	+	329	16131728	yiiD	b3888	-	predicted acetyltransferase
3653	 46.48	0	4077320..4077532	+	70	145698336	yiiE	b3889	-	predicted transcriptional regulator
3654	 46.12	-1	4077774..4077992	+	72	90111663	yiiF	b3890	-	conserved protein
3655	 54.62	0	4078322..4079251	-	309	16131731	fdhE	b3891	-	formate dehydrogenase formation protein
3656	 52.52	0	4079248..4079883	-	211	16131732	fdoI	b3892	-	formate dehydrogenase-O, cytochrome b556 subunit
3657	 55.48	0	4079880..4080782	-	300	16131733	fdoH	b3893	-	formate dehydrogenase-O, Fe-S subunit
3658	 55.10	0	4080795..4083845	-	1016	16131734	fdoG	b3894	-	formate dehydrogenase-O, large subunit
3659	 53.12	0	4084039..4084872	+	277	16131735	fdhD	b3895	-	formate dehydrogenase formation protein
3660	 45.64	-1	4085025..4086080	+	351	16131736	yiiG	b3896	-	conserved protein
3661	 50.03	0	4086130..4087878	-	582	16131737	frvR	b3897	-	predicted regulator
3662	 52.57	0	4087878..4088948	-	356	16131738	frvX	b3898	-	predicted endo-1,4-beta-glucanase
3663	 55.92	+1	4088938..4090389	-	483	90111664	frvB	b3899	-	fused predicted PTS enzymes: IIB component/IIC component
3664	 50.11	0	4090400..4090846	-	148	16131740	frvA	b3900	-	predicted enzyme IIA component of PTS
3665	 50.79	0	4091147..4091461	-	104	16131741	rhaM	b3901	-	L-rhamnose mutarotase
3666	 55.76	0	4091471..4092295	-	274	16131742	rhaD	b3902	-	rhamnulose-1-phosphate aldolase
3667	 56.11	+1	4092746..4094005	-	419