IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3022	 47.31	0	3367036..3367500	-	154	16131111	yhcH	b3221	-	conserved protein
3023	 58.45	+1	3367497..3368372	-	291	90111558	nanK	b3222	-	predicted N-acetylmannosamine kinase
3024	 58.26	+1	3368369..3369058	-	229	16131113	nanE	b3223	-	predicted N-acetylmannosamine-6-P epimerase
3025	 55.06	0	3369106..3370596	-	496	90111559	nanT	b3224	-	sialic acid transporter
3026	 52.01	0	3370705..3371598	-	297	16131115	nanA	b3225	-	N-acetylneuraminate lyase
3027	 52.27	0	3371720..3372511	-	263	49176329	nanR	b3226	-	DNA-binding transcriptional dual regulator
3028	 51.02	0	3372891..3374258	+	455	16131117	dcuD	b3227	-	predicted transporter
3029	 55.22	0	3374301..3374798	-	165	16131118	sspB	b3228	-	ClpXP protease specificity-enhancing factor
3030	 53.68	0	3374804..3375442	-	212	16131119	sspA	b3229	-	stringent starvation protein A
3031	 52.42	0	3375837..3376229	-	130	16131120	rpsI	b3230	-	30S ribosomal subunit protein S9
3032	 50.58	0	3376245..3376673	-	142	16131121	rplM	b3231	-	50S ribosomal subunit protein L13
3033	 51.77	0	3376892..3378019	-	375	16131122	yhcM	b3232	-	conserved protein with nucleoside triphosphate hydrolase domain
3034	 54.39	0	3378213..3378611	+	132	90111560	yhcB	b3233	-	conserved protein
3035	 52.05	0	3378765..3380132	+	455	16131124	degQ	b3234	-	serine endoprotease, periplasmic
3036	 52.72	0	3380222..3381289	+	355	16131125	degS	b3235	-	serine endoprotease, periplasmic
3037	 52.29	0	3381352..3382290	-	312	16131126	mdh	b3236	-	malate dehydrogenase, NAD(P)-binding
3038	 48.62	0	3382725..3383195	+	156	16131127	argR	b3237	-	DNA-binding transcriptional dual regulator, L-arginine-binding
3039	 48.48	0	3383560..3383823	+	87	90111561	yhcN	b3238	-	conserved protein
3040	 42.86	-1	3383879..3384151	-	90	16131129	yhcO	b3239	-	predicted barnase inhibitor
3041	 52.59	0	3384243..3386210	-	655	16131130	aaeB	b3240	-	p-hydroxybenzoic acid efflux system component
3042	 53.59	0	3386216..3387148	-	310	16131131	aaeA	b3241	-	p-hydroxybenzoic acid efflux system component
3043	 47.55	0	3387156..3387359	-	67	90111562	aaeX	b3242	-	membrane protein of efflux system
3044	 52.90	0	3387542..3388471	+	309	16131133	aaeR	b3243	-	predicted DNA-binding transcriptional regulator, efflux system
3045	 54.56	0	3388605..3390050	-	481	16131134	tldD	b3244	-	predicted peptidase
3046	 53.35	0	3390480..3394280	-	1266	49176330	yhdP	b4472	-	conserved membrane protein, predicted transporter
3047	 52.11	0	3394348..3395817	-	489	90111563	rng	b3247	-	ribonuclease G
3048	 53.70	0	3395807..3396400	-	197	16131136	yhdE	b3248	-	conserved protein
3049	 51.33	0	3396409..3396897	-	162	16131137	mreD	b3249	-	cell wall structural complex MreBCD transmembrane component MreD
3050	 55.98	+1	3396897..3398000	-	367	16131138	mreC	b3250	-	cell wall structural complex MreBCD transmembrane component MreC
3051	 54.31	0	3398066..3399109	-	347	90111564	mreB	b3251	-	cell wall structural complex MreBCD, actin-like component MreB
3052	 50.70	0	3399414..3401354	-	646	16131140	csrD	b3252	-	conserved inner membrane protein
3053	 55.38	0	3401506..3402480	+	324	16131141	yhdH	b3253	-	predicted oxidoreductase, Zn-dependent and NAD(P)-binding
3054	 51.80	0	3403458..3403928	+	156	16131143	accB	b3255	-	acetyl CoA carboxylase, BCCP subunit
3055	 53.41	0	3403939..3405288	+	449	16131144	accC	b3256	-	acetyl-CoA carboxylase, biotin carboxylase subunit
3056	 54.32	0	3405397..3405639	+	80	16131145	yhdT	b3257	-	conserved inner membrane protein
3057	 54.34	0	3405629..3407080	+	483	90111565	panF	b3258	-	pantothenate:sodium symporter
3058	 54.31	0	3407092..3407973	+	293	16131147	prmA	b3259	-	methylase for 50S ribosomal subunit protein L11
3059	 52.28	0	3408302..3409267	+	321	16131148	dusB	b3260	-	tRNA-dihydrouridine synthase B
3060	 47.14	0	3409293..3409589	+	98	16131149	fis	b3261	-	global DNA-binding transcriptional dual regulator
3061	 47.46	0	3409675..3410559	+	294	90111566	yhdJ	b3262	-	predicted methyltransferase
3062	 40.56	-2	3410643..3410822	+	59	16131151	yhdU	b3263	-	predicted membrane protein
3063	 44.19	-1	3410825..3411487	-	220	16131152	envR	b3264	-	DNA-binding transcriptional regulator
3064	 52.07	0	3411886..3413043	+	385	16131153	acrE	b3265	-	cytoplasmic membrane lipoprotein
3065	 51.53	0	3413055..3416159	+	1034	16131154	acrF	b3266	-	multidrug efflux system protein
3066	 54.05	0	3416412..3416633	+	73	16131155	yhdV	b3267	-	predicted outer membrane protein
3067	 50.25	0	3418156..3419337	+	393	49176333	yhdX	b3269	-	predicted amino-acid transporter subunit
3068	 52.45	0	3419347..3420450	+	367	90111567	yhdY	b3270	-	predicted amino-acid transporter subunit
3069	 47.04	0	3420458..3421216	+	252	16131159	yhdZ	b3271	-	predicted amino-acid transporter subunit
3070	 48.83	0	3427258..3427812	+	184	90111568	yrdA	b3279	-	conserved protein
3071	 49.22	0	3427788..3428045	-	85	16131161	yrdB	b3280	-	conserved protein
3072	 48.96	0	3428042..3428860	-	272	16131162	aroE	b3281	-	dehydroshikimate reductase, NAD(P)-binding
3073	 52.18	0	3428865..3429437	-	190	16131163	rimN	b3282	-	predicted ribosome maturation factor
3074	 49.72	0	3429442..3429984	-	180	49176335	yrdD	b3283	-	predicted DNA topoisomerase
3075	 45.99	-1	3430013..3430486	-	157	16131165	smg	b3284	-	conserved protein
3076	 50.93	0	3430458..3431582	-	374	49176336	smf	b4473	-	conserved protein
3077	 46.27	-1	3431712..3432221	+	169	16131166	def	b3287	-	peptide deformylase
3078	 52.85	0	3432236..3433183	+	315	16131167	fmt	b3288	-	10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase
3079	 49.69	0	3433229..3434518	+	429	16131168	rsmB	b3289	-	16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent
3080	 50.11	0	3434540..3435916	+	458	16131169	trkA	b3290	-	NAD-binding component of TrK potassium transporter
3081	 45.01	-1	3436046..3436456	+	136	16131170	mscL	b3291	-	mechanosensitive channel
3082	 43.38	-1	3436453..3436671	-	72	94541124	yhdL	b4550	-	conserved protein
3083	 48.83	0	3436727..3437152	-	141	16131171	zntR	b3292	-	DNA-binding transcriptional activator in response to Zn(II)
3084	 47.97	0	3437163..3437531	-	122	16131172	yhdN	b3293	-	conserved protein
3085	 53.65	0	3437638..3438021	-	127	16131173	rplQ	b3294	-	50S ribosomal subunit protein L17
3086	 52.22	0	3438062..3439051	-	329	16131174	rpoA	b3295	-	RNA polymerase, alpha subunit
3087	 50.72	0	3439077..3439697	-	206	16131175	rpsD	b3296	-	30S ribosomal subunit protein S4
3088	 51.54	0	3439731..3440120	-	129	16131176	rpsK	b3297	-	30S ribosomal subunit protein S11
3089	 51.82	0	3440137..3440493	-	118	16131177	rpsM	b3298	-	30S ribosomal subunit protein S13
3090	 47.86	0	3440640..3440756	-	38	16131178	rpmJ	b3299	-	50S ribosomal subunit protein L36
3091	 49.70	0	3440788..3442119	-	443	16131179	secY	b3300	-	preprotein translocase membrane subunit
3092	 53.56	0	3442127..3442561	-	144	16131180	rplO	b3301	-	50S ribosomal subunit protein L15
3093	 50.00	0	3442565..3442744	-	59	16131181	rpmD	b3302	-	50S ribosomal subunit protein L30
3094	 50.20	0	3442748..3443251	-	167	16131182	rpsE	b3303	-	30S ribosomal subunit protein S5
3095	 53.67	0	3443266..3443619	-	117	16131183	rplR	b3304	-	50S ribosomal subunit protein L18
3096	 52.06	0	3443629..3444162	-	177	16131184	rplF	b3305	-	50S ribosomal subunit protein L6
3097	 50.13	0	3444175..3444567	-	130	16131185	rpsH	b3306	-	30S ribosomal subunit protein S8
3098	 52.61	0	3444601..3444906	-	101	16131186	rpsN	b3307	-	30S ribosomal subunit protein S14
3099	 49.81	0	3444921..3445460	-	179	16131187	rplE	b3308	-	50S ribosomal subunit protein L5
3100	 46.03	-1	3445475..3445789	-	104	16131188	rplX	b3309	-	50S ribosomal subunit protein L24
3101	 51.08	0	3445800..3446171	-	123	16131189	rplN	b3310	-	50S ribosomal subunit protein L14
3102	 47.45	0	3446336..3446590	-	84	16131190	rpsQ	b3311	-	30S ribosomal subunit protein S17
3103	 54.17	0	3446590..3446781	-	63	16131191	rpmC	b3312	-	50S ribosomal subunit protein L29
3104	 51.82	0	3446781..3447191	-	136	16131192	rplP	b3313	-	50S ribosomal subunit protein L16
3105	 51.00	0	3447204..3447905	-	233	16131193	rpsC	b3314	-	30S ribosomal subunit protein S3
3106	 49.85	0	3447923..3448255	-	110	16131194	rplV	b3315	-	50S ribosomal subunit protein L22
3107	 48.75	0	3448270..3448548	-	92	16131195	rpsS	b3316	-	30S ribosomal subunit protein S19
3108	 52.68	0	3448565..3449386	-	273	16131196	rplB	b3317	-	50S ribosomal subunit protein L2
3109	 48.18	0	3449404..3449706	-	100	16131197	rplW	b3318	-	50S ribosomal subunit protein L23
3110	 52.97	0	3449703..3450308	-	201	16131198	rplD	b3319	-	50S ribosomal subunit protein L4
3111	 51.43	0	3450319..3450948	-	209	16131199	rplC	b3320	-	50S ribosomal subunit protein L3
3112	 55.45	0	3450981..3451292	-	103