IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2503	 47.58	0	2775475..2775804	+	109	16130561	ypjF	b2646	-	CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system
2504	 49.20	0	2776168..2780748	-	1526	90111474	ypjA	b2647	-	adhesin-like autotransporter
2505	 54.29	0	2787007..2787984	+	325	90111476	csiD	b2659	-	predicted protein
2506	 57.68	+1	2788004..2789272	+	422	90111477	ygaF	b2660	-	predicted enzyme
2507	 58.32	+1	2789295..2790743	+	482	16130575	gabD	b2661	-	succinate-semialdehyde dehydrogenase I, NADP-dependent
2508	 59.33	+1	2790757..2792037	+	426	16130576	gabT	b2662	-	4-aminobutyrate aminotransferase, PLP-dependent
2509	 51.32	0	2792275..2793675	+	466	16130577	gabP	b2663	-	gamma-aminobutyrate transporter
2510	 53.54	0	2793696..2794358	+	220	90111478	csiR	b2664	-	DNA-binding transcriptional dual regulator
2511	 48.44	0	2794359..2794808	-	149	16130579	ygaU	b2665	-	predicted protein
2512	 50.94	0	2794892..2795050	-	52	16130580	yqaE	b2666	-	predicted membrane protein
2513	 53.00	0	2795233..2795532	+	99	16130581	ygaV	b2667	-	predicted DNA-binding transcriptional regulator
2514	 45.90	-1	2795542..2796066	+	174	16130582	ygaP	b2668	-	predicted inner membrane protein with hydrolase activity
2515	 48.15	0	2796113..2796517	-	134	16130583	stpA	b2669	-	DNA binding protein, nucleoid-associated
2516	 49.11	0	2797186..2797635	+	149	16130584	ygaW	b2670	-	predicted inner membrane protein
2517	 46.96	0	2797672..2798016	-	114	16130585	ygaC	b2671	-	predicted protein
2518	 53.80	0	2798156..2798497	+	113	49176257	ygaM	b2672	-	predicted protein
2519	 53.25	0	2798745..2798990	+	81	16130587	nrdH	b2673	-	glutaredoxin-like protein
2520	 55.96	+1	2798987..2799397	+	136	16130588	nrdI	b2674	-	protein that stimulates ribonucleotide reduction
2521	 51.84	0	2799370..2801514	+	714	16130589	nrdE	b2675	-	ribonucleoside-diphosphate reductase 2, alpha subunit
2522	 48.23	0	2801524..2802483	+	319	16130590	nrdF	b2676	-	ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein
2523	 49.04	0	2802837..2804039	+	400	16130591	proV	b2677	-	glycine betaine transporter subunit
2524	 58.12	+1	2804032..2805096	+	354	16130592	proW	b2678	-	glycine betaine transporter subunit
2525	 52.57	0	2805154..2806146	+	330	16130593	proX	b2679	-	glycine betaine transporter subunit
2526	 52.85	0	2807639..2808376	+	245	16130594	ygaZ	b2682	-	predicted transporter
2527	 54.46	0	2808366..2808701	+	111	16130595	ygaH	b2683	-	predicted inner membrane protein
2528	 49.15	0	2808792..2809322	+	176	16130596	mprA	b2684	-	DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux
2529	 53.37	0	2809449..2810621	+	390	16130597	emrA	b2685	-	multidrug efflux system
2530	 56.60	+1	2810638..2812176	+	512	16130598	emrB	b2686	-	multidrug efflux system protein
2531	 51.55	0	2812240..2812755	-	171	16130599	luxS	b2687	-	S-ribosylhomocysteinase
2532	 51.32	0	2812905..2814461	-	518	16130600	gshA	b2688	-	gamma-glutamate-cysteine ligase
2533	 49.42	0	2814534..2814962	-	142	16130601	yqaA	b2689	-	conserved inner membrane protein
2534	 53.44	0	2814959..2815525	-	188	16130602	yqaB	b2690	-	predicted hydrolase
2535	 49.46	0	2816983..2817168	-	61	16130603	csrA	b2696	-	pleiotropic regulatory protein for carbon source metabolism
2536	 53.63	0	2817403..2820033	-	876	16130604	alaS	b2697	-	alanyl-tRNA synthetase
2537	 51.90	0	2820161..2820661	-	166	16130605	recX	b2698	-	regulatory protein for RecA
2538	 54.14	0	2820730..2821791	-	353	16130606	recA	b2699	-	DNA strand exchange and recombination protein with protease and nuclease activity
2539	 56.63	+1	2821871..2822368	-	165	16130607	ygaD	b2700	-	conserved protein
2540	 55.16	0	2822513..2823598	-	361	16130608	mltB	b2701	-	membrane-bound lytic murein transglycosylase B
2541	 50.18	0	2823854..2824417	+	187	49176260	srlA	b2702	-	glucitol/sorbitol-specific enzyme IIC component of PTS
2542	 54.69	0	2824414..2825373	+	319	49176261	srlE	b2703	-	glucitol/sorbitol-specific enzyme IIB component of PTS
2543	 55.11	0	2825384..2825755	+	123	16130611	srlB	b2704	-	glucitol/sorbitol-specific enzyme IIA component of PTS
2544	 53.33	0	2825759..2826538	+	259	16130612	srlD	b2705	-	sorbitol-6-phosphate dehydrogenase
2545	 55.00	0	2826643..2827002	+	119	16130613	gutM	b2706	-	DNA-binding transcriptional activator of glucitol operon
2546	 48.84	0	2827069..2827842	+	257	16130614	srlR	b2707	-	DNA-bindng transcriptional repressor
2547	 57.35	+1	2827835..2828800	+	321	90111480	gutQ	b2708	-	predicted phosphosugar-binding protein
2548	 56.83	+1	2828797..2830311	-	504	90111481	norR	b2709	-	DNA-binding transcriptional activator
2549	 53.33	0	2830498..2831937	+	479	16130617	norV	b2710	-	flavorubredoxin oxidoreductase
2550	 54.06	0	2831934..2833067	+	377	16130618	norW	b2711	-	NADH:flavorubredoxin oxidoreductase
2551	 57.61	+1	2833195..2835447	-	750	16130619	hypF	b2712	-	carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases
2552	 52.27	0	2835600..2836127	-	175	16130620	hydN	b2713	-	formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit
2553	 53.16	0	2836276..2837289	-	337	16130621	ascG	b2714	-	DNA-binding transcriptional repressor
2554	 56.10	+1	2837546..2839003	+	485	49176263	ascF	b2715	-	fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component
2555	 51.51	0	2839012..2840436	+	474	16130623	ascB	b2716	-	cryptic 6-phospho-beta-glucosidase
2556	 53.93	0	2840595..2841065	-	156	16130624	hycI	b2717	-	protease involved in processing C-terminal end of HycE
2557	 52.80	0	2841058..2841468	-	136	16130625	hycH	b2718	-	protein required for maturation of hydrogenase 3
2558	 56.38	+1	2841465..2842232	-	255	16130626	hycG	b2719	-	hydrogenase 3 and formate hydrogenase complex, HycG subunit
2559	 55.62	0	2842232..2842774	-	180	16130627	hycF	b2720	-	formate hydrogenlyase complex iron-sulfur protein
2560	 56.90	+1	2842784..2844493	-	569	16130628	hycE	b2721	-	hydrogenase 3, large subunit
2561	 58.44	+1	2844511..2845434	-	307	16130629	hycD	b2722	-	hydrogenase 3, membrane subunit
2562	 58.18	+1	2845437..2847263	-	608	16130630	hycC	b2723	-	hydrogenase 3, membrane subunit
2563	 57.35	+1	2847260..2847871	-	203	16130631	hycB	b2724	-	hydrogenase 3, Fe-S subunit
2564	 50.22	0	2847996..2848457	-	153	16130632	hycA	b2725	-	regulator of the transcriptional regulator FhlA
2565	 52.99	0	2848669..2849019	+	116	16130633	hypA	b2726	-	protein involved in nickel insertion into hydrogenases 3
2566	 55.21	0	2849023..2849895	+	290	16130634	hypB	b2727	-	GTP hydrolase involved in nickel liganding into hydrogenases
2567	 55.31	0	2849886..2850158	+	90	16130635	hypC	b2728	-	protein required for maturation of hydrogenases 1 and 3
2568	 55.44	0	2850158..2851279	+	373	16130636	hypD	b2729	-	protein required for maturation of hydrogenases
2569	 57.07	+1	2851318..2852286	+	322	16130637	hypE	b2730	-	carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein
2570	 52.57	0	2852360..2854438	+	692	16130638	fhlA	b2731	-	DNA-binding transcriptional activator
2571	 50.56	0	2854475..2854828	-	117	16130639	ygbA	b2732	-	predicted protein
2572	 56.13	+1	2855115..2857676	+	853	16130640	mutS	b2733	-	methyl-directed mismatch repair protein
2573	 42.31	-1	2857782..2858438	+	218	16130641	pphB	b2734	-	serine/threonine-specific protein phosphatase 2
2574	 51.38	0	2858489..2859286	-	265	16130642	ygbI	b2735	-	predicted DNA-binding transcriptional regulator
2575	 53.03	0	2859452..2860360	+	302	16130643	ygbJ	b2736	-	predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain
2576	 55.10	0	2860357..2861523	+	388	16130644	ygbK	b2737	-	conserved protein
2577	 53.52	0	2861615..2862253	+	212	16130645	ygbL	b2738	-	predicted class II aldolase
2578	 51.48	0	2862258..2863034	+	258	16130646	ygbM	b2739	-	conserved protein
2579	 51.72	0	2863123..2864487	+	454	16130647	ygbN	b2740	-	predicted transporter
2580	 52.06	0	2864581..2865573	-	330	16130648	rpoS	b2741	-	RNA polymerase, sigma S (sigma 38) factor
2581	 52.46	0	2865636..2866775	-	379	16130649	nlpD	b2742	-	predicted outer membrane lipoprotein
2582	 53.43	0	2866915..2867541	-	208	16130650	pcm	b2743	-	L-isoaspartate protein carboxylmethyltransferase type II
2583	 54.72	0	2867535..2868296	-	253	16130651	surE	b2744	-	broad specificity 5'(3')-nucleotidase and polyphosphatase
2584	 52.19	0	2868277..2869326	-	349	16130652	truD	b2745	-	pseudoruidine synthase
2585	 53.75	0	2869323..2869802	-	159	16130653	ispF	b2746	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2586	 55.41	0	2869802..2870512	-	236	16130654	ispD	b2747	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
2587	 51.92	0	2870531..2870842	-	103	16130655	ftsB	b2748	-	cell division protein
2588	 48.15	0	2871036..2871359	-	107	16130656	ygbE	b2749	-	conserved inner membrane protein
2589	 52.48	0	2871409..2872014	-	201	16130657	cysC	b2750	-	adenosine 5'-phosphosulfate kinase
2590	 54.62	0	2872014..2873441	-	475	16130658	cysN	b2751	-	sulfate adenylyltransferase, subunit 1
2591	 53.03	0	2873443..2874351	-	302	16130659	cysD	b2752	-	su