IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2456	 54.78	0	2732325..2733056	-	243	16130514	yfiH	b2593	-	conserved protein
2457	 52.80	0	2733053..2734033	-	326	16130515	rluD	b2594	-	23S rRNA pseudouridine synthase
2458	 51.22	0	2734168..2734905	+	245	16130516	bamD	b2595	-	predicted lipoprotein
2459	 46.20	-1	2735176..2735517	+	113	16130518	raiA	b2597	-	cold shock protein associated with 30S ribosomal subunit
2460	 37.50	-2	2735621..2735668	+	15	16130519	pheL	b2598	-	pheA gene leader peptide
2461	 49.18	0	2735767..2736927	+	386	16130520	pheA	b2599	-	fused chorismate mutase P/prephenate dehydratase
2462	 52.32	0	2736970..2738091	-	373	16130521	tyrA	b2600	-	fused chorismate mutase T/prephenate dehydrogenase
2463	 51.82	0	2738102..2739172	-	356	16130522	aroF	b2601	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible
2464	 45.63	-1	2739382..2739747	+	121	90111465	yfiL	b2602	-	predicted protein
2465	 45.66	-1	2739897..2740415	+	172	16130524	yfiR	b2603	-	predicted protein
2466	 48.33	0	2740405..2741631	+	408	16130525	yfiN	b2604	-	predicted diguanylate cyclase
2467	 51.14	0	2741647..2742129	+	160	16130526	yfiB	b2605	-	predicted outer membrane lipoprotein
2468	 48.28	0	2742205..2742552	-	115	16130527	rplS	b2606	-	50S ribosomal subunit protein L19
2469	 53.39	0	2742594..2743361	-	255	16130528	trmD	b2607	-	tRNA (guanine-1-)-methyltransferase
2470	 49.00	0	2743392..2743940	-	182	90111466	rimM	b2608	-	16S rRNA processing protein
2471	 51.41	0	2743959..2744207	-	82	16130530	rpsP	b2609	-	30S ribosomal subunit protein S16
2472	 54.19	0	2744456..2745817	-	453	16130531	ffh	b2610	-	Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
2473	 52.65	0	2745984..2746775	+	263	145698303	ypjD	b2611	-	predicted inner membrane protein
2474	 51.13	0	2746796..2748082	+	428	145698304	yfjD	b4461	-	predicted inner membrane protein
2475	 50.34	0	2748137..2748730	-	197	16130533	grpE	b2614	-	heat shock protein
2476	 49.94	0	2748853..2749731	+	292	16130534	nadK	b2615	-	NAD kinase
2477	 51.81	0	2749817..2751478	+	553	49176247	recN	b2616	-	recombination and repair protein
2478	 49.42	0	2751627..2751968	+	113	90111468	smpA	b2617	-	small membrane lipoprotein
2479	 50.86	0	2752030..2752320	-	96	90111469	yfjF	b2618	-	predicted protein
2480	 47.17	0	2752310..2752786	-	158	16130538	yfjG	b2619	-	conserved protein
2481	 51.76	0	2752918..2753400	+	160	16130539	smpB	b2620	-	trans-translation protein
2482	 47.58	0	2754181..2755422	+	413	16130540	intA	b2622	-	CP4-57 prophage; integrase
2483	 36.78	-2	2755666..2756622	-	318	16130541	yfjH	b2623	-	CP4-57 prophage; predicted protein
2484	 46.95	0	2756666..2756878	+	70	16130542	alpA	b2624	-	CP4-57 prophage; DNA-binding transcriptional activator
2485	 37.94	-2	2757007..2758416	+	469	16130543	yfjI	b2625	-	CP4-57 prophage; predicted protein
2486	 40.35	-2	2758569..2759195	+	208	16130544	yfjJ	b2626	-	CP4-57 prophage; predicted protein
2487	 48.90	0	2759373..2761562	-	729	16130545	yfjK	b2627	-	CP4-57 prophage; conserved protein
2488	 48.67	0	2761559..2763175	-	538	16130546	yfjL	b2628	-	CP4-57 prophage; predicted protein
2489	 45.45	-1	2763535..2763798	-	87	16130547	yfjM	b2629	-	CP4-57 prophage; predicted protein
2490	 44.32	-1	2763940..2765013	+	357	16130548	rnlA	b2630	-	CP4-57 prophage; RNase LS
2491	 45.97	-1	2765006..2765377	+	123	90111470	yfjO	b2631	-	CP4-57 prophage; predicted protein
2492	 54.05	0	2765732..2766595	+	287	49176249	yfjP	b2632	-	CP4-57 prophage; predicted GTP-binding protein
2493	 55.60	0	2766687..2767508	+	273	16130551	yfjQ	b2633	-	CP4-57 prophage; predicted protein
2494	 57.26	+1	2767725..2768426	+	233	16130552	yfjR	b2634	-	CP4-57 prophage; predicted DNA-binding transcriptional regulator
2495	 53.16	0	2768467..2768703	+	78	90111471	ypjK	b2635	-	CP4-57 prophage; predicted inner membrane protein
2496	 50.90	0	2768703..2769146	+	147	90111472	yfjS	b2636	-	CP4-57 prophage; predicted protein
2497	 51.28	0	2769170..2769637	+	155	16130554	yfjT	b2637	-	CP4-57 prophage; predicted protein
2498	 31.22	-2	2771340..2773043	+	567	16130557	yfjW	b2642	-	CP4-57 prophage; predicted inner membrane protein
2499	 54.03	0	2773941..2774399	+	152	16130558	yfjX	b2643	-	CP4-57 prophage; predicted antirestriction protein
2500	 54.24	0	2774408..2774890	+	160	16130559	yfjY	b2644	-	CP4-57 prophage; predicted DNA repair protein
2501	 54.73	0	2774899..2775099	+	66	94541123	ypjJ	b4548	-	predicted protein
2502	 54.40	0	2775137..2775454	+	105	16130560	yfjZ	b2645	-	CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system
2503	 47.58	0	2775475..2775804	+	109	16130561	ypjF	b2646	-	CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system
2504	 49.20	0	2776168..2780748	-	1526	90111474	ypjA	b2647	-	adhesin-like autotransporter
2505	 54.29	0	2787007..2787984	+	325	90111476	csiD	b2659	-	predicted protein
2506	 57.68	+1	2788004..2789272	+	422	90111477	ygaF	b2660	-	predicted enzyme
2507	 58.32	+1	2789295..2790743	+	482	16130575	gabD	b2661	-	succinate-semialdehyde dehydrogenase I, NADP-dependent
2508	 59.33	+1	2790757..2792037	+	426	16130576	gabT	b2662	-	4-aminobutyrate aminotransferase, PLP-dependent
2509	 51.32	0	2792275..2793675	+	466	16130577	gabP	b2663	-	gamma-aminobutyrate transporter
2510	 53.54	0	2793696..2794358	+	220	90111478	csiR	b2664	-	DNA-binding transcriptional dual regulator
2511	 48.44	0	2794359..2794808	-	149	16130579	ygaU	b2665	-	predicted protein
2512	 50.94	0	2794892..2795050	-	52	16130580	yqaE	b2666	-	predicted membrane protein
2513	 53.00	0	2795233..2795532	+	99	16130581	ygaV	b2667	-	predicted DNA-binding transcriptional regulator
2514	 45.90	-1	2795542..2796066	+	174	16130582	ygaP	b2668	-	predicted inner membrane protein with hydrolase activity
2515	 48.15	0	2796113..2796517	-	134	16130583	stpA	b2669	-	DNA binding protein, nucleoid-associated
2516	 49.11	0	2797186..2797635	+	149	16130584	ygaW	b2670	-	predicted inner membrane protein
2517	 46.96	0	2797672..2798016	-	114	16130585	ygaC	b2671	-	predicted protein
2518	 53.80	0	2798156..2798497	+	113	49176257	ygaM	b2672	-	predicted protein
2519	 53.25	0	2798745..2798990	+	81	16130587	nrdH	b2673	-	glutaredoxin-like protein
2520	 55.96	+1	2798987..2799397	+	136	16130588	nrdI	b2674	-	protein that stimulates ribonucleotide reduction
2521	 51.84	0	2799370..2801514	+	714	16130589	nrdE	b2675	-	ribonucleoside-diphosphate reductase 2, alpha subunit
2522	 48.23	0	2801524..2802483	+	319	16130590	nrdF	b2676	-	ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein
2523	 49.04	0	2802837..2804039	+	400	16130591	proV	b2677	-	glycine betaine transporter subunit
2524	 58.12	+1	2804032..2805096	+	354	16130592	proW	b2678	-	glycine betaine transporter subunit
2525	 52.57	0	2805154..2806146	+	330	16130593	proX	b2679	-	glycine betaine transporter subunit
2526	 52.85	0	2807639..2808376	+	245	16130594	ygaZ	b2682	-	predicted transporter
2527	 54.46	0	2808366..2808701	+	111	16130595	ygaH	b2683	-	predicted inner membrane protein
2528	 49.15	0	2808792..2809322	+	176	16130596	mprA	b2684	-	DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux
2529	 53.37	0	2809449..2810621	+	390	16130597	emrA	b2685	-	multidrug efflux system
2530	 56.60	+1	2810638..2812176	+	512	16130598	emrB	b2686	-	multidrug efflux system protein
2531	 51.55	0	2812240..2812755	-	171	16130599	luxS	b2687	-	S-ribosylhomocysteinase
2532	 51.32	0	2812905..2814461	-	518	16130600	gshA	b2688	-	gamma-glutamate-cysteine ligase
2533	 49.42	0	2814534..2814962	-	142	16130601	yqaA	b2689	-	conserved inner membrane protein
2534	 53.44	0	2814959..2815525	-	188	16130602	yqaB	b2690	-	predicted hydrolase
2535	 49.46	0	2816983..2817168	-	61	16130603	csrA	b2696	-	pleiotropic regulatory protein for carbon source metabolism
2536	 53.63	0	2817403..2820033	-	876	16130604	alaS	b2697	-	alanyl-tRNA synthetase
2537	 51.90	0	2820161..2820661	-	166	16130605	recX	b2698	-	regulatory protein for RecA
2538	 54.14	0	2820730..2821791	-	353	16130606	recA	b2699	-	DNA strand exchange and recombination protein with protease and nuclease activity
2539	 56.63	+1	2821871..2822368	-	165	16130607	ygaD	b2700	-	conserved protein
2540	 55.16	0	2822513..2823598	-	361	16130608	mltB	b2701	-	membrane-bound lytic murein transglycosylase B
2541	 50.18	0	2823854..2824417	+	187	49176260	srlA	b2702	-	glucitol/sorbitol-specific enzyme IIC component of PTS
2542	 54.69	0	2824414..2825373	+	319	49176261	srlE	b2703	-	glucitol/sorbitol-specific enzyme IIB component of PTS
2543	 55.11	0	2825384..2825755	+	123	16130611	srlB	b2704	-	glucitol/sorbitol-specific enzyme IIA component of PTS
2544	 53.33	0	2825759..2826538	+	259	16130612	srlD	b2705	-	sorbitol-6-phosphate dehydrogenase
2545	 55.00	0	2826643..2827002	+	119	16130613	gutM	b2706	-	DNA-binding transcriptional activator of glucit